Wall clock time and date at job start Tue Mar 31 2020 15:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.46497 * 119.99968 * 59.99779 * 12 2 1 14 14 S 1.65601 * 119.99824 * 239.99540 * 12 2 1 15 15 O 1.42104 * 104.27577 * 206.06763 * 14 12 2 16 16 O 1.42092 * 104.27704 * 333.93115 * 14 12 2 17 17 C 1.81401 * 104.44781 * 90.00066 * 14 12 2 18 18 H 1.09005 * 115.55008 * 39.33146 * 17 14 12 19 19 C 1.53001 * 117.49921 * 253.62087 * 17 14 12 20 20 C 1.53000 * 117.49875 * 184.99755 * 17 14 12 21 21 H 1.09007 * 117.49853 * 215.00481 * 20 17 14 22 22 C 1.50703 * 117.49867 * 0.02562 * 20 17 14 23 23 C 1.38270 * 119.98220 * 239.99770 * 22 20 17 24 24 C 1.38222 * 120.04370 * 179.97438 * 23 22 20 25 25 C 1.38223 * 120.03242 * 0.02562 * 24 23 22 26 26 C 1.38437 * 119.96973 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.02726 * 180.02562 * 26 25 24 28 28 C 1.38173 * 119.98556 * 59.72698 * 22 20 17 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 36 36 H 1.09000 * 117.49743 * 0.02562 * 19 17 14 37 37 H 1.08998 * 117.49834 * 145.02438 * 19 17 14 38 38 H 1.07999 * 119.97810 * 359.97438 * 23 22 20 39 39 H 1.08004 * 119.98710 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.01605 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.01479 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9705 0.1142 2.2862 15 8 3.7315 -0.9107 2.9104 16 8 3.6005 1.1301 1.5181 17 6 1.7965 0.8413 3.4624 18 1 0.9467 0.2124 3.7281 19 6 1.5613 2.3511 3.3839 20 6 2.3612 1.7609 4.5471 21 1 1.8829 1.7370 5.5263 22 6 3.8501 1.9937 4.5561 23 6 4.5978 1.6417 5.6646 24 6 5.9636 1.8541 5.6740 25 6 6.5833 2.4193 4.5754 26 6 5.8356 2.7721 3.4650 27 9 6.4403 3.3240 2.3903 28 6 4.4681 2.5536 3.4544 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 2.1118 2.9074 2.6252 37 1 0.5567 2.7158 3.5978 38 1 4.1144 1.2004 6.5237 39 1 6.5467 1.5792 6.5406 40 1 7.6505 2.5848 4.5828 41 1 3.8845 2.8240 2.5868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914063760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:14 Heat of formation + Delta-G solvation = -50.988181 kcal Electronic energy + Delta-G solvation = -26856.951154 eV Core-core repulsion = 22973.056310 eV Total energy + Delta-G solvation = -3883.894844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.72457 -39.75035 -36.96904 -36.46569 -36.16716 -35.31616 -32.56672 -30.82833 -30.53683 -29.07967 -25.59017 -25.15134 -24.38019 -23.34831 -22.55720 -20.90556 -20.51988 -18.28995 -17.83471 -16.93230 -16.46587 -16.34657 -16.09930 -15.78045 -15.44949 -15.40917 -15.05170 -14.46278 -14.06654 -13.63893 -13.51103 -13.14311 -13.06205 -12.89113 -12.59155 -12.26580 -11.97330 -11.80312 -11.65906 -11.53936 -11.33890 -11.23889 -11.10834 -11.07714 -10.93577 -10.89987 -10.76321 -10.51142 -10.27150 -10.21889 -9.92833 -9.23921 -8.95208 -8.68537 -8.42723 -7.92331 -6.04953 -4.10801 0.82061 0.95459 1.15698 3.01081 3.32684 3.36730 3.39564 3.45192 3.66230 4.13617 4.29238 4.31026 4.42493 4.51104 4.64645 4.75509 4.97556 5.00772 5.08725 5.21876 5.26676 5.29748 5.53485 5.58565 5.61825 5.74481 5.88537 5.98186 6.14085 6.14971 6.18527 6.35176 6.37202 6.61890 6.75279 6.79502 6.84121 7.01587 7.44585 7.64685 7.80551 8.05497 8.30001 8.90878 9.54583 11.00839 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.004459 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.927922 B = 6278.474019 C = 6920.886239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.981 5.981 13 C 0.107 3.893 14 S 2.627 3.373 15 O -0.965 6.965 16 O -0.941 6.941 17 C -0.679 4.679 18 H 0.157 0.843 19 C -0.115 4.115 20 C -0.064 4.064 21 H 0.132 0.868 22 C -0.079 4.079 23 C -0.109 4.109 24 C -0.096 4.096 25 C -0.152 4.152 26 C 0.111 3.889 27 F -0.132 7.132 28 C -0.154 4.154 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 3.071 17.153 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.165 3.835 3 H 0.079 0.921 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.821 5.821 13 C -0.039 4.039 14 S 2.718 3.282 15 O -0.956 6.956 16 O -0.932 6.932 17 C -0.784 4.784 18 H 0.175 0.825 19 C -0.152 4.152 20 C -0.084 4.084 21 H 0.149 0.851 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.114 4.114 25 C -0.171 4.171 26 C 0.091 3.909 27 F -0.111 7.111 28 C -0.173 4.173 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.917 3.254 16.965 17.519 hybrid contribution -0.456 -0.508 -0.841 1.084 sum 2.461 2.746 16.123 16.540 Atomic orbital electron populations 1.22163 0.98449 0.99791 1.00691 1.18758 0.91073 0.93231 0.80458 0.92075 1.21279 1.31470 1.12945 0.89965 0.92048 1.24885 0.94977 0.95026 0.98923 1.69837 1.36619 1.22746 1.23844 0.86569 0.79428 0.79581 0.81914 1.20240 1.21199 1.20133 1.57422 1.70597 1.19322 1.34766 1.21178 1.01761 0.82203 0.98786 1.04386 0.75120 0.74486 0.74238 1.93521 1.67331 1.55941 1.78766 1.93567 1.72152 1.60285 1.67161 1.33145 1.21238 1.05243 1.18777 0.82467 1.22980 1.02657 0.89799 0.99775 1.20720 0.90858 1.01173 0.95613 0.85055 1.19207 0.93597 1.00455 0.94683 1.21001 0.93978 0.99625 0.98071 1.20969 0.94460 0.97983 0.97959 1.21263 1.00832 1.01755 0.93210 1.17600 0.90967 0.97847 0.84449 1.91529 1.83283 1.82713 1.53541 1.21864 0.94538 1.00732 1.00182 0.88728 0.94722 0.97062 0.92676 0.93047 0.93356 0.90896 0.86196 0.86577 0.84939 0.84642 0.84509 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.06 16 2 C 0.27 6.55 2.57 -69.08 -0.18 6.37 16 3 H 0.06 1.63 6.87 -51.93 -0.36 1.27 16 4 C -0.52 -14.09 8.37 -34.44 -0.29 -14.37 16 5 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.98 -20.78 2.99 -115.85 -0.35 -21.12 16 13 C 0.11 1.97 9.44 59.85 0.56 2.53 16 14 S 2.63 52.07 4.43 -107.50 -0.48 51.60 16 15 O -0.97 -20.82 17.09 -57.54 -0.98 -21.80 16 16 O -0.94 -21.10 12.26 -57.54 -0.71 -21.80 16 17 C -0.68 -9.85 6.59 -26.73 -0.18 -10.03 16 18 H 0.16 1.94 8.14 -51.93 -0.42 1.51 16 19 C -0.11 -1.46 9.50 -26.73 -0.25 -1.72 16 20 C -0.06 -0.79 6.04 -91.77 -0.55 -1.34 16 21 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 22 C -0.08 -1.09 5.00 -104.63 -0.52 -1.62 16 23 C -0.11 -1.26 9.74 -39.58 -0.39 -1.65 16 24 C -0.10 -1.04 10.04 -39.59 -0.40 -1.43 16 25 C -0.15 -1.89 10.03 -39.51 -0.40 -2.29 16 26 C 0.11 1.74 7.30 -39.42 -0.29 1.45 16 27 F -0.13 -2.24 17.27 2.25 0.04 -2.20 16 28 C -0.15 -2.48 6.92 -39.51 -0.27 -2.76 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 30 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.07 1.27 6.43 -51.93 -0.33 0.93 16 36 H 0.12 1.65 5.85 -51.93 -0.30 1.35 16 37 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.17 2.84 4.20 -52.49 -0.22 2.62 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -32.62 346.71 -9.75 -42.37 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.20 Total: 3.80 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -2.91 Total: -28.26 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.28 Total: -45.25 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.69 Total: -43.60 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.48 Total: 51.60 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.62 -9.75 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.619 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds