Wall clock time and date at job start Tue Mar 31 2020 14:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46702 * 2 1 4 4 H 1.08991 * 109.47533 * 305.05253 * 3 2 1 5 5 C 1.50700 * 109.46989 * 185.05500 * 3 2 1 6 6 H 1.08004 * 120.00604 * 239.99737 * 5 3 2 7 7 C 1.37879 * 119.99772 * 60.00109 * 5 3 2 8 8 N 1.31508 * 120.00390 * 359.97438 * 7 5 3 9 9 Si 1.86811 * 119.99807 * 180.27475 * 7 5 3 10 10 H 1.48496 * 109.47001 * 269.72075 * 9 7 5 11 11 H 1.48494 * 109.47076 * 29.72453 * 9 7 5 12 12 H 1.48502 * 109.46941 * 149.72469 * 9 7 5 13 13 N 1.46503 * 109.47422 * 65.06206 * 3 2 1 14 14 S 1.65599 * 119.99709 * 215.18067 * 13 3 2 15 15 O 1.42104 * 104.27661 * 180.66204 * 14 13 3 16 16 O 1.42096 * 104.27946 * 308.51977 * 14 13 3 17 17 C 1.81399 * 104.45099 * 64.59222 * 14 13 3 18 18 H 1.08997 * 115.55250 * 324.82754 * 17 14 13 19 19 C 1.52999 * 117.50120 * 110.53769 * 17 14 13 20 20 C 1.53000 * 60.00084 * 107.49243 * 19 17 14 21 21 H 1.09002 * 117.51388 * 252.51930 * 20 19 17 22 22 C 1.50693 * 117.49974 * 107.49616 * 20 19 17 23 23 C 1.38269 * 119.98711 * 171.37830 * 22 20 19 24 24 C 1.38225 * 120.05155 * 180.02562 * 23 22 20 25 25 C 1.38223 * 120.02578 * 359.96172 * 24 23 22 26 26 C 1.38442 * 119.97281 * 0.02562 * 25 24 23 27 27 F 1.35097 * 120.02174 * 179.97438 * 26 25 24 28 28 C 1.38174 * 119.98973 * 351.09712 * 22 20 19 29 29 H 1.08995 * 109.47632 * 304.73100 * 1 2 3 30 30 H 1.08997 * 109.46948 * 64.73690 * 1 2 3 31 31 H 1.09001 * 109.46939 * 184.73403 * 1 2 3 32 32 H 1.08990 * 109.47523 * 239.99931 * 2 1 3 33 33 H 1.09000 * 109.47085 * 119.99784 * 2 1 3 34 34 H 0.97003 * 120.00364 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00216 * 35.17065 * 13 3 2 36 36 H 1.09004 * 117.50271 * 214.98244 * 19 17 14 37 37 H 1.09001 * 117.49989 * 0.02562 * 19 17 14 38 38 H 1.07994 * 119.97351 * 0.02562 * 23 22 20 39 39 H 1.07998 * 119.98890 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.01327 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.00954 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9818 -0.8412 5 6 3.5417 1.4445 -0.1252 6 1 4.1477 1.8888 0.6505 7 6 4.1420 0.8789 -1.2301 8 7 3.4042 0.3374 -2.1745 9 14 6.0040 0.8745 -1.3816 10 1 6.4461 2.1042 -2.0870 11 1 6.6107 0.8355 -0.0269 12 1 6.4350 -0.3199 -2.1517 13 7 1.6536 2.0971 1.2524 14 16 1.2525 3.7038 1.2575 15 8 0.9561 3.9867 2.6181 16 8 2.3390 4.3383 0.5971 17 6 -0.2502 3.7984 0.2457 18 1 -0.2936 3.1089 -0.5973 19 6 -1.5632 4.1253 0.9598 20 6 -0.8963 5.1738 0.0672 21 1 -0.4182 6.0219 0.5575 22 6 -1.5443 5.4712 -1.2604 23 6 -1.0934 6.5292 -2.0279 24 6 -1.6872 6.8036 -3.2456 25 6 -2.7322 6.0198 -3.6977 26 6 -3.1843 4.9600 -2.9302 27 9 -4.2059 4.1937 -3.3709 28 6 -2.5851 4.6830 -1.7129 29 1 -0.3634 0.5854 0.8445 30 1 -0.3633 0.4386 -0.9294 31 1 -0.3633 -1.0242 0.0848 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8266 -0.0608 -2.9516 35 1 1.6326 1.5894 2.0787 36 1 -2.4708 3.6506 0.5868 37 1 -1.5241 4.2839 2.0375 38 1 -0.2767 7.1417 -1.6757 39 1 -1.3345 7.6305 -3.8441 40 1 -3.1957 6.2341 -4.6493 41 1 -2.9338 3.8536 -1.1154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914372611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:51 Heat of formation + Delta-G solvation = -92.967120 kcal Electronic energy + Delta-G solvation = -25949.856011 eV Core-core repulsion = 22064.140824 eV Total energy + Delta-G solvation = -3885.715187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.92914 -40.61785 -38.20441 -37.87945 -37.57461 -36.89261 -34.13587 -32.19212 -31.79967 -31.49009 -28.50904 -25.40124 -24.85432 -24.54326 -23.42205 -21.91836 -21.78609 -20.07497 -19.12132 -18.64041 -18.19974 -17.73902 -17.18497 -17.13953 -17.00994 -16.61746 -16.39863 -15.82007 -15.42582 -14.91685 -14.84844 -14.71121 -14.57322 -14.06917 -13.64386 -13.59002 -13.36859 -13.26923 -13.07095 -13.03125 -12.97637 -12.67639 -12.64899 -12.61478 -12.43289 -12.13737 -12.07097 -11.88150 -11.71597 -11.54730 -11.51090 -11.31255 -10.44815 -10.01894 -9.88366 -9.63392 -8.10299 -6.22147 -0.57644 0.07288 0.18426 1.40525 1.43031 1.51751 1.85697 2.24578 2.45597 2.65091 2.88559 3.16065 3.17773 3.33298 3.44201 3.57711 3.70963 3.88789 4.00915 4.15601 4.20361 4.38638 4.47333 4.53107 4.63499 4.70274 4.72230 4.80872 4.88566 4.94985 5.05860 5.11938 5.15292 5.32386 5.37829 5.40756 5.45787 5.68953 5.81897 5.88592 6.03192 6.30666 6.49085 6.84490 7.46032 8.91644 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.004053 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.268373 B = 6907.437665 C = 7448.444173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.286 3.714 4 H 0.023 0.977 5 C -0.539 4.539 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.276 1.276 13 N -1.101 6.101 14 S 2.643 3.357 15 O -0.988 6.988 16 O -0.992 6.992 17 C -0.671 4.671 18 H 0.159 0.841 19 C -0.097 4.097 20 C -0.070 4.070 21 H 0.140 0.860 22 C -0.039 4.039 23 C -0.128 4.128 24 C -0.085 4.085 25 C -0.156 4.156 26 C 0.079 3.921 27 F -0.148 7.148 28 C -0.158 4.158 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.413 0.587 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.238 9.695 0.462 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.181 3.819 4 H 0.040 0.960 5 C -0.579 4.579 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.201 1.201 13 N -0.861 5.861 14 S 2.738 3.262 15 O -0.979 6.979 16 O -0.982 6.982 17 C -0.781 4.781 18 H 0.177 0.823 19 C -0.134 4.134 20 C -0.089 4.089 21 H 0.158 0.842 22 C -0.039 4.039 23 C -0.146 4.146 24 C -0.103 4.103 25 C -0.175 4.175 26 C 0.060 3.940 27 F -0.127 7.127 28 C -0.177 4.177 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.248 0.752 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.756 10.340 0.551 18.027 hybrid contribution 0.752 -1.049 -0.581 1.416 sum -14.004 9.291 -0.030 16.806 Atomic orbital electron populations 1.21771 0.95822 1.01319 1.01036 1.21713 0.94826 0.97780 1.01965 1.18237 0.92807 0.91190 0.79672 0.95957 1.21861 0.93592 1.36933 1.05501 0.93562 1.25509 1.01897 0.94984 0.95452 1.69923 1.36125 1.39183 1.09812 0.85773 0.81507 0.77541 0.78156 1.20799 1.19729 1.20125 1.55283 1.83705 1.29765 1.17318 1.03490 0.75813 0.73206 0.73730 1.93503 1.86832 1.84436 1.33126 1.93564 1.50721 1.75894 1.78010 1.32588 1.17137 1.09154 1.19261 0.82319 1.23270 0.92443 0.97821 0.99911 1.21029 1.01231 0.90504 0.96185 0.84188 1.18914 0.94919 0.95633 0.94473 1.21465 1.00492 0.97596 0.95072 1.21365 0.94040 0.99438 0.95459 1.21499 0.99358 0.95183 1.01417 1.17886 0.88445 0.92779 0.94908 1.91479 1.57164 1.74559 1.89473 1.21177 0.98191 1.02143 0.96148 0.91953 0.93993 0.92591 0.90612 0.93847 0.92668 0.75248 0.84645 0.84713 0.83490 0.81739 0.82703 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.85 71.98 0.71 -4.00 16 2 C -0.12 -5.25 5.37 30.59 0.16 -5.08 16 3 C 0.29 13.38 2.06 44.24 0.09 13.48 16 4 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 5 C -0.54 -29.66 8.82 25.60 0.23 -29.44 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -50.39 11.29 21.45 0.24 -50.15 16 9 Si 0.94 44.28 29.54 68.60 2.03 46.30 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -1.10 -42.97 4.72 -172.52 -0.81 -43.79 16 14 S 2.64 96.32 5.75 -56.49 -0.32 96.00 16 15 O -0.99 -36.37 17.37 -127.65 -2.22 -38.59 16 16 O -0.99 -46.13 17.80 -127.65 -2.27 -48.40 16 17 C -0.67 -18.54 5.97 30.59 0.18 -18.36 16 18 H 0.16 4.65 7.53 -2.39 -0.02 4.63 16 19 C -0.10 -1.91 9.49 30.59 0.29 -1.62 16 20 C -0.07 -1.58 5.81 -11.54 -0.07 -1.64 16 21 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 22 C -0.04 -0.87 5.61 -19.87 -0.11 -0.98 16 23 C -0.13 -2.54 9.74 22.27 0.22 -2.33 16 24 C -0.09 -1.43 10.04 22.26 0.22 -1.20 16 25 C -0.16 -2.87 10.03 22.31 0.22 -2.64 16 26 C 0.08 1.77 7.30 22.38 0.16 1.93 16 27 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 28 C -0.16 -3.50 9.27 22.31 0.21 -3.30 16 29 H 0.06 1.78 7.63 -2.39 -0.02 1.76 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 3.73 5.95 -2.39 -0.01 3.71 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.41 14.33 8.80 -96.75 -0.85 13.48 16 36 H 0.14 2.06 6.18 -2.39 -0.01 2.05 16 37 H 0.13 2.37 7.66 -2.39 -0.02 2.35 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.15 2.83 6.03 -2.91 -0.02 2.81 16 Total: -1.00 -70.34 359.54 0.59 -69.75 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.21 Total: 25.22 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 2.97 Total: -53.57 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -0.57 Total: -93.93 kcal Atomic # 8 Polarization: -82.50 SS G_CDS: -4.49 Total: -86.99 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 96.32 SS G_CDS: -0.32 Total: 96.00 kcal Total: -70.34 0.59 -69.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914372611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.216 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds