Wall clock time and date at job start Tue Mar 31 2020 15:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47223 * 2 1 4 4 C 1.50703 * 109.47149 * 239.99540 * 2 1 3 5 5 H 1.07997 * 119.99965 * 239.99773 * 4 2 1 6 6 C 1.37872 * 119.99889 * 60.00339 * 4 2 1 7 7 N 1.31520 * 120.00006 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46681 * 90.00362 * 8 6 4 10 10 H 1.48499 * 109.46967 * 209.99628 * 8 6 4 11 11 H 1.48499 * 109.47269 * 330.00012 * 8 6 4 12 12 N 1.46506 * 109.46930 * 119.99790 * 2 1 3 13 13 C 1.46500 * 119.99901 * 59.99993 * 12 2 1 14 14 S 1.65598 * 119.99666 * 240.00102 * 12 2 1 15 15 O 1.42098 * 104.27587 * 153.92806 * 14 12 2 16 16 O 1.42096 * 104.27974 * 26.07048 * 14 12 2 17 17 C 1.81403 * 104.45042 * 269.99759 * 14 12 2 18 18 H 1.08997 * 115.54808 * 39.33214 * 17 14 12 19 19 C 1.53074 * 117.49498 * 253.60488 * 17 14 12 20 20 C 1.52995 * 59.98413 * 252.51398 * 19 17 14 21 21 H 1.09005 * 117.50247 * 107.50272 * 20 19 17 22 22 C 1.50702 * 117.50083 * 252.49909 * 20 19 17 23 23 C 1.38270 * 119.98561 * 9.02843 * 22 20 19 24 24 C 1.38224 * 120.05223 * 180.32259 * 23 22 20 25 25 C 1.38220 * 120.02601 * 359.67397 * 24 23 22 26 26 C 1.38447 * 119.97159 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.02523 * 179.97438 * 26 25 24 28 28 C 1.38172 * 119.98969 * 188.74246 * 22 20 19 29 29 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47361 * 300.00646 * 1 2 3 31 31 H 1.09008 * 109.46505 * 60.00431 * 1 2 3 32 32 H 0.96996 * 119.99690 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46849 * 270.00101 * 13 12 2 34 34 H 1.08996 * 109.47134 * 30.00225 * 13 12 2 35 35 H 1.08998 * 109.46930 * 150.00017 * 13 12 2 36 36 H 1.09001 * 117.51292 * 145.03507 * 19 17 14 37 37 H 1.09000 * 117.49156 * 0.02562 * 19 17 14 38 38 H 1.08005 * 119.97405 * 0.02562 * 23 22 20 39 39 H 1.07994 * 119.98833 * 179.69678 * 24 23 22 40 40 H 1.07998 * 120.01498 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.01574 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 2.7431 -0.5610 3.5157 16 8 2.6121 1.4797 2.1233 17 6 4.6649 -0.1729 1.7060 18 1 4.8025 -0.1460 0.6251 19 6 5.5293 -1.1512 2.5053 20 6 5.8082 0.3514 2.5771 21 1 5.5423 0.8693 3.4986 22 6 7.0388 0.8650 1.8749 23 6 7.7624 0.0269 1.0467 24 6 8.8950 0.4947 0.4072 25 6 9.3018 1.8030 0.5898 26 6 8.5746 2.6448 1.4139 27 9 8.9715 3.9236 1.5935 28 6 7.4402 2.1749 2.0543 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 0.7089 1.1611 -3.4844 33 1 0.7375 -2.1443 1.9994 34 1 1.5295 -2.5968 0.4710 35 1 2.4628 -2.5818 1.9865 36 1 6.2358 -1.7683 1.9501 37 1 5.0792 -1.6222 3.3792 38 1 7.4450 -0.9954 0.9031 39 1 9.4621 -0.1622 -0.2355 40 1 10.1865 2.1684 0.0897 41 1 6.8721 2.8309 2.6973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914063758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:08 Heat of formation + Delta-G solvation = -60.921429 kcal Electronic energy + Delta-G solvation = -25940.980947 eV Core-core repulsion = 22056.655365 eV Total energy + Delta-G solvation = -3884.325582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.01677 -39.74895 -37.00540 -36.50540 -36.17877 -35.39134 -32.62905 -31.27972 -30.34268 -29.09219 -25.57016 -25.20431 -24.38439 -23.40748 -22.67025 -20.92559 -20.59551 -18.24972 -17.75883 -17.06846 -16.70138 -16.42833 -16.31109 -16.06672 -15.70631 -15.48206 -14.90404 -14.58573 -14.03815 -13.66204 -13.52284 -13.21728 -12.99836 -12.77596 -12.70611 -12.34280 -12.07592 -12.00163 -11.82679 -11.61790 -11.40902 -11.26359 -11.22871 -11.10670 -10.98562 -10.93422 -10.87515 -10.44540 -10.40967 -10.21326 -10.05678 -9.28849 -9.07324 -8.78278 -8.51524 -7.93240 -6.12683 -4.22084 0.77187 0.95162 1.02363 2.97769 3.21303 3.28626 3.29679 3.39778 3.60465 3.96727 4.23203 4.32549 4.39180 4.47046 4.59402 4.61561 4.83418 4.91554 4.96351 5.12144 5.17777 5.21994 5.48289 5.58536 5.61246 5.74713 5.86126 5.91718 5.93101 6.11381 6.18486 6.30288 6.32538 6.65632 6.69582 6.86512 6.89955 7.12151 7.44986 7.59465 7.76254 8.02551 8.22953 8.81300 9.44696 10.92232 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.004438 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.641305 B = 6308.219402 C = 7650.457624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.978 5.978 13 C 0.107 3.893 14 S 2.632 3.368 15 O -0.971 6.971 16 O -0.952 6.952 17 C -0.664 4.664 18 H 0.168 0.832 19 C -0.117 4.117 20 C -0.076 4.076 21 H 0.124 0.876 22 C -0.020 4.020 23 C -0.124 4.124 24 C -0.087 4.087 25 C -0.157 4.157 26 C 0.101 3.899 27 F -0.140 7.140 28 C -0.144 4.144 29 H 0.032 0.968 30 H 0.013 0.987 31 H 0.092 0.908 32 H 0.264 0.736 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.552 -3.313 7.764 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.818 5.818 13 C -0.039 4.039 14 S 2.723 3.277 15 O -0.962 6.962 16 O -0.942 6.942 17 C -0.769 4.769 18 H 0.186 0.814 19 C -0.155 4.155 20 C -0.096 4.096 21 H 0.141 0.859 22 C -0.021 4.021 23 C -0.142 4.142 24 C -0.105 4.105 25 C -0.176 4.176 26 C 0.081 3.919 27 F -0.118 7.118 28 C -0.163 4.163 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.192 -2.652 8.359 15.841 hybrid contribution 0.781 -0.426 -1.656 1.880 sum 13.973 -3.078 6.703 15.800 Atomic orbital electron populations 1.22036 0.97773 0.99664 1.00820 1.18778 0.92079 0.92874 0.80014 0.92164 1.21405 1.32191 1.13201 0.90249 0.91852 1.24928 0.94925 0.94928 0.98990 1.69883 1.36033 1.22476 1.23866 0.86550 0.79160 0.79380 0.82591 1.20571 1.21154 1.19976 1.57371 1.62860 1.21540 1.40047 1.21198 0.99131 0.81815 1.01794 1.04156 0.75389 0.74324 0.73824 1.93521 1.83913 1.75923 1.42812 1.93578 1.80486 1.33856 1.86293 1.33248 1.19132 1.13996 1.10525 0.81402 1.22966 1.00273 0.91091 1.01126 1.20758 0.92368 0.98068 0.98391 0.85852 1.18839 0.94307 0.92728 0.96208 1.21172 0.95396 1.00598 0.97081 1.20986 0.96264 0.94773 0.98504 1.21161 1.01513 0.94475 1.00480 1.17628 0.95526 0.79356 0.99351 1.91502 1.90357 1.35886 1.94091 1.20997 0.96643 0.96307 1.02372 0.94881 0.96744 0.88924 0.92572 0.93743 0.90259 0.93044 0.86905 0.86142 0.84888 0.84798 0.84755 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.41 2.57 -69.08 -0.18 6.23 16 3 H 0.06 1.61 6.87 -51.93 -0.36 1.26 16 4 C -0.53 -13.33 7.99 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -24.14 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.98 -19.80 2.99 -115.85 -0.35 -20.14 16 13 C 0.11 1.84 9.19 59.85 0.55 2.39 16 14 S 2.63 49.03 5.73 -107.50 -0.62 48.41 16 15 O -0.97 -18.40 16.39 -57.54 -0.94 -19.34 16 16 O -0.95 -21.29 16.57 -57.54 -0.95 -22.24 16 17 C -0.66 -9.86 6.23 -26.69 -0.17 -10.03 16 18 H 0.17 2.64 8.14 -51.93 -0.42 2.22 16 19 C -0.12 -1.33 9.50 -26.70 -0.25 -1.58 16 20 C -0.08 -0.96 5.80 -91.77 -0.53 -1.49 16 21 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 22 C -0.02 -0.25 5.61 -104.63 -0.59 -0.84 16 23 C -0.12 -1.36 9.29 -39.57 -0.37 -1.73 16 24 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 25 C -0.16 -1.65 10.03 -39.51 -0.40 -2.04 16 26 C 0.10 1.23 7.30 -39.41 -0.29 0.94 16 27 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 28 C -0.14 -1.79 9.72 -39.52 -0.38 -2.18 16 29 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 2.40 6.07 -51.92 -0.32 2.08 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.38 7.02 -51.93 -0.36 1.02 16 35 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 36 H 0.11 1.03 6.19 -51.93 -0.32 0.71 16 37 H 0.12 1.27 7.68 -51.93 -0.40 0.87 16 38 H 0.13 1.24 6.03 -52.48 -0.32 0.93 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -31.15 356.37 -10.23 -41.38 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.35 Total: 3.44 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -3.04 Total: -26.67 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.28 Total: -43.65 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.90 Total: -41.58 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.62 Total: 48.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.15 -10.23 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.539 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds