Wall clock time and date at job start Tue Mar 31 2020 14:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00408 * 2 1 4 4 N 1.46501 * 109.47211 * 124.99716 * 3 2 1 5 5 C 1.46500 * 120.00219 * 274.99925 * 4 3 2 6 6 C 1.50698 * 109.47429 * 275.00296 * 5 4 3 7 7 H 1.07995 * 119.99644 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99879 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99668 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00119 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46730 * 90.00326 * 10 8 6 12 12 H 1.48496 * 109.46843 * 209.99922 * 10 8 6 13 13 H 1.48496 * 109.47015 * 330.00532 * 10 8 6 14 14 S 1.65608 * 119.99650 * 95.00329 * 4 3 2 15 15 O 1.42102 * 104.27363 * 206.06992 * 14 4 3 16 16 O 1.42097 * 104.27711 * 333.92606 * 14 4 3 17 17 C 1.81401 * 104.44945 * 89.99952 * 14 4 3 18 18 C 1.52998 * 109.46866 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.46802 * 179.97438 * 18 17 14 20 20 C 1.38265 * 119.99028 * 269.72986 * 19 18 17 21 21 C 1.38225 * 120.05090 * 179.73017 * 20 19 18 22 22 C 1.38219 * 120.02765 * 0.54067 * 21 20 19 23 23 C 1.38441 * 119.97322 * 359.73190 * 22 21 20 24 24 F 1.35100 * 120.02540 * 180.02562 * 23 22 21 25 25 C 1.38177 * 119.98667 * 90.00336 * 19 18 17 26 26 H 1.08000 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.00070 * 180.02562 * 1 2 3 28 28 H 1.08009 * 119.99979 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47059 * 5.00252 * 3 2 1 30 30 H 1.09000 * 109.47515 * 244.99904 * 3 2 1 31 31 H 1.08994 * 109.46638 * 35.00405 * 5 4 3 32 32 H 1.09005 * 109.46874 * 155.00013 * 5 4 3 33 33 H 0.97003 * 119.99404 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47000 * 300.00248 * 17 14 4 35 35 H 1.09006 * 109.46904 * 59.99979 * 17 14 4 36 36 H 1.08993 * 109.47317 * 300.00064 * 18 17 14 37 37 H 1.08998 * 109.47275 * 60.00757 * 18 17 14 38 38 H 1.08001 * 119.97489 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.98516 * 180.27495 * 21 20 19 40 40 H 1.07995 * 120.01329 * 179.75030 * 22 21 20 41 41 H 1.08005 * 120.01445 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5992 3.2645 2.5450 7 1 2.9555 3.8412 1.7042 8 6 2.2100 3.9028 3.7035 9 7 2.2712 5.2140 3.7841 10 14 1.5944 2.9052 5.1579 11 1 2.7395 2.5486 6.0337 12 1 0.6127 3.7091 5.9294 13 1 0.9419 1.6650 4.6668 14 16 4.5714 0.8757 0.9173 15 8 4.9848 0.4305 2.2019 16 8 4.5315 -0.0151 -0.1891 17 6 5.4292 2.4099 0.4687 18 6 6.9136 2.1166 0.2425 19 6 7.6261 3.3911 -0.1307 20 6 7.7387 3.7562 -1.4595 21 6 8.3870 4.9277 -1.8029 22 6 8.9335 5.7298 -0.8188 23 6 8.8264 5.3624 0.5116 24 9 9.3596 6.1459 1.4744 25 6 8.1717 4.1913 0.8548 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9314 31 1 1.4984 1.4371 2.5982 32 1 3.1614 1.3203 3.2221 33 1 1.9970 5.6631 4.5991 34 1 4.9950 2.8150 -0.4453 35 1 5.3212 3.1355 1.2750 36 1 7.3475 1.7118 1.1568 37 1 7.0220 1.3909 -0.5635 38 1 7.3162 3.1277 -2.2295 39 1 8.4705 5.2141 -2.8409 40 1 9.4435 6.6430 -1.0877 41 1 8.0872 3.9039 1.8925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915816523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:13 Heat of formation + Delta-G solvation = -93.272951 kcal Electronic energy + Delta-G solvation = -25628.859150 eV Core-core repulsion = 21743.130701 eV Total energy + Delta-G solvation = -3885.728449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.93898 -40.19599 -38.20725 -37.97669 -36.96057 -35.34739 -34.94883 -33.65305 -31.60919 -30.66609 -29.89500 -26.51386 -25.65793 -23.77025 -23.66801 -22.24988 -20.98615 -19.73426 -18.99367 -18.66486 -18.10012 -17.64223 -17.40185 -17.31109 -17.09613 -16.62635 -16.37131 -15.94415 -15.47814 -15.19457 -14.94134 -14.61556 -14.52637 -14.29077 -14.13840 -14.08936 -13.81356 -13.49538 -13.30244 -13.13185 -12.99819 -12.92483 -12.79615 -12.50267 -12.40259 -12.34145 -12.18408 -12.02902 -11.90259 -11.66654 -11.50114 -10.78157 -10.30407 -9.99130 -9.76506 -9.62416 -8.30313 -6.34573 -0.67697 0.15101 0.21613 1.31207 1.37332 1.40002 1.47351 1.88495 2.34093 2.54755 2.87654 3.05439 3.21403 3.23124 3.59900 3.70065 3.73563 3.94157 3.96227 4.10112 4.17365 4.24832 4.34720 4.42370 4.45098 4.56542 4.72647 4.89910 4.90858 4.92675 4.98378 5.09006 5.11779 5.14321 5.32570 5.34026 5.46829 5.48633 5.67224 5.78371 5.92133 5.97556 6.28926 6.70862 7.30935 8.84370 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004414 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.045595 B = 6341.231032 C = 8002.884275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.185 4.185 3 C 0.148 3.852 4 N -0.984 5.984 5 C 0.222 3.778 6 C -0.539 4.539 7 H 0.059 0.941 8 C 0.024 3.976 9 N -0.937 5.937 10 Si 0.920 3.080 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.244 1.244 14 S 2.614 3.386 15 O -0.994 6.994 16 O -0.973 6.973 17 C -0.609 4.609 18 C -0.078 4.078 19 C -0.053 4.053 20 C -0.126 4.126 21 C -0.083 4.083 22 C -0.159 4.159 23 C 0.074 3.926 24 F -0.153 7.153 25 C -0.170 4.170 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.154 0.846 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -4.435 -13.385 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 C 0.023 3.977 4 N -0.819 5.819 5 C 0.097 3.903 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.176 4.176 9 N -0.576 5.576 10 Si 0.744 3.256 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.167 1.167 14 S 2.711 3.289 15 O -0.984 6.984 16 O -0.963 6.963 17 C -0.740 4.740 18 C -0.117 4.117 19 C -0.054 4.054 20 C -0.144 4.144 21 C -0.101 4.101 22 C -0.177 4.177 23 C 0.055 3.945 24 F -0.132 7.132 25 C -0.189 4.189 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.177 0.823 39 H 0.187 0.813 40 H 0.172 0.828 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.328 -5.153 -13.112 16.366 hybrid contribution -0.265 1.047 1.490 1.841 sum 8.063 -4.106 -11.622 14.728 Atomic orbital electron populations 1.24044 0.95316 1.02901 0.98722 1.23407 0.96934 0.98732 1.01414 1.20451 0.93265 0.96136 0.87834 1.57124 1.25596 1.82799 1.16384 1.19300 0.96811 0.93661 0.80541 1.21709 1.43990 0.91522 1.00623 0.92258 1.25601 0.95319 0.95529 1.01115 1.70012 1.49304 1.09404 1.28921 0.86118 0.79172 0.80132 0.80215 1.19750 1.20593 1.16706 1.04648 0.73752 0.77169 0.73333 1.93508 1.82362 1.80747 1.41823 1.93527 1.86144 1.61698 1.54964 1.30566 1.07349 1.22394 1.13693 1.20486 0.89897 0.96494 1.04823 1.19530 0.96581 0.95611 0.93700 1.21546 0.99434 0.98034 0.95367 1.21427 0.94973 0.92949 1.00705 1.21484 1.03181 1.02728 0.90337 1.18013 0.99046 0.90846 0.86609 1.91465 1.84419 1.73771 1.63527 1.21245 1.01182 0.95177 1.01274 0.87847 0.86786 0.87719 0.89758 0.88220 0.93896 0.94495 0.92431 0.82874 0.85467 0.89303 0.86547 0.82302 0.81251 0.82794 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 14.32 67.78 0.97 -3.31 16 2 C -0.18 -5.40 9.84 25.64 0.25 -5.15 16 3 C 0.15 4.64 5.69 85.63 0.49 5.12 16 4 N -0.98 -36.86 2.68 -523.93 -1.41 -38.27 16 5 C 0.22 9.97 4.48 85.63 0.38 10.35 16 6 C -0.54 -28.04 9.94 25.60 0.25 -27.78 16 7 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 8 C 0.02 1.31 5.47 84.65 0.46 1.77 16 9 N -0.94 -55.27 13.96 21.45 0.30 -54.97 16 10 Si 0.92 42.26 27.47 68.60 1.88 44.15 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 14 S 2.61 90.50 5.37 -56.49 -0.30 90.20 16 15 O -0.99 -41.78 16.53 -127.65 -2.11 -43.89 16 16 O -0.97 -33.37 16.99 -127.65 -2.17 -35.54 16 17 C -0.61 -17.46 6.16 71.98 0.44 -17.02 16 18 C -0.08 -1.88 5.35 29.85 0.16 -1.72 16 19 C -0.05 -1.26 5.13 -19.87 -0.10 -1.36 16 20 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 21 C -0.08 -1.35 10.04 22.26 0.22 -1.13 16 22 C -0.16 -3.20 10.03 22.31 0.22 -2.97 16 23 C 0.07 1.97 7.30 22.38 0.16 2.13 16 24 F -0.15 -4.49 17.27 44.97 0.78 -3.71 16 25 C -0.17 -4.67 9.68 22.31 0.22 -4.45 16 26 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 27 H 0.11 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.08 2.69 7.76 -2.39 -0.02 2.67 16 30 H 0.10 2.59 7.61 -2.39 -0.02 2.57 16 31 H 0.04 1.89 7.17 -2.39 -0.02 1.88 16 32 H 0.04 1.75 6.24 -2.38 -0.01 1.73 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.13 4.33 8.14 -2.39 -0.02 4.31 16 36 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 37 H 0.12 2.12 8.08 -2.39 -0.02 2.10 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -69.83 367.94 2.29 -67.54 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.96 Total: 22.12 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 4.36 Total: -47.63 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -1.11 Total: -93.24 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -4.28 Total: -79.42 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.71 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Atomic # 16 Polarization: 90.50 SS G_CDS: -0.30 Total: 90.20 kcal Total: -69.83 2.29 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915816523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.729 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds