Wall clock time and date at job start Tue Mar 31 2020 14:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47325 * 308.18348 * 3 2 1 5 5 C 1.50703 * 109.47199 * 188.18789 * 3 2 1 6 6 H 1.08003 * 119.99677 * 239.99846 * 5 3 2 7 7 C 1.37873 * 120.00305 * 59.99274 * 5 3 2 8 8 N 1.31520 * 119.99671 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00119 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46686 * 60.00543 * 9 7 5 11 11 H 1.48497 * 109.46864 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47138 * 300.00326 * 9 7 5 13 13 N 1.46500 * 109.47381 * 68.18630 * 3 2 1 14 14 S 1.65603 * 119.99953 * 212.51397 * 13 3 2 15 15 O 1.42097 * 104.27679 * 185.29722 * 14 13 3 16 16 O 1.42101 * 104.27466 * 313.15885 * 14 13 3 17 17 C 1.81404 * 104.44728 * 69.22603 * 14 13 3 18 18 H 1.09007 * 115.54857 * 58.35496 * 17 14 13 19 19 C 1.52998 * 117.50167 * 272.67976 * 17 14 13 20 20 C 1.52996 * 60.00208 * 252.51499 * 19 17 14 21 21 H 1.09002 * 117.49820 * 252.51284 * 20 19 17 22 22 C 1.50692 * 117.50225 * 107.49146 * 20 19 17 23 23 C 1.38269 * 119.99233 * 171.37725 * 22 20 19 24 24 C 1.38220 * 120.05343 * 179.97438 * 23 22 20 25 25 C 1.38220 * 120.02570 * 359.97438 * 24 23 22 26 26 C 1.38433 * 119.97528 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.02485 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98608 * 351.10168 * 22 20 19 29 29 H 1.08997 * 109.47045 * 64.59714 * 1 2 3 30 30 H 1.09002 * 109.46873 * 184.59892 * 1 2 3 31 31 H 1.08999 * 109.46797 * 304.59552 * 1 2 3 32 32 H 1.09000 * 109.47165 * 239.99652 * 2 1 3 33 33 H 1.09010 * 109.47050 * 119.99415 * 2 1 3 34 34 H 0.96999 * 119.99377 * 179.97438 * 8 7 5 35 35 H 0.96994 * 120.00371 * 32.51377 * 13 3 2 36 36 H 1.08997 * 117.49784 * 0.02562 * 19 17 14 37 37 H 1.08996 * 117.49664 * 144.99720 * 19 17 14 38 38 H 1.08000 * 119.96898 * 0.02562 * 23 22 20 39 39 H 1.07998 * 119.98633 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.01097 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.01120 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5622 1.9968 -0.8078 5 6 3.5334 1.4473 -0.2024 6 1 4.1787 1.8778 0.5491 7 6 4.0758 0.9022 -1.3467 8 7 3.2899 0.3784 -2.2619 9 14 5.9270 0.9076 -1.5971 10 1 6.5774 0.1520 -0.4966 11 1 6.2524 0.2680 -2.8972 12 1 6.4224 2.3074 -1.5969 13 7 1.7189 2.0740 1.2823 14 16 1.3840 3.6946 1.3463 15 8 1.2495 3.9701 2.7338 16 8 2.4158 4.2962 0.5764 17 6 -0.2154 3.8597 0.5065 18 1 -1.0341 3.2827 0.9368 19 6 -0.2005 4.0401 -1.0127 20 6 -0.5547 5.2202 -0.1057 21 1 -1.5968 5.5387 -0.0782 22 6 0.4653 6.3204 0.0350 23 6 0.1338 7.4902 0.6934 24 6 1.0686 8.5000 0.8236 25 6 2.3363 8.3412 0.2962 26 6 2.6694 7.1705 -0.3632 27 9 3.9083 7.0140 -0.8787 28 6 1.7334 6.1576 -0.4891 29 1 -0.3633 0.4408 -0.9283 30 1 -0.3633 -1.0244 0.0824 31 1 -0.3633 0.5835 0.8460 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.6715 -0.0048 -3.0672 35 1 1.7025 1.5430 2.0938 36 1 0.7704 4.0591 -1.5077 37 1 -1.0092 3.5818 -1.5819 38 1 -0.8561 7.6146 1.1069 39 1 0.8084 9.4134 1.3377 40 1 3.0666 9.1302 0.3984 41 1 1.9934 5.2422 -0.9998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914372612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:55 Heat of formation + Delta-G solvation = -57.653827 kcal Electronic energy + Delta-G solvation = -27112.964028 eV Core-core repulsion = 23228.780141 eV Total energy + Delta-G solvation = -3884.183888 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.46998 -39.62598 -36.92550 -36.32952 -35.91225 -35.30675 -32.15077 -30.74079 -30.51737 -30.33851 -26.59218 -24.25867 -23.26418 -23.01211 -22.38408 -20.75688 -20.17616 -18.63946 -17.86645 -16.95212 -16.48146 -16.25409 -15.98058 -15.65002 -15.40318 -15.21073 -14.97014 -14.38223 -13.98278 -13.67408 -13.36239 -13.18964 -12.97210 -12.90001 -12.51882 -12.15916 -11.88825 -11.68615 -11.66275 -11.38502 -11.33063 -11.20040 -11.02132 -10.94444 -10.87827 -10.78891 -10.73114 -10.22549 -10.11183 -9.82326 -9.80049 -9.65617 -8.61690 -8.43718 -8.39793 -8.17528 -6.05113 -4.10460 0.89370 1.12825 1.41874 3.10909 3.35540 3.38357 3.45117 3.59022 3.87837 4.32611 4.38585 4.45057 4.48173 4.58537 4.75895 4.90800 5.10759 5.14818 5.23710 5.27022 5.38865 5.49188 5.66136 5.76746 5.91677 6.04214 6.06229 6.11697 6.17367 6.28560 6.34643 6.40395 6.47017 6.57496 6.75261 6.89870 7.06451 7.08682 7.58208 7.63664 7.90182 8.12016 8.26811 8.93203 9.55531 10.99024 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.005744 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.620175 B = 4873.161702 C = 6129.246098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.282 3.718 4 H 0.043 0.957 5 C -0.514 4.514 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.274 1.274 13 N -1.102 6.102 14 S 2.628 3.372 15 O -0.981 6.981 16 O -0.928 6.928 17 C -0.676 4.676 18 H 0.156 0.844 19 C -0.112 4.112 20 C -0.060 4.060 21 H 0.129 0.871 22 C -0.102 4.102 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.148 4.148 26 C 0.099 3.901 27 F -0.134 7.134 28 C -0.091 4.091 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.402 0.598 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 10.118 2.683 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.178 3.822 4 H 0.060 0.940 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.861 5.861 14 S 2.718 3.282 15 O -0.971 6.971 16 O -0.918 6.918 17 C -0.782 4.782 18 H 0.173 0.827 19 C -0.149 4.149 20 C -0.079 4.079 21 H 0.147 0.853 22 C -0.103 4.103 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.167 4.167 26 C 0.079 3.921 27 F -0.113 7.113 28 C -0.110 4.110 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.336 10.773 2.696 14.508 hybrid contribution 0.505 -0.799 -0.047 0.947 sum -8.831 9.974 2.649 13.582 Atomic orbital electron populations 1.21846 0.99100 0.99480 1.00157 1.21899 0.91976 0.99660 1.03293 1.18539 0.95326 0.90395 0.77986 0.93976 1.21499 0.91656 1.37741 1.04470 0.91893 1.24863 0.98173 0.95043 0.95702 1.69822 1.34648 1.39785 1.09207 0.86617 0.85522 0.78586 0.77150 1.20331 1.21335 1.19929 1.55603 1.84903 1.28119 1.17465 1.04292 0.76043 0.73954 0.73924 1.93511 1.87678 1.84617 1.31315 1.93646 1.51447 1.74820 1.71903 1.32913 1.26819 1.08311 1.10171 0.82652 1.22990 1.05627 0.98308 0.87968 1.20697 0.99262 0.85154 1.02836 0.85327 1.19139 0.93728 0.95809 1.01628 1.20953 1.00080 0.92920 0.98813 1.20846 0.92642 0.99321 1.00291 1.21221 0.98210 0.97217 1.00064 1.17564 0.80907 0.95032 0.98548 1.91516 1.39154 1.95944 1.84663 1.21767 0.91389 0.98693 0.99168 0.93544 0.94534 0.94487 0.87466 0.94218 0.92745 0.76504 0.85989 0.86713 0.85373 0.85099 0.84970 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.86 37.16 0.37 -2.19 16 2 C -0.13 -2.72 5.37 -26.73 -0.14 -2.86 16 3 C 0.28 6.34 2.02 -69.08 -0.14 6.20 16 4 H 0.04 0.97 6.94 -51.93 -0.36 0.61 16 5 C -0.51 -13.54 8.61 -34.44 -0.30 -13.84 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.69 5.28 -17.82 -0.09 1.60 16 8 N -0.90 -23.84 11.29 55.43 0.63 -23.21 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -1.10 -21.69 4.88 -5.88 -0.03 -21.71 16 14 S 2.63 49.76 5.04 -107.50 -0.54 49.21 16 15 O -0.98 -20.62 18.08 -57.54 -1.04 -21.66 16 16 O -0.93 -19.99 11.79 -57.54 -0.68 -20.66 16 17 C -0.68 -9.78 6.53 -26.73 -0.17 -9.95 16 18 H 0.16 1.90 8.14 -51.93 -0.42 1.47 16 19 C -0.11 -1.51 8.76 -26.73 -0.23 -1.75 16 20 C -0.06 -0.76 6.04 -91.78 -0.55 -1.32 16 21 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 22 C -0.10 -1.48 5.00 -104.64 -0.52 -2.00 16 23 C -0.11 -1.34 9.74 -39.58 -0.39 -1.73 16 24 C -0.11 -1.32 10.04 -39.59 -0.40 -1.72 16 25 C -0.15 -2.00 10.03 -39.52 -0.40 -2.40 16 26 C 0.10 1.67 7.30 -39.42 -0.29 1.38 16 27 F -0.13 -2.50 17.27 2.25 0.04 -2.46 16 28 C -0.09 -1.55 6.05 -39.51 -0.24 -1.79 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.57 7.74 -51.93 -0.40 0.17 16 32 H 0.11 2.57 5.89 -51.93 -0.31 2.26 16 33 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.40 7.26 8.77 -34.47 -0.30 6.95 16 36 H 0.12 1.87 5.89 -51.93 -0.31 1.57 16 37 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 41 H 0.17 3.13 4.32 -52.48 -0.23 2.90 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.26 348.54 -10.15 -41.40 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.25 Total: 9.89 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -3.50 Total: -32.37 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.60 Total: -44.93 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.72 Total: -42.33 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.54 Total: 49.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.26 -10.15 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914372612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.253 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds