Wall clock time and date at job start Tue Mar 31 2020 14:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47325 * 308.18348 * 3 2 1 5 5 C 1.50703 * 109.47199 * 188.18789 * 3 2 1 6 6 H 1.08003 * 119.99677 * 239.99846 * 5 3 2 7 7 C 1.37873 * 120.00305 * 59.99274 * 5 3 2 8 8 N 1.31520 * 119.99671 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00119 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46686 * 60.00543 * 9 7 5 11 11 H 1.48497 * 109.46864 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47138 * 300.00326 * 9 7 5 13 13 N 1.46500 * 109.47381 * 68.18630 * 3 2 1 14 14 S 1.65603 * 119.99953 * 212.51397 * 13 3 2 15 15 O 1.42097 * 104.27679 * 185.29722 * 14 13 3 16 16 O 1.42101 * 104.27466 * 313.15885 * 14 13 3 17 17 C 1.81404 * 104.44728 * 69.22603 * 14 13 3 18 18 H 1.09007 * 115.54857 * 58.35496 * 17 14 13 19 19 C 1.52998 * 117.50167 * 272.67976 * 17 14 13 20 20 C 1.52996 * 60.00208 * 252.51499 * 19 17 14 21 21 H 1.09002 * 117.49820 * 252.51284 * 20 19 17 22 22 C 1.50692 * 117.50225 * 107.49146 * 20 19 17 23 23 C 1.38269 * 119.99233 * 171.37725 * 22 20 19 24 24 C 1.38220 * 120.05343 * 179.97438 * 23 22 20 25 25 C 1.38220 * 120.02570 * 359.97438 * 24 23 22 26 26 C 1.38433 * 119.97528 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.02485 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98608 * 351.10168 * 22 20 19 29 29 H 1.08997 * 109.47045 * 64.59714 * 1 2 3 30 30 H 1.09002 * 109.46873 * 184.59892 * 1 2 3 31 31 H 1.08999 * 109.46797 * 304.59552 * 1 2 3 32 32 H 1.09000 * 109.47165 * 239.99652 * 2 1 3 33 33 H 1.09010 * 109.47050 * 119.99415 * 2 1 3 34 34 H 0.96999 * 119.99377 * 179.97438 * 8 7 5 35 35 H 0.96994 * 120.00371 * 32.51377 * 13 3 2 36 36 H 1.08997 * 117.49784 * 0.02562 * 19 17 14 37 37 H 1.08996 * 117.49664 * 144.99720 * 19 17 14 38 38 H 1.08000 * 119.96898 * 0.02562 * 23 22 20 39 39 H 1.07998 * 119.98633 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.01097 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.01120 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5622 1.9968 -0.8078 5 6 3.5334 1.4473 -0.2024 6 1 4.1787 1.8778 0.5491 7 6 4.0758 0.9022 -1.3467 8 7 3.2899 0.3784 -2.2619 9 14 5.9270 0.9076 -1.5971 10 1 6.5774 0.1520 -0.4966 11 1 6.2524 0.2680 -2.8972 12 1 6.4224 2.3074 -1.5969 13 7 1.7189 2.0740 1.2823 14 16 1.3840 3.6946 1.3463 15 8 1.2495 3.9701 2.7338 16 8 2.4158 4.2962 0.5764 17 6 -0.2154 3.8597 0.5065 18 1 -1.0341 3.2827 0.9368 19 6 -0.2005 4.0401 -1.0127 20 6 -0.5547 5.2202 -0.1057 21 1 -1.5968 5.5387 -0.0782 22 6 0.4653 6.3204 0.0350 23 6 0.1338 7.4902 0.6934 24 6 1.0686 8.5000 0.8236 25 6 2.3363 8.3412 0.2962 26 6 2.6694 7.1705 -0.3632 27 9 3.9083 7.0140 -0.8787 28 6 1.7334 6.1576 -0.4891 29 1 -0.3633 0.4408 -0.9283 30 1 -0.3633 -1.0244 0.0824 31 1 -0.3633 0.5835 0.8460 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.6715 -0.0048 -3.0672 35 1 1.7025 1.5430 2.0938 36 1 0.7704 4.0591 -1.5077 37 1 -1.0092 3.5818 -1.5819 38 1 -0.8561 7.6146 1.1069 39 1 0.8084 9.4134 1.3377 40 1 3.0666 9.1302 0.3984 41 1 1.9934 5.2422 -0.9998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914372612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:54 Heat of formation + Delta-G solvation = -77.641546 kcal Electronic energy + Delta-G solvation = -27113.830761 eV Core-core repulsion = 23228.780141 eV Total energy + Delta-G solvation = -3885.050620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.79603 -40.69667 -38.25727 -37.63703 -37.60265 -36.85960 -34.11308 -32.20762 -31.66284 -31.41098 -28.46551 -25.32784 -24.83503 -24.39363 -23.48054 -22.00454 -21.68259 -20.08249 -19.13051 -18.61004 -18.22938 -17.48497 -17.17078 -17.09554 -16.71472 -16.52851 -16.52027 -15.87461 -15.34020 -15.00853 -14.86002 -14.60837 -14.53724 -14.12100 -13.71281 -13.53062 -13.35468 -13.11840 -13.03144 -12.99417 -12.95432 -12.67025 -12.61613 -12.38418 -12.23719 -12.08712 -12.03963 -11.87512 -11.62074 -11.55124 -11.41653 -11.19577 -10.41766 -9.93997 -9.69834 -9.55097 -8.09203 -6.19013 -0.53732 0.05919 0.33321 1.37875 1.40713 1.47702 1.85239 2.31504 2.45026 2.72871 3.03863 3.17384 3.29214 3.34005 3.44626 3.69481 3.84747 3.93264 4.17455 4.22470 4.34614 4.46620 4.52669 4.64240 4.65789 4.75538 4.80999 4.87199 4.92393 5.02945 5.16610 5.18662 5.31309 5.34899 5.41154 5.44874 5.48727 5.70857 5.85294 5.98251 6.03563 6.34126 6.48320 6.86014 7.47977 8.92107 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.005744 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.620175 B = 4873.161702 C = 6129.246098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.289 3.711 4 H 0.036 0.964 5 C -0.534 4.534 6 H 0.039 0.961 7 C 0.027 3.973 8 N -0.905 5.905 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.288 1.288 13 N -1.106 6.106 14 S 2.618 3.382 15 O -1.008 7.008 16 O -0.967 6.967 17 C -0.665 4.665 18 H 0.191 0.809 19 C -0.118 4.118 20 C -0.039 4.039 21 H 0.179 0.821 22 C -0.120 4.120 23 C -0.101 4.101 24 C -0.106 4.106 25 C -0.148 4.148 26 C 0.053 3.947 27 F -0.159 7.159 28 C -0.115 4.115 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.407 0.593 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 11.411 3.457 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.184 3.816 4 H 0.054 0.946 5 C -0.574 4.574 6 H 0.057 0.943 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.214 1.214 13 N -0.864 5.864 14 S 2.715 3.285 15 O -0.998 6.998 16 O -0.956 6.956 17 C -0.777 4.777 18 H 0.208 0.792 19 C -0.156 4.156 20 C -0.058 4.058 21 H 0.196 0.804 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.166 4.166 26 C 0.033 3.967 27 F -0.138 7.138 28 C -0.135 4.135 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.111 0.889 37 H 0.165 0.835 38 H 0.190 0.810 39 H 0.193 0.807 40 H 0.171 0.829 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.821 12.038 3.506 17.933 hybrid contribution 1.585 -1.080 -0.278 1.938 sum -11.236 10.958 3.228 16.023 Atomic orbital electron populations 1.21752 0.95620 1.01168 1.01253 1.21741 0.95128 0.97940 1.01729 1.18262 0.92904 0.91453 0.78947 0.94634 1.21787 0.93997 1.37488 1.04086 0.94305 1.25364 1.00876 0.95221 0.95831 1.69891 1.35348 1.40017 1.09250 0.85995 0.82570 0.77712 0.77658 1.19864 1.20020 1.21405 1.55428 1.85903 1.28340 1.16723 1.04244 0.77544 0.73155 0.73526 1.93469 1.88619 1.84657 1.33074 1.93644 1.54744 1.75159 1.72098 1.32479 1.23550 1.11324 1.10350 0.79205 1.23119 1.05467 0.99612 0.87369 1.21075 1.01005 0.83626 1.00122 0.80369 1.19466 0.93007 0.97606 1.01953 1.21523 1.01985 0.91529 0.96836 1.21422 0.91298 1.00734 0.98877 1.21573 0.99865 0.96256 0.98921 1.18092 0.80432 0.97077 1.01060 1.91437 1.40711 1.96264 1.85406 1.21690 0.93190 0.97983 1.00598 0.93205 0.92732 0.92429 0.90387 0.94419 0.92679 0.75944 0.88916 0.83454 0.81046 0.80717 0.82914 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.86 71.98 0.71 -3.84 16 2 C -0.13 -5.31 5.37 30.59 0.16 -5.15 16 3 C 0.29 13.35 2.02 44.25 0.09 13.44 16 4 H 0.04 1.69 6.94 -2.39 -0.02 1.68 16 5 C -0.53 -29.41 8.61 25.60 0.22 -29.19 16 6 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 7 C 0.03 1.48 5.28 84.65 0.45 1.93 16 8 N -0.91 -49.36 11.29 21.45 0.24 -49.12 16 9 Si 0.93 45.13 29.54 68.60 2.03 47.15 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 13 N -1.11 -44.29 4.88 -172.52 -0.84 -45.13 16 14 S 2.62 100.10 5.04 -56.49 -0.28 99.82 16 15 O -1.01 -42.40 18.08 -127.65 -2.31 -44.70 16 16 O -0.97 -44.13 11.79 -127.65 -1.51 -45.64 16 17 C -0.67 -17.45 6.53 30.59 0.20 -17.25 16 18 H 0.19 3.72 8.14 -2.38 -0.02 3.70 16 19 C -0.12 -2.97 8.76 30.59 0.27 -2.70 16 20 C -0.04 -0.84 6.04 -11.54 -0.07 -0.91 16 21 H 0.18 2.18 8.14 -2.39 -0.02 2.16 16 22 C -0.12 -3.22 5.00 -19.88 -0.10 -3.32 16 23 C -0.10 -2.06 9.74 22.27 0.22 -1.84 16 24 C -0.11 -2.08 10.04 22.26 0.22 -1.86 16 25 C -0.15 -3.84 10.03 22.31 0.22 -3.62 16 26 C 0.05 1.86 7.30 22.38 0.16 2.02 16 27 F -0.16 -6.47 17.27 44.97 0.78 -5.69 16 28 C -0.12 -4.06 6.05 22.31 0.14 -3.93 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.61 7.74 -2.39 -0.02 1.59 16 32 H 0.08 3.79 5.89 -2.39 -0.01 3.78 16 33 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.41 14.93 8.77 -96.75 -0.85 14.08 16 36 H 0.09 2.96 5.89 -2.39 -0.01 2.94 16 37 H 0.15 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.14 5.70 4.32 -2.91 -0.01 5.68 16 Total: -1.00 -73.39 348.54 1.21 -72.18 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.22 Total: 27.35 kcal Atomic # 6 Polarization: -59.11 SS G_CDS: 2.89 Total: -56.22 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -0.60 Total: -94.25 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -3.81 Total: -90.34 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.78 Total: -5.69 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 100.10 SS G_CDS: -0.28 Total: 99.82 kcal Total: -73.39 1.21 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914372612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.464 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds