Wall clock time and date at job start Tue Mar 31 2020 15:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46804 * 2 1 4 4 C 1.50698 * 109.46858 * 240.00436 * 2 1 3 5 5 H 1.08000 * 120.00108 * 239.99645 * 4 2 1 6 6 C 1.37884 * 120.00172 * 59.99797 * 4 2 1 7 7 N 1.31510 * 119.99679 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47360 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46620 * 120.00426 * 8 6 4 11 11 H 1.48499 * 109.47053 * 239.99921 * 8 6 4 12 12 N 1.46500 * 109.47260 * 120.00257 * 2 1 3 13 13 C 1.46496 * 119.99791 * 60.00064 * 12 2 1 14 14 S 1.65592 * 119.99861 * 239.99860 * 12 2 1 15 15 O 1.42100 * 104.27804 * 153.92984 * 14 12 2 16 16 O 1.42101 * 104.27991 * 26.07394 * 14 12 2 17 17 C 1.81396 * 104.45325 * 269.99978 * 14 12 2 18 18 H 1.08999 * 115.55948 * 325.70792 * 17 14 12 19 19 C 1.53002 * 117.49940 * 111.39022 * 17 14 12 20 20 C 1.53000 * 60.02940 * 107.50476 * 19 17 14 21 21 H 1.08999 * 117.49942 * 252.47315 * 20 19 17 22 22 C 1.50706 * 117.49681 * 107.47810 * 20 19 17 23 23 C 1.38265 * 119.98712 * 351.11734 * 22 20 19 24 24 C 1.38223 * 120.05236 * 179.72085 * 23 22 20 25 25 C 1.38227 * 120.02109 * 0.55433 * 24 23 22 26 26 C 1.38429 * 119.97498 * 359.72374 * 25 24 23 27 27 F 1.35098 * 120.02776 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98579 * 171.38959 * 22 20 19 29 29 H 1.08999 * 109.46733 * 299.99826 * 1 2 3 30 30 H 1.09001 * 109.47547 * 59.99655 * 1 2 3 31 31 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 32 32 H 0.97008 * 120.00102 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47094 * 269.99848 * 13 12 2 34 34 H 1.09000 * 109.47066 * 29.99865 * 13 12 2 35 35 H 1.08994 * 109.46978 * 149.99735 * 13 12 2 36 36 H 1.09002 * 117.49918 * 0.02562 * 19 17 14 37 37 H 1.09002 * 117.49754 * 215.00660 * 19 17 14 38 38 H 1.08005 * 119.97530 * 359.97438 * 23 22 20 39 39 H 1.08000 * 119.99032 * 180.27271 * 24 23 22 40 40 H 1.07999 * 120.00757 * 179.69801 * 25 24 23 41 41 H 1.07995 * 120.01144 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 3.1473 -2.2861 -3.6040 10 1 1.1675 -1.5862 -4.8166 11 1 3.1470 -0.1855 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4278 14 16 2.9705 0.1141 2.2861 15 8 2.7434 -0.5613 3.5155 16 8 2.6122 1.4795 2.1234 17 6 4.6649 -0.1729 1.7058 18 1 4.8469 -1.1452 1.2479 19 6 5.4326 1.0263 1.1459 20 6 5.8047 0.4518 2.5143 21 1 5.5367 1.0355 3.3949 22 6 7.0923 -0.3246 2.6162 23 6 7.7938 -0.6529 1.4708 24 6 8.9779 -1.3600 1.5631 25 6 9.4562 -1.7496 2.8001 26 6 8.7517 -1.4264 3.9471 27 9 9.2184 -1.8062 5.1567 28 6 7.5685 -0.7129 3.8538 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7094 1.1621 -3.4844 33 1 0.7377 -2.1444 1.9992 34 1 1.5296 -2.5968 0.4706 35 1 2.4630 -2.5819 1.9861 36 1 4.9196 1.9878 1.1267 37 1 6.1193 0.8430 0.3195 38 1 7.4184 -0.3531 0.5035 39 1 9.5273 -1.6121 0.6681 40 1 10.3789 -2.3063 2.8716 41 1 7.0179 -0.4605 4.7479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914063759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:11 Heat of formation + Delta-G solvation = -60.878228 kcal Electronic energy + Delta-G solvation = -25872.094287 eV Core-core repulsion = 21987.770579 eV Total energy + Delta-G solvation = -3884.323708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.08526 -39.77497 -36.96153 -36.53950 -36.17660 -35.39404 -32.63437 -31.32109 -30.38120 -29.09977 -25.56306 -25.20763 -24.38447 -23.42525 -22.70788 -20.87033 -20.61967 -18.26340 -17.77502 -17.06092 -16.70669 -16.44302 -16.36985 -16.09787 -15.77226 -15.38198 -15.01164 -14.57798 -14.08074 -13.69886 -13.50688 -13.22029 -13.04411 -12.79941 -12.72090 -12.30368 -12.09179 -12.00399 -11.83350 -11.59831 -11.40084 -11.27118 -11.22910 -11.09650 -11.00230 -10.90878 -10.86205 -10.43971 -10.39562 -10.21863 -10.06789 -9.29323 -9.12192 -8.82636 -8.52084 -7.93663 -6.13284 -4.22013 0.75700 0.91339 0.96879 2.99439 3.19699 3.28446 3.29854 3.37847 3.62354 3.91993 4.23750 4.31851 4.39509 4.46885 4.59098 4.61719 4.79199 4.91212 4.95095 5.12829 5.17177 5.17922 5.52291 5.60024 5.64416 5.77168 5.83914 5.85804 5.94605 6.08911 6.17692 6.27700 6.32471 6.64211 6.64855 6.86063 6.89523 7.11825 7.44515 7.59529 7.75834 8.02202 8.22921 8.81304 9.44510 10.91645 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.003875 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.639466 B = 7224.386765 C = 8401.547458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.979 5.979 13 C 0.105 3.895 14 S 2.632 3.368 15 O -0.970 6.970 16 O -0.953 6.953 17 C -0.661 4.661 18 H 0.159 0.841 19 C -0.105 4.105 20 C -0.083 4.083 21 H 0.124 0.876 22 C -0.019 4.019 23 C -0.125 4.125 24 C -0.087 4.087 25 C -0.159 4.159 26 C 0.099 3.901 27 F -0.140 7.140 28 C -0.146 4.146 29 H 0.013 0.987 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 -3.112 7.645 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.079 0.921 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.819 5.819 13 C -0.041 4.041 14 S 2.722 3.278 15 O -0.961 6.961 16 O -0.943 6.943 17 C -0.767 4.767 18 H 0.177 0.823 19 C -0.143 4.143 20 C -0.103 4.103 21 H 0.141 0.859 22 C -0.019 4.019 23 C -0.143 4.143 24 C -0.105 4.105 25 C -0.177 4.177 26 C 0.080 3.920 27 F -0.119 7.119 28 C -0.165 4.165 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.167 -2.536 8.290 15.765 hybrid contribution 0.814 -1.116 -1.242 1.857 sum 13.981 -3.651 7.048 16.078 Atomic orbital electron populations 1.22044 0.97861 0.99665 1.00810 1.18761 0.91967 0.92871 0.79972 0.92078 1.21438 1.31944 1.13132 0.90243 0.91895 1.24913 0.94936 0.94951 0.98941 1.69891 1.36167 1.22549 1.23719 0.86510 0.78690 0.79592 0.82983 1.19854 1.20947 1.20963 1.57375 1.62914 1.21499 1.40084 1.21214 0.99209 0.81874 1.01821 1.04171 0.75412 0.74291 0.73878 1.93531 1.83915 1.75818 1.42805 1.93571 1.80492 1.33853 1.86388 1.33103 1.19807 1.08240 1.15522 0.82304 1.22961 1.00273 0.95555 0.95478 1.20824 0.91284 1.00767 0.97408 0.85857 1.18872 0.94138 0.96431 0.92486 1.21242 0.95211 0.99002 0.98877 1.21009 0.95728 0.96733 0.97049 1.21159 1.01483 1.03413 0.91690 1.17631 0.94560 0.99327 0.80480 1.91501 1.88288 1.89453 1.42655 1.21002 0.95887 1.00608 0.98993 0.96748 0.88912 0.94921 0.92664 0.93649 0.90189 0.93136 0.85790 0.86745 0.84661 0.84765 0.84783 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.34 2.57 -69.08 -0.18 6.16 16 3 H 0.06 1.58 6.87 -51.92 -0.36 1.23 16 4 C -0.53 -13.09 7.99 -34.44 -0.28 -13.36 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.68 11.32 55.43 0.63 -23.06 16 8 Si 0.89 19.77 29.54 -169.99 -5.02 14.74 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.98 -19.82 2.99 -115.85 -0.35 -20.17 16 13 C 0.11 1.86 9.19 59.84 0.55 2.41 16 14 S 2.63 48.94 5.73 -107.50 -0.62 48.32 16 15 O -0.97 -19.36 17.09 -57.54 -0.98 -20.34 16 16 O -0.95 -20.26 15.86 -57.54 -0.91 -21.17 16 17 C -0.66 -9.79 6.23 -26.69 -0.17 -9.96 16 18 H 0.16 2.23 8.14 -51.93 -0.42 1.80 16 19 C -0.11 -1.38 9.49 -26.73 -0.25 -1.63 16 20 C -0.08 -1.05 5.81 -91.73 -0.53 -1.58 16 21 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 22 C -0.02 -0.22 5.61 -104.63 -0.59 -0.81 16 23 C -0.13 -1.32 9.29 -39.58 -0.37 -1.69 16 24 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 25 C -0.16 -1.52 10.03 -39.52 -0.40 -1.92 16 26 C 0.10 1.11 7.30 -39.42 -0.29 0.82 16 27 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 28 C -0.15 -1.68 9.72 -39.51 -0.38 -2.06 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 35 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 36 H 0.12 1.66 7.66 -51.93 -0.40 1.26 16 37 H 0.11 1.28 6.18 -51.93 -0.32 0.96 16 38 H 0.14 1.30 6.03 -52.48 -0.32 0.98 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -30.54 356.34 -10.23 -40.77 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.35 Total: 3.46 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -3.04 Total: -26.31 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.28 Total: -43.23 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.90 Total: -41.52 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 48.94 SS G_CDS: -0.62 Total: 48.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.54 -10.23 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.108 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds