Wall clock time and date at job start Tue Mar 31 2020 15:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.46497 * 119.99968 * 59.99779 * 12 2 1 14 14 S 1.65601 * 119.99824 * 239.99540 * 12 2 1 15 15 O 1.42104 * 104.27577 * 206.06763 * 14 12 2 16 16 O 1.42092 * 104.27704 * 333.93115 * 14 12 2 17 17 C 1.81401 * 104.44781 * 90.00066 * 14 12 2 18 18 H 1.09005 * 115.55008 * 39.33146 * 17 14 12 19 19 C 1.53001 * 117.49921 * 253.62087 * 17 14 12 20 20 C 1.53000 * 117.49875 * 184.99755 * 17 14 12 21 21 H 1.09007 * 117.49853 * 215.00481 * 20 17 14 22 22 C 1.50703 * 117.49867 * 0.02562 * 20 17 14 23 23 C 1.38270 * 119.98220 * 239.99770 * 22 20 17 24 24 C 1.38222 * 120.04370 * 179.97438 * 23 22 20 25 25 C 1.38223 * 120.03242 * 0.02562 * 24 23 22 26 26 C 1.38437 * 119.96973 * 359.97438 * 25 24 23 27 27 F 1.35099 * 120.02726 * 180.02562 * 26 25 24 28 28 C 1.38173 * 119.98556 * 59.72698 * 22 20 17 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47466 * 90.00240 * 13 12 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 13 12 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 13 12 2 36 36 H 1.09000 * 117.49743 * 0.02562 * 19 17 14 37 37 H 1.08998 * 117.49834 * 145.02438 * 19 17 14 38 38 H 1.07999 * 119.97810 * 359.97438 * 23 22 20 39 39 H 1.08004 * 119.98710 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.01605 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.01479 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9705 0.1142 2.2862 15 8 3.7315 -0.9107 2.9104 16 8 3.6005 1.1301 1.5181 17 6 1.7965 0.8413 3.4624 18 1 0.9467 0.2124 3.7281 19 6 1.5613 2.3511 3.3839 20 6 2.3612 1.7609 4.5471 21 1 1.8829 1.7370 5.5263 22 6 3.8501 1.9937 4.5561 23 6 4.5978 1.6417 5.6646 24 6 5.9636 1.8541 5.6740 25 6 6.5833 2.4193 4.5754 26 6 5.8356 2.7721 3.4650 27 9 6.4403 3.3240 2.3903 28 6 4.4681 2.5536 3.4544 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7087 1.1612 -3.4844 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 2.1118 2.9074 2.6252 37 1 0.5567 2.7158 3.5978 38 1 4.1144 1.2004 6.5237 39 1 6.5467 1.5792 6.5406 40 1 7.6505 2.5848 4.5828 41 1 3.8845 2.8240 2.5868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914063760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:13 Heat of formation + Delta-G solvation = -71.621214 kcal Electronic energy + Delta-G solvation = -26857.845869 eV Core-core repulsion = 22973.056310 eV Total energy + Delta-G solvation = -3884.789559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94293 -40.74784 -38.27280 -37.91108 -37.75821 -36.91703 -34.54062 -31.82683 -31.52963 -30.90362 -27.28990 -27.02898 -25.39394 -24.52157 -23.58405 -22.45796 -21.74814 -19.70220 -19.18326 -18.57501 -18.21927 -17.45962 -17.22226 -17.10301 -16.96000 -16.66568 -16.50114 -16.01716 -15.21088 -15.04809 -14.92370 -14.65411 -14.49412 -14.22583 -13.83664 -13.60772 -13.32623 -13.18805 -13.15267 -13.11540 -12.99063 -12.79727 -12.60118 -12.49764 -12.32274 -12.27343 -12.16563 -12.06593 -12.00876 -11.84351 -11.39532 -11.14501 -10.50698 -9.98349 -9.73686 -9.58721 -8.12751 -6.25613 -0.64327 -0.04209 0.13835 1.39510 1.42181 1.48894 1.74446 2.18266 2.42474 2.60622 2.97179 3.15108 3.15961 3.23678 3.37473 3.58511 3.67344 3.84502 4.05826 4.08455 4.13753 4.23363 4.35999 4.58052 4.65077 4.73122 4.77477 4.80867 4.95197 4.99263 5.02265 5.05198 5.13149 5.14573 5.16706 5.25788 5.36561 5.60236 5.73843 5.85996 5.88378 6.14828 6.31107 6.80580 7.42637 8.91002 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.004459 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.927922 B = 6278.474019 C = 6920.886239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.616 3.384 15 O -0.993 6.993 16 O -0.985 6.985 17 C -0.671 4.671 18 H 0.192 0.808 19 C -0.119 4.119 20 C -0.043 4.043 21 H 0.183 0.817 22 C -0.100 4.100 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.151 4.151 26 C 0.067 3.933 27 F -0.154 7.154 28 C -0.182 4.182 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.160 0.840 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 2.341 20.708 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.046 0.954 4 C -0.579 4.579 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.714 3.286 15 O -0.984 6.984 16 O -0.976 6.976 17 C -0.782 4.782 18 H 0.209 0.791 19 C -0.156 4.156 20 C -0.062 4.062 21 H 0.200 0.800 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.170 4.170 26 C 0.048 3.952 27 F -0.133 7.133 28 C -0.201 4.201 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.172 0.828 38 H 0.193 0.807 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.817 2.475 20.470 20.699 hybrid contribution -0.030 -0.219 -1.815 1.828 sum 1.787 2.256 18.655 18.876 Atomic orbital electron populations 1.21956 0.96644 1.00364 1.00887 1.18409 0.92273 0.91500 0.80972 0.95375 1.21604 1.31606 1.12918 0.91811 0.93331 1.25579 0.95232 0.95751 1.01430 1.69945 1.37178 1.23522 1.24384 0.85732 0.78313 0.79242 0.79085 1.19016 1.20249 1.20914 1.57300 1.70553 1.20586 1.34884 1.21361 1.01575 0.80661 1.00992 1.04293 0.75696 0.73825 0.74773 1.93472 1.68937 1.57074 1.78882 1.93533 1.74077 1.60883 1.69060 1.32611 1.20742 1.06453 1.18427 0.79065 1.23221 1.04618 0.87904 0.99862 1.21134 0.90040 0.97922 0.97092 0.79998 1.19555 0.94962 1.00822 0.94750 1.21583 0.94347 0.97840 0.98208 1.21561 0.94781 0.95992 0.98359 1.21651 1.01959 1.00837 0.92514 1.18114 0.91639 1.00113 0.85373 1.91459 1.83583 1.83395 1.54829 1.21868 0.94870 1.02621 1.00722 0.91355 0.93840 0.93931 0.92582 0.94704 0.89934 0.90001 0.88501 0.82836 0.80737 0.80213 0.82258 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 8.95 71.98 0.64 -5.57 16 2 C 0.27 13.73 2.57 44.25 0.11 13.85 16 3 H 0.03 1.60 6.87 -2.39 -0.02 1.58 16 4 C -0.54 -30.46 8.37 25.60 0.21 -30.25 16 5 H 0.05 2.78 7.65 -2.91 -0.02 2.75 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.92 11.32 21.44 0.24 -51.67 16 8 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 N -0.99 -42.64 2.99 -520.44 -1.56 -44.20 16 13 C 0.10 3.62 9.44 127.77 1.21 4.82 16 14 S 2.62 105.01 4.43 -56.49 -0.25 104.76 16 15 O -0.99 -43.04 17.09 -127.65 -2.18 -45.22 16 16 O -0.98 -47.25 12.26 -127.65 -1.57 -48.82 16 17 C -0.67 -17.61 6.59 30.59 0.20 -17.41 16 18 H 0.19 3.76 8.14 -2.38 -0.02 3.74 16 19 C -0.12 -2.75 9.50 30.60 0.29 -2.46 16 20 C -0.04 -0.88 6.04 -11.54 -0.07 -0.95 16 21 H 0.18 1.98 8.14 -2.38 -0.02 1.96 16 22 C -0.10 -2.58 5.00 -19.87 -0.10 -2.68 16 23 C -0.10 -1.96 9.74 22.27 0.22 -1.74 16 24 C -0.09 -1.61 10.04 22.26 0.22 -1.39 16 25 C -0.15 -3.61 10.03 22.31 0.22 -3.38 16 26 C 0.07 2.19 7.30 22.38 0.16 2.36 16 27 F -0.15 -5.71 17.27 44.97 0.78 -4.93 16 28 C -0.18 -6.07 6.92 22.31 0.15 -5.91 16 29 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 30 H 0.04 1.81 6.66 -2.39 -0.02 1.80 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.37 7.79 -2.39 -0.02 2.35 16 35 H 0.08 2.77 6.43 -2.39 -0.02 2.76 16 36 H 0.10 2.77 5.85 -2.39 -0.01 2.75 16 37 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.14 5.32 4.20 -2.91 -0.01 5.31 16 Total: -1.00 -77.29 346.71 2.48 -74.81 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.05 Total: 17.76 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 3.93 Total: -49.14 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -1.32 Total: -95.87 kcal Atomic # 8 Polarization: -90.29 SS G_CDS: -3.75 Total: -94.04 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.93 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 105.01 SS G_CDS: -0.25 Total: 104.76 kcal Total: -77.29 2.48 -74.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.188 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds