Wall clock time and date at job start Tue Mar 31 2020 15:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42098 * 104.28223 * 206.07246 * 14 12 2 16 16 O 1.42104 * 104.27294 * 333.93256 * 14 12 2 17 17 C 1.81406 * 104.44650 * 89.99795 * 14 12 2 18 18 H 1.08997 * 115.55039 * 325.59169 * 17 14 12 19 19 C 1.53000 * 117.49745 * 111.25847 * 17 14 12 20 20 C 1.53001 * 117.49867 * 179.91563 * 17 14 12 21 21 H 1.08996 * 117.49960 * 145.00084 * 20 17 14 22 22 C 1.50697 * 117.49668 * 0.02562 * 20 17 14 23 23 C 1.38271 * 119.98929 * 120.00045 * 22 20 17 24 24 C 1.38221 * 120.05361 * 179.97438 * 23 22 20 25 25 C 1.38215 * 120.02512 * 359.97438 * 24 23 22 26 26 C 1.38437 * 119.97657 * 0.03009 * 25 24 23 27 27 F 1.35102 * 120.02922 * 179.97438 * 26 25 24 28 28 C 1.38178 * 119.99115 * 299.72697 * 22 20 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 34 34 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 35 35 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 36 36 H 1.08996 * 117.50051 * 214.98549 * 19 17 14 37 37 H 1.09013 * 117.49719 * 359.97438 * 19 17 14 38 38 H 1.08000 * 119.97001 * 359.97438 * 23 22 20 39 39 H 1.08004 * 119.98744 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.01409 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.00623 * 359.97399 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7316 -0.9105 2.9105 16 8 3.6005 1.1303 1.5182 17 6 1.7963 0.8414 3.4625 18 1 0.8456 1.1649 3.0386 19 6 1.7801 0.2773 4.8846 20 6 2.3712 1.6638 4.6175 21 1 1.7988 2.5284 4.9535 22 6 3.8694 1.8082 4.6906 23 6 4.4462 3.0637 4.6359 24 6 5.8203 3.1977 4.7033 25 6 6.6193 2.0767 4.8261 26 6 6.0430 0.8191 4.8809 27 9 6.8231 -0.2774 5.0004 28 6 4.6661 0.6864 4.8180 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7089 1.1612 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2851 2.5002 35 1 0.6904 -2.3002 0.9847 36 1 0.8190 0.2300 5.3964 37 1 2.4748 -0.5311 5.1133 38 1 3.8226 3.9402 4.5404 39 1 6.2697 4.1789 4.6609 40 1 7.6929 2.1816 4.8792 41 1 4.2151 -0.2938 4.8655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914063761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:16 Heat of formation + Delta-G solvation = -73.404688 kcal Electronic energy + Delta-G solvation = -26730.352581 eV Core-core repulsion = 22845.485684 eV Total energy + Delta-G solvation = -3884.866896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.96626 -40.75439 -38.27209 -37.92647 -37.77728 -36.91962 -34.54796 -31.86046 -31.55086 -30.91368 -27.30453 -27.04221 -25.41956 -24.47784 -23.60710 -22.50656 -21.76795 -19.73465 -19.16915 -18.59997 -18.19059 -17.48228 -17.25599 -17.16466 -16.97798 -16.67501 -16.41831 -16.04902 -15.29519 -15.06722 -14.87948 -14.68481 -14.49420 -14.26686 -13.81157 -13.59335 -13.35882 -13.22759 -13.17506 -13.10257 -12.99543 -12.78123 -12.61556 -12.51543 -12.30191 -12.27000 -12.20369 -12.09244 -12.02899 -11.89789 -11.41995 -11.15291 -10.51802 -10.02827 -9.75096 -9.59502 -8.13688 -6.26969 -0.64816 -0.05456 0.10360 1.39443 1.41510 1.51266 1.74708 2.17276 2.42261 2.57577 2.94318 3.11767 3.13980 3.23699 3.38020 3.55497 3.65870 3.81089 4.03894 4.07135 4.11106 4.21953 4.33655 4.57498 4.65793 4.71810 4.74145 4.81144 4.93657 4.96811 5.01281 5.02058 5.08123 5.10672 5.17193 5.23859 5.34512 5.59291 5.72563 5.82937 5.86540 6.13079 6.29295 6.79559 7.41531 8.90586 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.004129 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.988740 B = 6780.406141 C = 7117.236894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.995 5.995 13 C 0.102 3.898 14 S 2.618 3.382 15 O -0.982 6.982 16 O -0.997 6.997 17 C -0.678 4.678 18 H 0.180 0.820 19 C -0.102 4.102 20 C -0.054 4.054 21 H 0.174 0.826 22 C -0.094 4.094 23 C -0.109 4.109 24 C -0.089 4.089 25 C -0.153 4.153 26 C 0.073 3.927 27 F -0.149 7.149 28 C -0.187 4.187 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.112 0.888 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 4.047 19.123 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.042 0.958 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.833 5.833 13 C -0.043 4.043 14 S 2.716 3.284 15 O -0.973 6.973 16 O -0.988 6.988 17 C -0.789 4.789 18 H 0.197 0.803 19 C -0.139 4.139 20 C -0.073 4.073 21 H 0.192 0.808 22 C -0.095 4.095 23 C -0.126 4.126 24 C -0.106 4.106 25 C -0.172 4.172 26 C 0.054 3.946 27 F -0.128 7.128 28 C -0.206 4.206 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.176 0.824 37 H 0.130 0.870 38 H 0.184 0.816 39 H 0.194 0.806 40 H 0.179 0.821 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.713 4.126 18.932 19.452 hybrid contribution 0.002 -0.751 -1.263 1.470 sum 1.716 3.375 17.669 18.070 Atomic orbital electron populations 1.21972 0.96513 1.00538 1.00874 1.18446 0.92405 0.91428 0.81307 0.95790 1.21618 1.31656 1.12919 0.91733 0.93222 1.25616 0.95217 0.95740 1.01539 1.69954 1.37228 1.23542 1.24422 0.85629 0.78705 0.78617 0.79141 1.19113 1.20504 1.20431 1.57287 1.70562 1.20759 1.34721 1.21346 1.01443 0.80395 1.01107 1.04218 0.75637 0.73948 0.74562 1.93480 1.68459 1.57020 1.78317 1.93518 1.74492 1.61906 1.68856 1.32648 1.19707 1.19572 1.06990 0.80279 1.23324 1.05713 0.95799 0.89105 1.21127 0.90766 0.99310 0.96092 0.80849 1.19532 0.94263 0.93843 1.01867 1.21564 0.96190 0.97188 0.97706 1.21539 0.93062 0.99728 0.96282 1.21644 1.02862 0.90536 1.02131 1.18018 0.88833 0.83831 1.03922 1.91465 1.74530 1.53194 1.93561 1.21781 0.93279 1.01516 1.04032 0.93607 0.91249 0.94046 0.92501 0.94686 0.89731 0.90171 0.82408 0.86992 0.81575 0.80624 0.82141 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 8.95 71.98 0.64 -5.61 16 2 C 0.27 13.67 2.57 44.24 0.11 13.79 16 3 H 0.02 1.39 6.87 -2.39 -0.02 1.38 16 4 C -0.54 -30.57 8.37 25.60 0.21 -30.35 16 5 H 0.05 2.85 7.65 -2.91 -0.02 2.83 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -51.93 11.32 21.45 0.24 -51.68 16 8 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 N -0.99 -42.88 2.99 -520.44 -1.56 -44.44 16 13 C 0.10 3.71 9.44 127.77 1.21 4.91 16 14 S 2.62 105.76 4.25 -56.49 -0.24 105.52 16 15 O -0.98 -40.66 13.29 -127.65 -1.70 -42.36 16 16 O -1.00 -50.12 16.57 -127.65 -2.12 -52.23 16 17 C -0.68 -18.10 6.59 30.59 0.20 -17.90 16 18 H 0.18 4.25 8.14 -2.39 -0.02 4.23 16 19 C -0.10 -1.93 9.50 30.62 0.29 -1.64 16 20 C -0.05 -1.12 6.04 -11.52 -0.07 -1.19 16 21 H 0.17 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.09 -2.44 4.98 -19.87 -0.10 -2.54 16 23 C -0.11 -2.33 9.74 22.27 0.22 -2.11 16 24 C -0.09 -1.74 10.04 22.26 0.22 -1.52 16 25 C -0.15 -3.63 10.03 22.31 0.22 -3.40 16 26 C 0.07 2.23 7.30 22.37 0.16 2.40 16 27 F -0.15 -4.89 17.27 44.97 0.78 -4.12 16 28 C -0.19 -5.72 7.12 22.31 0.16 -5.56 16 29 H 0.04 1.91 6.66 -2.39 -0.02 1.89 16 30 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 32 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 35 H 0.08 2.72 6.43 -2.39 -0.02 2.70 16 36 H 0.16 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.11 2.30 5.80 -2.38 -0.01 2.28 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.15 4.68 4.32 -2.91 -0.01 4.67 16 Total: -1.00 -76.63 347.29 2.43 -74.20 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.05 Total: 17.88 kcal Atomic # 6 Polarization: -53.17 SS G_CDS: 3.94 Total: -49.23 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -1.32 Total: -96.13 kcal Atomic # 8 Polarization: -90.78 SS G_CDS: -3.81 Total: -94.59 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 105.76 SS G_CDS: -0.24 Total: 105.52 kcal Total: -76.63 2.43 -74.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914063761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.798 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds