Wall clock time and date at job start Tue Mar 31 2020 15:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42098 * 104.28223 * 206.07246 * 14 12 2 16 16 O 1.42104 * 104.27294 * 333.93256 * 14 12 2 17 17 C 1.81406 * 104.44650 * 89.99795 * 14 12 2 18 18 H 1.08997 * 115.55039 * 325.59169 * 17 14 12 19 19 C 1.53000 * 117.49745 * 111.25847 * 17 14 12 20 20 C 1.53001 * 117.49867 * 179.91563 * 17 14 12 21 21 H 1.08996 * 117.49960 * 145.00084 * 20 17 14 22 22 C 1.50697 * 117.49668 * 0.02562 * 20 17 14 23 23 C 1.38271 * 119.98929 * 120.00045 * 22 20 17 24 24 C 1.38221 * 120.05361 * 179.97438 * 23 22 20 25 25 C 1.38215 * 120.02512 * 359.97438 * 24 23 22 26 26 C 1.38437 * 119.97657 * 0.03009 * 25 24 23 27 27 F 1.35102 * 120.02922 * 179.97438 * 26 25 24 28 28 C 1.38178 * 119.99115 * 299.72697 * 22 20 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 34 34 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 35 35 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 36 36 H 1.08996 * 117.50051 * 214.98549 * 19 17 14 37 37 H 1.09013 * 117.49719 * 359.97438 * 19 17 14 38 38 H 1.08000 * 119.97001 * 359.97438 * 23 22 20 39 39 H 1.08004 * 119.98744 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.01409 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.00623 * 359.97399 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7316 -0.9105 2.9105 16 8 3.6005 1.1303 1.5182 17 6 1.7963 0.8414 3.4625 18 1 0.8456 1.1649 3.0386 19 6 1.7801 0.2773 4.8846 20 6 2.3712 1.6638 4.6175 21 1 1.7988 2.5284 4.9535 22 6 3.8694 1.8082 4.6906 23 6 4.4462 3.0637 4.6359 24 6 5.8203 3.1977 4.7033 25 6 6.6193 2.0767 4.8261 26 6 6.0430 0.8191 4.8809 27 9 6.8231 -0.2774 5.0004 28 6 4.6661 0.6864 4.8180 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7089 1.1612 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2851 2.5002 35 1 0.6904 -2.3002 0.9847 36 1 0.8190 0.2300 5.3964 37 1 2.4748 -0.5311 5.1133 38 1 3.8226 3.9402 4.5404 39 1 6.2697 4.1789 4.6609 40 1 7.6929 2.1816 4.8792 41 1 4.2151 -0.2938 4.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914063761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:17 Heat of formation + Delta-G solvation = -52.539697 kcal Electronic energy + Delta-G solvation = -26729.447807 eV Core-core repulsion = 22845.485684 eV Total energy + Delta-G solvation = -3883.962123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.82582 -39.77904 -36.99191 -36.47435 -36.17392 -35.29251 -32.57197 -30.87711 -30.57624 -29.08688 -25.58870 -25.17451 -24.43137 -23.34015 -22.60012 -20.99501 -20.51728 -18.33776 -17.81910 -16.96424 -16.43238 -16.37276 -16.13758 -15.91432 -15.54154 -15.38449 -14.97532 -14.53685 -14.10322 -13.68554 -13.52243 -13.20723 -13.06554 -12.89478 -12.61418 -12.30318 -12.00484 -11.76285 -11.65018 -11.60515 -11.36975 -11.21834 -11.14920 -11.07677 -10.98634 -10.94538 -10.76887 -10.51251 -10.29811 -10.23352 -9.93664 -9.23680 -9.02464 -8.71916 -8.44243 -7.92427 -6.05776 -4.11701 0.82197 0.92937 1.10814 2.98990 3.30039 3.36787 3.40375 3.45452 3.59728 4.07994 4.23879 4.29101 4.41477 4.48549 4.63962 4.70781 4.94302 4.99435 5.07138 5.19585 5.23855 5.25808 5.49310 5.54149 5.60018 5.71852 5.80151 5.94747 6.06592 6.15692 6.16050 6.30774 6.37759 6.61835 6.73716 6.78110 6.78863 6.99354 7.43949 7.63693 7.79693 8.04493 8.28771 8.90460 9.53725 11.00218 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.004129 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.988740 B = 6780.406141 C = 7117.236894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.060 0.940 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.981 5.981 13 C 0.109 3.891 14 S 2.628 3.372 15 O -0.966 6.966 16 O -0.940 6.940 17 C -0.679 4.679 18 H 0.162 0.838 19 C -0.122 4.122 20 C -0.062 4.062 21 H 0.133 0.867 22 C -0.073 4.073 23 C -0.105 4.105 24 C -0.090 4.090 25 C -0.151 4.151 26 C 0.110 3.890 27 F -0.134 7.134 28 C -0.164 4.164 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 2.926 17.363 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.078 0.922 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.821 5.821 13 C -0.037 4.037 14 S 2.718 3.282 15 O -0.956 6.956 16 O -0.930 6.930 17 C -0.784 4.784 18 H 0.180 0.820 19 C -0.159 4.159 20 C -0.081 4.081 21 H 0.151 0.849 22 C -0.073 4.073 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.170 4.170 26 C 0.091 3.909 27 F -0.113 7.113 28 C -0.183 4.183 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.999 3.059 17.219 17.744 hybrid contribution -0.473 -0.462 -0.854 1.080 sum 2.526 2.597 16.365 16.761 Atomic orbital electron populations 1.22175 0.98399 0.99885 1.00618 1.18784 0.91111 0.93278 0.80667 0.92214 1.21312 1.31424 1.12915 0.89901 0.91903 1.24906 0.95006 0.95019 0.98991 1.69849 1.36714 1.22763 1.23770 0.86490 0.79347 0.79297 0.82279 1.20620 1.21089 1.19793 1.57417 1.70608 1.19456 1.34637 1.21167 1.01660 0.82035 0.98877 1.04389 0.75096 0.74605 0.74122 1.93501 1.67173 1.56476 1.78485 1.93594 1.72181 1.60797 1.66435 1.33266 1.21030 1.16786 1.07270 0.82006 1.22976 1.03924 0.96357 0.92638 1.20721 0.91298 0.97265 0.98849 0.84897 1.19197 0.93235 0.93564 1.01352 1.21038 0.95215 0.96770 0.99283 1.21009 0.93218 0.98513 0.98108 1.21256 1.01300 0.91205 1.03223 1.17572 0.88477 0.83074 1.01811 1.91514 1.74236 1.52347 1.93189 1.21685 0.92779 1.01144 1.02699 0.94552 0.88673 0.97248 0.92706 0.93077 0.93184 0.91011 0.86665 0.86522 0.84714 0.84463 0.84429 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 2 C 0.26 6.59 2.57 -69.09 -0.18 6.41 16 3 H 0.06 1.65 6.87 -51.93 -0.36 1.29 16 4 C -0.52 -14.18 8.37 -34.44 -0.29 -14.47 16 5 H 0.06 1.73 7.65 -52.49 -0.40 1.33 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.98 -20.89 2.99 -115.85 -0.35 -21.24 16 13 C 0.11 1.98 9.44 59.85 0.56 2.54 16 14 S 2.63 52.44 4.25 -107.50 -0.46 51.98 16 15 O -0.97 -19.47 13.29 -57.54 -0.76 -20.23 16 16 O -0.94 -22.67 16.57 -57.54 -0.95 -23.62 16 17 C -0.68 -9.92 6.59 -26.73 -0.18 -10.10 16 18 H 0.16 2.20 8.14 -51.93 -0.42 1.78 16 19 C -0.12 -1.38 9.50 -26.69 -0.25 -1.63 16 20 C -0.06 -0.76 6.04 -91.74 -0.55 -1.31 16 21 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 22 C -0.07 -1.01 4.98 -104.63 -0.52 -1.53 16 23 C -0.10 -1.26 9.74 -39.58 -0.39 -1.65 16 24 C -0.09 -1.00 10.04 -39.60 -0.40 -1.40 16 25 C -0.15 -1.86 10.03 -39.52 -0.40 -2.26 16 26 C 0.11 1.65 7.30 -39.42 -0.29 1.36 16 27 F -0.13 -2.10 17.27 2.25 0.04 -2.06 16 28 C -0.16 -2.50 7.12 -39.51 -0.28 -2.78 16 29 H 0.04 0.77 6.66 -51.93 -0.35 0.42 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 35 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.12 1.32 5.80 -51.92 -0.30 1.02 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.16 2.43 4.32 -52.49 -0.23 2.20 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -33.00 347.29 -9.76 -42.76 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.20 Total: 3.44 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -2.92 Total: -28.28 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.28 Total: -45.60 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.72 Total: -43.85 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.46 Total: 51.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.00 -9.76 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.779 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds