Wall clock time and date at job start Tue Mar 31 2020 14:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46702 * 2 1 4 4 H 1.08991 * 109.47533 * 305.05253 * 3 2 1 5 5 C 1.50700 * 109.46989 * 185.05500 * 3 2 1 6 6 H 1.08004 * 120.00604 * 239.99737 * 5 3 2 7 7 C 1.37879 * 119.99772 * 60.00109 * 5 3 2 8 8 N 1.31508 * 120.00390 * 359.97438 * 7 5 3 9 9 Si 1.86811 * 119.99807 * 180.27475 * 7 5 3 10 10 H 1.48496 * 109.47001 * 269.72075 * 9 7 5 11 11 H 1.48494 * 109.47076 * 29.72453 * 9 7 5 12 12 H 1.48502 * 109.46941 * 149.72469 * 9 7 5 13 13 N 1.46503 * 109.47422 * 65.06206 * 3 2 1 14 14 S 1.65599 * 119.99709 * 215.18067 * 13 3 2 15 15 O 1.42104 * 104.27661 * 180.66204 * 14 13 3 16 16 O 1.42096 * 104.27946 * 308.51977 * 14 13 3 17 17 C 1.81399 * 104.45099 * 64.59222 * 14 13 3 18 18 H 1.08997 * 115.55250 * 324.82754 * 17 14 13 19 19 C 1.52999 * 117.50120 * 110.53769 * 17 14 13 20 20 C 1.53000 * 60.00084 * 107.49243 * 19 17 14 21 21 H 1.09002 * 117.51388 * 252.51930 * 20 19 17 22 22 C 1.50693 * 117.49974 * 107.49616 * 20 19 17 23 23 C 1.38269 * 119.98711 * 171.37830 * 22 20 19 24 24 C 1.38225 * 120.05155 * 180.02562 * 23 22 20 25 25 C 1.38223 * 120.02578 * 359.96172 * 24 23 22 26 26 C 1.38442 * 119.97281 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.02174 * 179.97438 * 26 25 24 28 28 C 1.38174 * 119.98973 * 351.09712 * 22 20 19 29 29 H 1.08995 * 109.47632 * 304.73100 * 1 2 3 30 30 H 1.08997 * 109.46948 * 64.73690 * 1 2 3 31 31 H 1.09001 * 109.46939 * 184.73403 * 1 2 3 32 32 H 1.08990 * 109.47523 * 239.99931 * 2 1 3 33 33 H 1.09000 * 109.47085 * 119.99784 * 2 1 3 34 34 H 0.97003 * 120.00364 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00216 * 35.17065 * 13 3 2 36 36 H 1.09004 * 117.50271 * 214.98244 * 19 17 14 37 37 H 1.09001 * 117.49989 * 0.02562 * 19 17 14 38 38 H 1.07994 * 119.97351 * 0.02562 * 23 22 20 39 39 H 1.07998 * 119.98890 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.01327 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.00954 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9818 -0.8412 5 6 3.5417 1.4445 -0.1252 6 1 4.1477 1.8888 0.6505 7 6 4.1420 0.8789 -1.2301 8 7 3.4042 0.3374 -2.1745 9 14 6.0040 0.8745 -1.3816 10 1 6.4461 2.1042 -2.0870 11 1 6.6107 0.8355 -0.0269 12 1 6.4350 -0.3199 -2.1517 13 7 1.6536 2.0971 1.2524 14 16 1.2525 3.7038 1.2575 15 8 0.9561 3.9867 2.6181 16 8 2.3390 4.3383 0.5971 17 6 -0.2502 3.7984 0.2457 18 1 -0.2936 3.1089 -0.5973 19 6 -1.5632 4.1253 0.9598 20 6 -0.8963 5.1738 0.0672 21 1 -0.4182 6.0219 0.5575 22 6 -1.5443 5.4712 -1.2604 23 6 -1.0934 6.5292 -2.0279 24 6 -1.6872 6.8036 -3.2456 25 6 -2.7322 6.0198 -3.6977 26 6 -3.1843 4.9600 -2.9302 27 9 -4.2059 4.1937 -3.3709 28 6 -2.5851 4.6830 -1.7129 29 1 -0.3634 0.5854 0.8445 30 1 -0.3633 0.4386 -0.9294 31 1 -0.3633 -1.0242 0.0848 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8266 -0.0608 -2.9516 35 1 1.6326 1.5894 2.0787 36 1 -2.4708 3.6506 0.5868 37 1 -1.5241 4.2839 2.0375 38 1 -0.2767 7.1417 -1.6757 39 1 -1.3345 7.6305 -3.8441 40 1 -3.1957 6.2341 -4.6493 41 1 -2.9338 3.8536 -1.1154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914372611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:52 Heat of formation + Delta-G solvation = -72.764940 kcal Electronic energy + Delta-G solvation = -25948.979979 eV Core-core repulsion = 22064.140824 eV Total energy + Delta-G solvation = -3884.839155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.02728 -39.74604 -37.00371 -36.50307 -35.93397 -35.31006 -32.16426 -30.96133 -30.66269 -30.62644 -26.62238 -24.49710 -23.48029 -23.05617 -22.54316 -20.91017 -20.20925 -18.60705 -18.04293 -16.98675 -16.85912 -16.40784 -16.30285 -15.95896 -15.70840 -15.40955 -14.84474 -14.58759 -14.14649 -13.82964 -13.57604 -13.19880 -13.04396 -12.97380 -12.77073 -12.34963 -11.94524 -11.77661 -11.70426 -11.60185 -11.46385 -11.36142 -11.23359 -11.11365 -10.91108 -10.86826 -10.79351 -10.40356 -10.17548 -9.84879 -9.81559 -9.67513 -9.09028 -8.78365 -8.42365 -8.20691 -6.06295 -4.12012 0.80186 0.96967 1.01010 2.99148 3.32574 3.38504 3.42482 3.50761 3.62784 4.00913 4.18805 4.31622 4.43214 4.45071 4.57107 4.65444 4.81824 4.96264 5.02896 5.16264 5.21487 5.28567 5.46542 5.54539 5.74099 5.83656 5.86698 5.93092 6.05008 6.11995 6.12343 6.26513 6.29170 6.45397 6.69266 6.74854 6.88717 7.06779 7.55934 7.63759 7.89614 8.10526 8.25051 8.91771 9.54055 10.98279 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.004053 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.268373 B = 6907.437665 C = 7448.444173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.280 3.720 4 H 0.039 0.961 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.287 1.287 13 N -1.099 6.099 14 S 2.636 3.364 15 O -0.981 6.981 16 O -0.937 6.937 17 C -0.668 4.668 18 H 0.163 0.837 19 C -0.118 4.118 20 C -0.072 4.072 21 H 0.127 0.873 22 C -0.021 4.021 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.157 4.157 26 C 0.100 3.900 27 F -0.140 7.140 28 C -0.150 4.150 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.405 0.595 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 9.003 0.527 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.056 0.944 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.859 5.859 14 S 2.725 3.275 15 O -0.971 6.971 16 O -0.927 6.927 17 C -0.773 4.773 18 H 0.181 0.819 19 C -0.156 4.156 20 C -0.092 4.092 21 H 0.144 0.856 22 C -0.022 4.022 23 C -0.137 4.137 24 C -0.105 4.105 25 C -0.176 4.176 26 C 0.081 3.919 27 F -0.119 7.119 28 C -0.169 4.169 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.227 9.666 0.569 16.393 hybrid contribution 0.340 -0.929 -0.581 1.147 sum -12.887 8.737 -0.011 15.570 Atomic orbital electron populations 1.21868 0.99103 0.99666 1.00145 1.21890 0.91883 0.99531 1.03443 1.18536 0.94959 0.90115 0.78833 0.94353 1.21532 0.91289 1.37023 1.05770 0.91727 1.24899 0.98539 0.95003 0.95485 1.69829 1.35073 1.38882 1.09637 0.86504 0.85305 0.77458 0.78231 1.20508 1.19819 1.21288 1.55495 1.82789 1.29579 1.18022 1.04030 0.75328 0.74302 0.73877 1.93522 1.86483 1.84656 1.32470 1.93631 1.46830 1.75065 1.77207 1.33140 1.18320 1.06558 1.19272 0.81908 1.22969 0.93706 0.99620 0.99291 1.20766 1.01976 0.91068 0.95378 0.85561 1.18845 0.94335 0.94730 0.94262 1.21134 1.00177 0.97721 0.94633 1.21005 0.94751 0.99005 0.95757 1.21169 0.99541 0.96006 1.00883 1.17629 0.88039 0.91950 0.94286 1.91502 1.56781 1.74228 1.89372 1.21040 0.98090 1.01860 0.95865 0.94106 0.93837 0.94427 0.87583 0.93956 0.92747 0.76148 0.87037 0.86012 0.84742 0.84683 0.84750 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.85 37.16 0.37 -2.25 16 2 C -0.13 -2.72 5.37 -26.73 -0.14 -2.87 16 3 C 0.28 6.43 2.06 -69.08 -0.14 6.29 16 4 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 5 C -0.52 -13.85 8.82 -34.44 -0.30 -14.15 16 6 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 N -1.10 -21.31 4.72 -5.88 -0.03 -21.34 16 14 S 2.64 48.04 5.75 -107.50 -0.62 47.42 16 15 O -0.98 -18.41 17.37 -57.54 -1.00 -19.41 16 16 O -0.94 -21.20 17.80 -57.54 -1.02 -22.22 16 17 C -0.67 -9.65 5.97 -26.73 -0.16 -9.81 16 18 H 0.16 2.45 7.53 -51.93 -0.39 2.06 16 19 C -0.12 -1.33 9.49 -26.73 -0.25 -1.59 16 20 C -0.07 -0.89 5.81 -91.77 -0.53 -1.42 16 21 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 22 C -0.02 -0.26 5.61 -104.64 -0.59 -0.84 16 23 C -0.12 -1.29 9.74 -39.57 -0.39 -1.68 16 24 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 25 C -0.16 -1.62 10.03 -39.51 -0.40 -2.01 16 26 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 27 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 28 C -0.15 -1.79 9.27 -39.52 -0.37 -2.16 16 29 H 0.04 0.63 7.63 -51.93 -0.40 0.23 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 2.57 5.95 -51.93 -0.31 2.26 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.41 7.05 8.80 -34.47 -0.30 6.75 16 36 H 0.11 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.12 1.27 7.66 -51.93 -0.40 0.87 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.14 1.48 6.03 -52.48 -0.32 1.16 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -32.16 359.54 -10.60 -42.76 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.31 Total: 7.75 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -3.68 Total: -31.23 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.60 Total: -45.10 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.02 Total: -41.63 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.62 Total: 47.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.16 -10.60 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914372611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.004 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds