Wall clock time and date at job start Tue Mar 31 2020 15:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47223 * 2 1 4 4 C 1.50703 * 109.47149 * 239.99540 * 2 1 3 5 5 H 1.07997 * 119.99965 * 239.99773 * 4 2 1 6 6 C 1.37872 * 119.99889 * 60.00339 * 4 2 1 7 7 N 1.31520 * 120.00006 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99915 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46681 * 90.00362 * 8 6 4 10 10 H 1.48499 * 109.46967 * 209.99628 * 8 6 4 11 11 H 1.48499 * 109.47269 * 330.00012 * 8 6 4 12 12 N 1.46506 * 109.46930 * 119.99790 * 2 1 3 13 13 C 1.46500 * 119.99901 * 59.99993 * 12 2 1 14 14 S 1.65598 * 119.99666 * 240.00102 * 12 2 1 15 15 O 1.42098 * 104.27587 * 153.92806 * 14 12 2 16 16 O 1.42096 * 104.27974 * 26.07048 * 14 12 2 17 17 C 1.81403 * 104.45042 * 269.99759 * 14 12 2 18 18 H 1.08997 * 115.54808 * 39.33214 * 17 14 12 19 19 C 1.53074 * 117.49498 * 253.60488 * 17 14 12 20 20 C 1.52995 * 59.98413 * 252.51398 * 19 17 14 21 21 H 1.09005 * 117.50247 * 107.50272 * 20 19 17 22 22 C 1.50702 * 117.50083 * 252.49909 * 20 19 17 23 23 C 1.38270 * 119.98561 * 9.02843 * 22 20 19 24 24 C 1.38224 * 120.05223 * 180.32259 * 23 22 20 25 25 C 1.38220 * 120.02601 * 359.67397 * 24 23 22 26 26 C 1.38447 * 119.97159 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.02523 * 179.97438 * 26 25 24 28 28 C 1.38172 * 119.98969 * 188.74246 * 22 20 19 29 29 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47361 * 300.00646 * 1 2 3 31 31 H 1.09008 * 109.46505 * 60.00431 * 1 2 3 32 32 H 0.96996 * 119.99690 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46849 * 270.00101 * 13 12 2 34 34 H 1.08996 * 109.47134 * 30.00225 * 13 12 2 35 35 H 1.08998 * 109.46930 * 150.00017 * 13 12 2 36 36 H 1.09001 * 117.51292 * 145.03507 * 19 17 14 37 37 H 1.09000 * 117.49156 * 0.02562 * 19 17 14 38 38 H 1.08005 * 119.97405 * 0.02562 * 23 22 20 39 39 H 1.07994 * 119.98833 * 179.69678 * 24 23 22 40 40 H 1.07998 * 120.01498 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.01574 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 2.7431 -0.5610 3.5157 16 8 2.6121 1.4797 2.1233 17 6 4.6649 -0.1729 1.7060 18 1 4.8025 -0.1460 0.6251 19 6 5.5293 -1.1512 2.5053 20 6 5.8082 0.3514 2.5771 21 1 5.5423 0.8693 3.4986 22 6 7.0388 0.8650 1.8749 23 6 7.7624 0.0269 1.0467 24 6 8.8950 0.4947 0.4072 25 6 9.3018 1.8030 0.5898 26 6 8.5746 2.6448 1.4139 27 9 8.9715 3.9236 1.5935 28 6 7.4402 2.1749 2.0543 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 0.7089 1.1611 -3.4844 33 1 0.7375 -2.1443 1.9994 34 1 1.5295 -2.5968 0.4710 35 1 2.4628 -2.5818 1.9865 36 1 6.2358 -1.7683 1.9501 37 1 5.0792 -1.6222 3.3792 38 1 7.4450 -0.9954 0.9031 39 1 9.4621 -0.1622 -0.2355 40 1 10.1865 2.1684 0.0897 41 1 6.8721 2.8309 2.6973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914063758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:07 Heat of formation + Delta-G solvation = -79.267495 kcal Electronic energy + Delta-G solvation = -25941.776492 eV Core-core repulsion = 22056.655365 eV Total energy + Delta-G solvation = -3885.121127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95059 -40.63546 -38.30665 -37.87528 -37.73003 -36.96450 -34.49326 -32.12449 -31.20148 -30.91085 -27.27395 -26.97870 -25.31858 -24.43188 -23.59544 -22.56440 -21.67737 -19.71055 -18.88094 -18.43314 -18.11498 -18.05816 -17.19515 -17.08598 -17.07556 -16.64261 -16.40979 -15.86499 -15.20083 -14.94737 -14.82299 -14.57040 -14.40480 -14.01370 -13.70538 -13.64904 -13.40067 -13.34886 -13.17504 -13.07630 -12.96757 -12.93044 -12.70889 -12.63967 -12.23795 -12.17830 -12.12223 -12.06362 -11.94622 -11.86167 -11.56994 -11.10277 -10.49502 -9.96102 -9.71521 -9.51248 -8.08413 -6.24253 -0.62965 0.05877 0.17253 1.46452 1.47344 1.56507 1.73977 2.19565 2.45698 2.65146 2.88659 3.10839 3.20042 3.33619 3.44415 3.55129 3.71505 3.82424 4.01435 4.06434 4.14284 4.15419 4.40295 4.60011 4.73285 4.78428 4.81389 4.84429 4.92256 4.97445 5.03750 5.05702 5.10101 5.17611 5.29980 5.31479 5.44735 5.61625 5.70901 5.87033 5.87362 6.10236 6.29515 6.86377 7.46059 8.96344 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.004438 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.641305 B = 6308.219402 C = 7650.457624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.270 3.730 3 H 0.023 0.977 4 C -0.531 4.531 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.990 5.990 13 C 0.099 3.901 14 S 2.635 3.365 15 O -0.978 6.978 16 O -1.002 7.002 17 C -0.668 4.668 18 H 0.162 0.838 19 C -0.090 4.090 20 C -0.077 4.077 21 H 0.131 0.869 22 C -0.037 4.037 23 C -0.127 4.127 24 C -0.084 4.084 25 C -0.155 4.155 26 C 0.078 3.922 27 F -0.149 7.149 28 C -0.162 4.162 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.069 0.931 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.077 -6.023 7.471 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.166 3.834 3 H 0.041 0.959 4 C -0.570 4.570 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.185 1.185 12 N -0.828 5.828 13 C -0.046 4.046 14 S 2.731 3.269 15 O -0.968 6.968 16 O -0.993 6.993 17 C -0.779 4.779 18 H 0.180 0.820 19 C -0.127 4.127 20 C -0.096 4.096 21 H 0.148 0.852 22 C -0.038 4.038 23 C -0.145 4.145 24 C -0.102 4.102 25 C -0.174 4.174 26 C 0.059 3.941 27 F -0.128 7.128 28 C -0.181 4.181 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.663 -5.379 8.102 18.436 hybrid contribution 0.093 0.428 -1.487 1.550 sum 15.756 -4.951 6.615 17.791 Atomic orbital electron populations 1.21936 0.98140 0.99991 0.99726 1.18406 0.91893 0.91513 0.81604 0.95880 1.21689 1.31681 1.13187 0.90478 0.90632 1.25745 0.95215 0.95575 1.02030 1.70037 1.37518 1.24108 1.24296 0.85539 0.79159 0.78089 0.78737 1.20124 1.21778 1.18490 1.57231 1.64403 1.22566 1.38636 1.21410 1.00644 0.80335 1.02213 1.03778 0.76699 0.72988 0.73402 1.93501 1.84892 1.75513 1.42936 1.93514 1.82347 1.36644 1.86793 1.32677 1.16188 1.18603 1.10450 0.81994 1.23320 0.98411 0.90544 1.00455 1.20977 0.91192 0.99625 0.97844 0.85164 1.18908 0.94633 0.92935 0.97322 1.21502 0.95375 1.01352 0.96223 1.21393 0.95900 0.94760 0.98105 1.21502 1.01752 0.94617 0.99516 1.17893 0.96190 0.79450 1.00522 1.91474 1.90462 1.36555 1.94290 1.21147 0.97166 0.96842 1.02954 0.93690 0.96596 0.91269 0.92808 0.93505 0.90506 0.89778 0.83761 0.84796 0.82822 0.81530 0.82629 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.78 8.97 71.98 0.65 -6.13 16 2 C 0.27 13.34 2.57 44.25 0.11 13.45 16 3 H 0.02 1.31 6.87 -2.39 -0.02 1.30 16 4 C -0.53 -26.53 7.99 25.60 0.20 -26.33 16 5 H 0.08 3.51 7.33 -2.91 -0.02 3.49 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -51.43 11.32 21.45 0.24 -51.19 16 8 Si 0.96 40.61 29.54 68.60 2.03 42.64 16 9 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 12 N -0.99 -39.91 2.99 -520.43 -1.56 -41.47 16 13 C 0.10 3.27 9.19 127.77 1.17 4.44 16 14 S 2.63 98.23 5.73 -56.49 -0.32 97.90 16 15 O -0.98 -36.11 16.39 -127.65 -2.09 -38.20 16 16 O -1.00 -46.86 16.57 -127.65 -2.12 -48.98 16 17 C -0.67 -18.81 6.23 30.62 0.19 -18.61 16 18 H 0.16 4.87 8.14 -2.39 -0.02 4.86 16 19 C -0.09 -1.70 9.50 30.62 0.29 -1.41 16 20 C -0.08 -1.78 5.80 -11.54 -0.07 -1.85 16 21 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 22 C -0.04 -0.85 5.61 -19.87 -0.11 -0.97 16 23 C -0.13 -2.34 9.29 22.27 0.21 -2.14 16 24 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 25 C -0.16 -2.88 10.03 22.32 0.22 -2.65 16 26 C 0.08 1.85 7.30 22.38 0.16 2.02 16 27 F -0.15 -3.79 17.27 44.97 0.78 -3.01 16 28 C -0.16 -3.97 9.72 22.31 0.22 -3.75 16 29 H 0.04 2.02 7.67 -2.39 -0.02 2.00 16 30 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.55 7.02 -2.39 -0.02 2.53 16 35 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 36 H 0.14 1.86 6.19 -2.39 -0.01 1.85 16 37 H 0.13 2.26 7.68 -2.39 -0.02 2.24 16 38 H 0.15 2.12 6.03 -2.91 -0.02 2.11 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -69.07 356.37 1.93 -67.15 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.05 Total: 19.05 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.92 Total: -43.89 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -1.32 Total: -92.65 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -4.21 Total: -87.18 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 98.23 SS G_CDS: -0.32 Total: 97.90 kcal Total: -69.07 1.93 -67.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.120 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds