Wall clock time and date at job start Tue Mar 31 2020 14:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00408 * 2 1 4 4 N 1.46501 * 109.47211 * 124.99716 * 3 2 1 5 5 C 1.46500 * 120.00219 * 274.99925 * 4 3 2 6 6 C 1.50698 * 109.47429 * 275.00296 * 5 4 3 7 7 H 1.07995 * 119.99644 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99879 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99668 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00119 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46730 * 90.00326 * 10 8 6 12 12 H 1.48496 * 109.46843 * 209.99922 * 10 8 6 13 13 H 1.48496 * 109.47015 * 330.00532 * 10 8 6 14 14 S 1.65608 * 119.99650 * 95.00329 * 4 3 2 15 15 O 1.42102 * 104.27363 * 206.06992 * 14 4 3 16 16 O 1.42097 * 104.27711 * 333.92606 * 14 4 3 17 17 C 1.81401 * 104.44945 * 89.99952 * 14 4 3 18 18 C 1.52998 * 109.46866 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.46802 * 179.97438 * 18 17 14 20 20 C 1.38265 * 119.99028 * 269.72986 * 19 18 17 21 21 C 1.38225 * 120.05090 * 179.73017 * 20 19 18 22 22 C 1.38219 * 120.02765 * 0.54067 * 21 20 19 23 23 C 1.38441 * 119.97322 * 359.73190 * 22 21 20 24 24 F 1.35100 * 120.02540 * 180.02562 * 23 22 21 25 25 C 1.38177 * 119.98667 * 90.00336 * 19 18 17 26 26 H 1.08000 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.00070 * 180.02562 * 1 2 3 28 28 H 1.08009 * 119.99979 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47059 * 5.00252 * 3 2 1 30 30 H 1.09000 * 109.47515 * 244.99904 * 3 2 1 31 31 H 1.08994 * 109.46638 * 35.00405 * 5 4 3 32 32 H 1.09005 * 109.46874 * 155.00013 * 5 4 3 33 33 H 0.97003 * 119.99404 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47000 * 300.00248 * 17 14 4 35 35 H 1.09006 * 109.46904 * 59.99979 * 17 14 4 36 36 H 1.08993 * 109.47317 * 300.00064 * 18 17 14 37 37 H 1.08998 * 109.47275 * 60.00757 * 18 17 14 38 38 H 1.08001 * 119.97489 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.98516 * 180.27495 * 21 20 19 40 40 H 1.07995 * 120.01329 * 179.75030 * 22 21 20 41 41 H 1.08005 * 120.01445 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9555 3.8412 1.7042 8 6 2.2100 3.9028 3.7035 9 7 2.2712 5.2140 3.7841 10 14 1.5944 2.9052 5.1579 11 1 2.7395 2.5486 6.0337 12 1 0.6127 3.7091 5.9294 13 1 0.9419 1.6650 4.6668 14 16 4.5714 0.8757 0.9173 15 8 4.9848 0.4305 2.2019 16 8 4.5315 -0.0151 -0.1891 17 6 5.4292 2.4099 0.4687 18 6 6.9136 2.1166 0.2425 19 6 7.6261 3.3911 -0.1307 20 6 7.7387 3.7562 -1.4595 21 6 8.3870 4.9277 -1.8029 22 6 8.9335 5.7298 -0.8188 23 6 8.8264 5.3624 0.5116 24 9 9.3596 6.1459 1.4744 25 6 8.1717 4.1913 0.8548 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9314 31 1 1.4984 1.4371 2.5982 32 1 3.1614 1.3203 3.2221 33 1 1.9970 5.6631 4.5991 34 1 4.9950 2.8150 -0.4453 35 1 5.3212 3.1355 1.2750 36 1 7.3475 1.7118 1.1568 37 1 7.0220 1.3909 -0.5635 38 1 7.3162 3.1277 -2.2295 39 1 8.4705 5.2141 -2.8409 40 1 9.4435 6.6430 -1.0877 41 1 8.0872 3.9039 1.8925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915816523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:14 Heat of formation + Delta-G solvation = -73.994054 kcal Electronic energy + Delta-G solvation = -25628.023154 eV Core-core repulsion = 21743.130701 eV Total energy + Delta-G solvation = -3884.892453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.90670 -39.30323 -36.75816 -36.48911 -35.47722 -34.33011 -33.23226 -32.03270 -30.70902 -29.67146 -28.13257 -25.08426 -24.55117 -22.82525 -21.99571 -21.23002 -19.78021 -18.31061 -17.50903 -17.00291 -16.82953 -16.54047 -16.26577 -15.98916 -15.98034 -15.57497 -14.93221 -14.35170 -14.26419 -13.94820 -13.81950 -13.48000 -13.13162 -13.09340 -13.05411 -12.61018 -12.22047 -11.99304 -11.96319 -11.93706 -11.68594 -11.52216 -11.36617 -11.35190 -11.19319 -11.02151 -10.75479 -10.51800 -10.22547 -10.21946 -9.66521 -9.14617 -9.05820 -8.76224 -8.69684 -8.15813 -6.21334 -4.23224 0.70097 1.06765 1.11569 2.51436 3.21850 3.26769 3.32935 3.35323 3.46544 4.13113 4.24866 4.31617 4.53577 4.55578 4.66395 4.85930 4.93356 5.00861 5.09190 5.12630 5.21979 5.26056 5.37603 5.40967 5.58563 5.61061 5.76062 5.95744 6.01558 6.03649 6.10398 6.17516 6.20154 6.32457 6.38778 6.79446 6.84248 6.90153 6.94242 7.10301 7.32856 7.49432 8.33619 8.79150 9.39358 10.90712 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004414 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.045595 B = 6341.231032 C = 8002.884275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.156 3.844 4 N -0.975 5.975 5 C 0.213 3.787 6 C -0.550 4.550 7 H 0.080 0.920 8 C 0.078 3.922 9 N -0.892 5.892 10 Si 0.869 3.131 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.609 3.391 15 O -0.956 6.956 16 O -0.971 6.971 17 C -0.628 4.628 18 C -0.073 4.073 19 C -0.040 4.040 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.160 4.160 23 C 0.102 3.898 24 F -0.140 7.140 25 C -0.147 4.147 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -3.545 -11.193 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.180 4.180 3 C 0.030 3.970 4 N -0.812 5.812 5 C 0.089 3.911 6 C -0.588 4.588 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.529 5.529 10 Si 0.695 3.305 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.703 3.297 15 O -0.947 6.947 16 O -0.962 6.962 17 C -0.756 4.756 18 C -0.112 4.112 19 C -0.041 4.041 20 C -0.146 4.146 21 C -0.108 4.108 22 C -0.179 4.179 23 C 0.083 3.917 24 F -0.118 7.118 25 C -0.165 4.165 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.615 -4.211 -10.907 14.523 hybrid contribution -0.390 0.737 0.957 1.269 sum 8.225 -3.474 -9.950 13.369 Atomic orbital electron populations 1.23806 0.95837 1.01633 1.01507 1.23461 0.96267 0.99414 0.98835 1.20227 0.93221 0.95618 0.87931 1.57155 1.24338 1.82772 1.16901 1.19626 0.96736 0.95988 0.78705 1.21463 1.45840 0.89911 1.01627 0.90218 1.24847 0.94647 0.94752 0.98348 1.69893 1.47224 1.07761 1.28058 0.86947 0.79569 0.80755 0.83214 1.19624 1.20992 1.18638 1.04886 0.74218 0.76541 0.74104 1.93558 1.81954 1.79369 1.39784 1.93538 1.86207 1.60894 1.55545 1.30788 1.05829 1.25486 1.13472 1.20349 0.91749 0.95483 1.03593 1.19491 0.95944 0.95784 0.92889 1.21147 1.00226 0.97517 0.95752 1.20970 0.96663 0.93923 0.99228 1.21136 1.03671 1.01857 0.91255 1.17689 0.97809 0.90529 0.85686 1.91507 1.84068 1.73447 1.62799 1.21148 0.99906 0.94264 1.01221 0.88333 0.88874 0.87359 0.89279 0.90496 0.94264 0.93544 0.92391 0.85251 0.83291 0.89179 0.89330 0.85116 0.84980 0.84890 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 14.32 29.01 0.42 -2.18 16 2 C -0.16 -2.47 9.84 -36.03 -0.35 -2.82 16 3 C 0.16 2.55 5.69 -5.20 -0.03 2.52 16 4 N -0.98 -18.57 2.68 -116.95 -0.31 -18.88 16 5 C 0.21 4.81 4.48 -5.19 -0.02 4.79 16 6 C -0.55 -14.12 9.94 -34.44 -0.34 -14.47 16 7 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 8 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 10 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 S 2.61 45.96 5.37 -107.50 -0.58 45.39 16 15 O -0.96 -19.92 16.53 -57.54 -0.95 -20.87 16 16 O -0.97 -17.43 16.99 -57.54 -0.98 -18.41 16 17 C -0.63 -9.25 6.16 37.16 0.23 -9.02 16 18 C -0.07 -0.92 5.35 -27.88 -0.15 -1.07 16 19 C -0.04 -0.50 5.13 -104.63 -0.54 -1.04 16 20 C -0.13 -1.38 9.70 -39.58 -0.38 -1.76 16 21 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 22 C -0.16 -1.77 10.03 -39.51 -0.40 -2.16 16 23 C 0.10 1.35 7.30 -39.42 -0.29 1.06 16 24 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 25 C -0.15 -1.97 9.68 -39.51 -0.38 -2.35 16 26 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 27 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.09 1.46 7.76 -51.93 -0.40 1.06 16 30 H 0.08 1.07 7.61 -51.93 -0.40 0.68 16 31 H 0.04 0.89 7.17 -51.93 -0.37 0.51 16 32 H 0.05 1.09 6.24 -51.93 -0.32 0.77 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.15 2.47 8.14 -51.92 -0.42 2.05 16 36 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -32.01 367.94 -9.59 -41.60 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.72 Total: 4.44 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -2.74 Total: -27.77 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.46 Total: -43.87 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.93 Total: -39.28 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 45.96 SS G_CDS: -0.58 Total: 45.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.01 -9.59 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915816523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.395 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds