Wall clock time and date at job start Tue Mar 31 2020 15:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47262 * 2 1 4 4 C 1.46500 * 120.00214 * 275.00199 * 3 2 1 5 5 C 1.50705 * 109.47046 * 275.00048 * 4 3 2 6 6 H 1.07997 * 119.99629 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99952 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00112 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00097 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46930 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47388 * 120.00003 * 9 7 5 12 12 H 1.48503 * 109.47135 * 240.00055 * 9 7 5 13 13 S 1.65602 * 119.99815 * 95.00020 * 3 2 1 14 14 O 1.42103 * 104.27578 * 333.92970 * 13 3 2 15 15 O 1.42096 * 104.27525 * 206.07127 * 13 3 2 16 16 C 1.81400 * 104.44972 * 90.00016 * 13 3 2 17 17 H 1.09002 * 115.55860 * 39.29534 * 16 13 3 18 18 C 1.53000 * 117.50197 * 253.60971 * 16 13 3 19 19 C 1.52997 * 117.50001 * 184.98202 * 16 13 3 20 20 H 1.08999 * 117.49685 * 0.02562 * 19 16 13 21 21 C 1.50696 * 117.52180 * 214.96873 * 19 16 13 22 22 C 1.38262 * 119.98926 * 299.71203 * 21 19 16 23 23 C 1.38224 * 120.04986 * 179.72160 * 22 21 19 24 24 C 1.38227 * 120.02619 * 0.54735 * 23 22 21 25 25 C 1.38435 * 119.97374 * 359.72468 * 24 23 22 26 26 F 1.35092 * 120.02626 * 180.02562 * 25 24 23 27 27 C 1.38175 * 119.98574 * 119.97860 * 21 19 16 28 28 H 1.08998 * 109.47296 * 300.00093 * 1 2 3 29 29 H 1.08999 * 109.47100 * 59.99899 * 1 2 3 30 30 H 1.09000 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46990 * 240.00268 * 2 1 3 32 32 H 1.08999 * 109.47602 * 120.00267 * 2 1 3 33 33 H 1.09005 * 109.46883 * 34.99602 * 4 3 2 34 34 H 1.09000 * 109.47191 * 154.99800 * 4 3 2 35 35 H 0.97000 * 119.99819 * 179.97438 * 8 7 5 36 36 H 1.08990 * 117.49990 * 145.01827 * 18 16 13 37 37 H 1.09004 * 117.49237 * 359.97438 * 18 16 13 38 38 H 1.07998 * 119.97380 * 359.97438 * 22 21 19 39 39 H 1.08002 * 119.98716 * 180.27206 * 23 22 21 40 40 H 1.08006 * 120.01172 * 179.70189 * 24 23 22 41 41 H 1.08011 * 120.01429 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8525 2.3606 -3.0848 8 7 3.0271 3.1849 -3.6924 9 14 5.5088 1.9636 -3.8518 10 1 6.2453 1.0166 -2.9766 11 1 5.3012 1.3459 -5.1861 12 1 6.2971 3.2131 -4.0021 13 16 2.4122 2.1202 1.4287 14 8 1.6208 1.4495 2.3999 15 8 2.2334 3.5055 1.1677 16 6 4.1697 1.7388 1.6661 17 1 4.7826 1.7656 0.7652 18 6 4.5303 0.7055 2.7353 19 6 4.8195 2.1886 2.9762 20 1 4.1908 2.7132 3.6956 21 6 6.2580 2.6345 2.9229 22 6 7.2380 1.7575 2.4961 23 6 8.5570 2.1670 2.4412 24 6 8.8993 3.4504 2.8237 25 6 7.9197 4.3276 3.2566 26 9 8.2530 5.5823 3.6302 27 6 6.5978 3.9179 3.3058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3617 1.8098 -1.9453 34 1 2.0922 3.1803 -1.0755 35 1 3.2790 3.5874 -4.5383 36 1 5.3803 0.0526 2.5378 37 1 3.7114 0.2552 3.2964 38 1 6.9721 0.7531 2.2015 39 1 9.3211 1.4825 2.1034 40 1 9.9308 3.7686 2.7853 41 1 5.8326 4.6016 3.6428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914061563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:26 Heat of formation + Delta-G solvation = -86.479184 kcal Electronic energy + Delta-G solvation = -25966.521322 eV Core-core repulsion = 22081.087473 eV Total energy + Delta-G solvation = -3885.433849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95329 -40.63001 -38.27563 -37.74685 -37.66223 -36.93171 -34.68871 -32.12279 -31.50787 -31.19980 -28.49071 -25.39991 -24.90521 -24.41840 -23.64193 -23.11850 -21.68474 -19.71706 -18.88779 -18.49077 -18.20037 -17.96537 -17.26374 -17.17716 -17.06553 -16.64464 -16.39812 -15.85956 -15.51432 -14.92290 -14.76384 -14.62980 -14.52574 -14.02397 -13.78947 -13.64098 -13.59778 -13.33616 -13.33364 -13.06839 -13.00157 -12.93158 -12.74648 -12.64838 -12.28440 -12.17504 -12.13898 -12.01519 -11.92692 -11.77368 -11.57102 -11.40016 -10.59912 -9.96731 -9.76194 -9.57621 -8.17722 -6.32616 -0.60497 0.06319 0.17325 1.41230 1.42446 1.53447 1.73585 2.19930 2.41041 2.65507 2.89357 3.10618 3.14609 3.35468 3.44892 3.55711 3.72265 3.83775 4.00584 4.03566 4.07663 4.14517 4.40343 4.46793 4.53353 4.61593 4.75718 4.78816 4.83594 4.93474 5.02402 5.05819 5.09989 5.17634 5.29473 5.31412 5.44353 5.44925 5.54838 5.76750 5.87475 5.98021 6.09252 6.80887 7.38193 8.90690 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.005007 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.564941 B = 5591.181650 C = 7312.091759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.989 5.989 4 C 0.258 3.742 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.251 1.251 11 H -0.279 1.279 12 H -0.287 1.287 13 S 2.637 3.363 14 O -0.974 6.974 15 O -1.004 7.004 16 C -0.669 4.669 17 H 0.162 0.838 18 C -0.089 4.089 19 C -0.077 4.077 20 H 0.130 0.870 21 C -0.037 4.037 22 C -0.127 4.127 23 C -0.084 4.084 24 C -0.156 4.156 25 C 0.078 3.922 26 F -0.149 7.149 27 C -0.163 4.163 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -8.541 14.177 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.826 5.826 4 C 0.135 3.865 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.175 1.175 11 H -0.205 1.205 12 H -0.213 1.213 13 S 2.733 3.267 14 O -0.964 6.964 15 O -0.995 6.995 16 C -0.780 4.780 17 H 0.180 0.820 18 C -0.126 4.126 19 C -0.097 4.097 20 H 0.148 0.852 21 C -0.038 4.038 22 C -0.145 4.145 23 C -0.102 4.102 24 C -0.174 4.174 25 C 0.059 3.941 26 F -0.128 7.128 27 C -0.182 4.182 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.094 -7.894 14.553 18.890 hybrid contribution 0.912 0.782 -1.251 1.734 sum 10.006 -7.112 13.303 18.101 Atomic orbital electron populations 1.22201 0.96310 1.03138 1.01135 1.21300 0.94435 0.81112 1.03635 1.57229 1.79170 1.24180 1.22046 1.18716 0.96495 0.90936 0.80401 1.21957 1.02690 1.27609 1.06087 0.90374 1.25880 1.00931 0.94694 0.97698 1.70090 1.38097 1.31267 1.17593 0.85494 0.79399 0.78132 0.78647 1.17467 1.20502 1.21312 1.03716 0.77167 0.73027 0.72810 1.93504 1.66122 1.75860 1.60961 1.93505 1.86256 1.35052 1.84670 1.32703 1.23701 1.18637 1.02944 0.82035 1.23319 1.05311 0.90162 0.93857 1.20971 0.94038 1.00648 0.94063 0.85170 1.18917 0.93355 0.93156 0.98346 1.21503 0.92667 1.01077 0.99237 1.21401 0.96847 0.95268 0.96695 1.21500 1.00116 0.94384 1.01441 1.17889 0.94051 0.80280 1.01844 1.91471 1.93183 1.38765 1.89361 1.21150 0.95478 0.97453 1.04079 0.93367 0.93984 0.88958 0.90148 0.88629 0.96261 0.96724 0.92621 0.83777 0.84636 0.82772 0.81505 0.82612 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 3.89 5.98 86.38 0.52 4.41 16 3 N -0.99 -40.14 2.70 -519.82 -1.40 -41.54 16 4 C 0.26 13.21 5.41 85.63 0.46 13.67 16 5 C -0.54 -28.18 9.38 25.60 0.24 -27.94 16 6 H 0.08 3.70 7.54 -2.91 -0.02 3.67 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 9 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 10 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 13 S 2.64 100.33 5.74 -56.49 -0.32 100.01 16 14 O -0.97 -35.67 16.05 -127.65 -2.05 -37.72 16 15 O -1.00 -48.40 16.53 -127.65 -2.11 -50.51 16 16 C -0.67 -19.59 6.23 30.59 0.19 -19.40 16 17 H 0.16 5.17 7.87 -2.39 -0.02 5.15 16 18 C -0.09 -1.73 9.49 30.60 0.29 -1.44 16 19 C -0.08 -1.87 5.80 -11.54 -0.07 -1.93 16 20 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 21 C -0.04 -0.89 5.61 -19.87 -0.11 -1.00 16 22 C -0.13 -2.46 9.30 22.27 0.21 -2.25 16 23 C -0.08 -1.43 10.04 22.26 0.22 -1.20 16 24 C -0.16 -3.02 10.03 22.31 0.22 -2.80 16 25 C 0.08 1.92 7.30 22.38 0.16 2.09 16 26 F -0.15 -3.91 17.27 44.97 0.78 -3.14 16 27 C -0.16 -4.14 9.72 22.31 0.22 -3.93 16 28 H 0.05 1.54 7.90 -2.39 -0.02 1.53 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 32 H 0.10 2.47 7.61 -2.39 -0.02 2.45 16 33 H 0.02 1.05 8.11 -2.38 -0.02 1.03 16 34 H 0.01 0.86 6.82 -2.39 -0.02 0.84 16 35 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.14 1.92 6.17 -2.39 -0.01 1.90 16 37 H 0.14 2.28 7.68 -2.38 -0.02 2.27 16 38 H 0.15 2.24 6.01 -2.91 -0.02 2.22 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.18 363.14 2.00 -70.18 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.04 Total: 18.75 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 3.76 Total: -45.29 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -1.12 Total: -95.93 kcal Atomic # 8 Polarization: -84.07 SS G_CDS: -4.16 Total: -88.23 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 100.33 SS G_CDS: -0.32 Total: 100.01 kcal Total: -72.18 2.00 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914061563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.299 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds