Wall clock time and date at job start Tue Mar 31 2020 15:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46997 * 2 1 4 4 C 1.46504 * 119.99312 * 269.99605 * 3 2 1 5 5 C 1.50704 * 109.47000 * 269.99691 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47041 * 120.00271 * 9 7 5 12 12 H 1.48500 * 109.47387 * 240.00432 * 9 7 5 13 13 C 1.34775 * 120.00608 * 89.99095 * 3 2 1 14 14 O 1.21279 * 120.00107 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99775 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.46862 * 179.97438 * 15 13 3 17 17 C 1.34727 * 116.99557 * 180.02562 * 16 15 13 18 18 O 1.21489 * 120.00620 * 0.27071 * 17 16 15 19 19 C 1.47576 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.39715 * 120.15938 * 359.72197 * 19 17 16 21 21 C 1.38045 * 119.84425 * 179.74309 * 20 19 17 22 22 F 1.35096 * 119.91512 * 180.23444 * 21 20 19 23 23 C 1.38671 * 120.17326 * 0.53372 * 21 20 19 24 24 C 1.38188 * 120.32456 * 359.71771 * 23 21 20 25 25 C 1.38308 * 120.15363 * 0.02619 * 24 23 21 26 26 F 1.35096 * 120.09063 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.47489 * 300.01063 * 1 2 3 28 28 H 1.09002 * 109.46840 * 60.00877 * 1 2 3 29 29 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47593 * 239.99470 * 2 1 3 31 31 H 1.09002 * 109.46840 * 119.99123 * 2 1 3 32 32 H 1.08994 * 109.47701 * 30.00025 * 4 3 2 33 33 H 1.09004 * 109.46755 * 150.00457 * 4 3 2 34 34 H 0.96998 * 120.00551 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46881 * 59.99530 * 15 13 3 36 36 H 1.08998 * 109.46923 * 299.99608 * 15 13 3 37 37 H 1.07995 * 120.07290 * 0.02562 * 20 19 17 38 38 H 1.08002 * 119.84010 * 179.69959 * 23 21 20 39 39 H 1.08006 * 119.92447 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2689 5 6 3.6859 1.8349 -1.7038 6 1 4.3428 1.2302 -1.0960 7 6 4.1495 2.3902 -2.8775 8 7 3.3499 3.1269 -3.6172 9 14 5.9140 2.0973 -3.4162 10 1 6.6013 1.2413 -2.4161 11 1 5.9221 1.4186 -4.7371 12 1 6.6213 3.3986 -3.5240 13 6 2.2428 2.0168 1.1671 14 8 2.6475 3.1600 1.1670 15 6 1.9921 1.3063 2.4723 16 8 2.3069 2.1959 3.5758 17 6 2.1361 1.7101 4.8208 18 8 1.7398 0.5728 4.9801 19 6 2.4356 2.5578 5.9911 20 6 2.9019 3.8626 5.8118 21 6 3.1749 4.6517 6.9111 22 9 3.6214 5.9151 6.7393 23 6 2.9981 4.1488 8.1912 24 6 2.5422 2.8575 8.3768 25 6 2.2594 2.0570 7.2850 26 9 1.8143 0.7946 7.4679 27 1 -0.3634 0.5140 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8935 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6761 3.5179 -4.4428 35 1 2.6226 0.4190 2.5299 36 1 0.9442 1.0118 2.5301 37 1 3.0440 4.2544 4.8155 38 1 3.2180 4.7692 9.0475 39 1 2.4072 2.4723 9.3767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918905876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:18 Heat of formation + Delta-G solvation = -176.529108 kcal Electronic energy + Delta-G solvation = -27093.822246 eV Core-core repulsion = 22638.270363 eV Total energy + Delta-G solvation = -4455.551883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.31754 -49.29113 -40.74867 -39.24163 -38.65712 -36.46698 -35.35002 -32.88055 -32.33056 -30.51758 -30.21043 -29.19356 -26.69332 -25.01535 -23.41384 -23.09998 -22.57582 -21.36878 -18.97508 -18.53643 -17.99982 -17.65691 -17.01739 -16.87723 -16.51563 -16.41284 -16.11354 -15.85150 -15.69341 -15.29881 -14.82056 -14.59052 -14.54404 -14.24718 -13.76355 -13.51211 -13.39185 -13.03353 -12.96929 -12.61198 -12.37493 -12.15438 -12.09208 -11.95400 -11.66760 -11.27049 -10.97634 -10.91238 -10.77984 -10.66793 -10.56986 -10.17355 -9.88178 -9.67196 -9.09509 -9.05938 -8.47523 -7.79514 -6.08370 -4.13325 -0.03498 0.46855 2.08103 2.18458 2.98418 3.19577 3.28135 3.36109 3.40164 3.57598 3.59103 3.78177 4.00914 4.27841 4.41068 4.46441 4.62102 4.80453 5.00069 5.13581 5.14978 5.26530 5.27347 5.32325 5.33656 5.46541 5.55478 5.56925 5.70166 5.96353 6.12794 6.16585 6.19042 6.42099 6.95477 7.36014 7.41669 7.49619 7.87618 8.17345 8.24963 8.80146 8.95430 9.51965 10.99847 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002903 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.297099 B = 9643.073308 C =10862.289296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.507 3.493 18 O -0.490 6.490 19 C -0.131 4.131 20 C -0.065 4.065 21 C 0.080 3.920 22 F -0.127 7.127 23 C -0.090 4.090 24 C -0.140 4.140 25 C 0.155 3.845 26 F -0.109 7.109 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -2.541 22.976 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.236 6.236 17 C 0.351 3.649 18 O -0.379 6.379 19 C -0.133 4.133 20 C -0.083 4.083 21 C 0.060 3.940 22 F -0.106 7.106 23 C -0.109 4.109 24 C -0.158 4.158 25 C 0.135 3.865 26 F -0.087 7.087 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.186 0.814 38 H 0.171 0.829 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.331 -2.167 22.773 23.283 hybrid contribution 0.894 -0.372 -0.482 1.081 sum -3.437 -2.539 22.291 22.697 Atomic orbital electron populations 1.22235 0.96478 1.01748 1.02430 1.21525 0.93793 0.83898 1.03098 1.48212 1.63707 1.13423 1.07095 1.19347 0.96525 0.93716 0.77499 1.21463 0.96834 1.32063 1.06381 0.92317 1.24930 0.97935 0.94841 0.96345 1.69932 1.35652 1.33312 1.14367 0.86432 0.84516 0.78097 0.78313 1.19782 1.20947 1.20822 1.19658 0.79800 0.87148 0.84230 1.90717 1.44547 1.17480 1.86717 1.23054 1.02989 0.92592 0.84008 1.86578 1.78521 1.44758 1.13782 1.20689 0.75266 0.85473 0.83484 1.90908 1.41807 1.18489 1.86701 1.18962 1.08837 0.95166 0.90345 1.21561 0.94351 0.91566 1.00865 1.17505 1.01852 0.80975 0.93663 1.91574 1.86665 1.36132 1.96200 1.21286 0.97439 0.95607 0.96549 1.20962 1.02405 0.93603 0.98867 1.17667 0.96238 0.80564 0.92060 1.91629 1.85571 1.35775 1.95742 0.93131 0.91755 0.91848 0.89345 0.91717 0.94583 0.93671 0.92698 0.88351 0.88435 0.81417 0.82884 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.56 5.93 -4.04 -0.02 1.53 16 3 N -0.59 -12.16 2.46 -175.05 -0.43 -12.59 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.49 7.75 -10.98 -0.09 10.40 16 14 O -0.52 -13.02 16.08 -14.10 -0.23 -13.24 16 15 C 0.05 0.81 4.51 36.01 0.16 0.97 16 16 O -0.32 -5.21 9.01 -47.24 -0.43 -5.64 16 17 C 0.51 7.38 7.89 34.54 0.27 7.65 16 18 O -0.49 -7.87 15.13 -19.26 -0.29 -8.16 16 19 C -0.13 -1.53 5.88 -104.93 -0.62 -2.15 16 20 C -0.06 -0.68 9.59 -39.10 -0.38 -1.06 16 21 C 0.08 0.71 7.29 -39.49 -0.29 0.42 16 22 F -0.13 -1.27 17.26 2.25 0.04 -1.23 16 23 C -0.09 -0.57 10.01 -39.44 -0.39 -0.96 16 24 C -0.14 -0.92 10.01 -39.57 -0.40 -1.32 16 25 C 0.15 1.56 7.28 -38.95 -0.28 1.28 16 26 F -0.11 -1.29 15.55 2.25 0.04 -1.26 16 27 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.10 1.41 7.40 -51.93 -0.38 1.02 16 36 H 0.10 1.34 7.18 -51.93 -0.37 0.97 16 37 H 0.17 1.90 7.61 -52.49 -0.40 1.50 16 38 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.16 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -34.13 353.95 -6.67 -40.80 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.33 Total: -2.98 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -2.10 Total: 7.79 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.31 Total: -38.07 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.94 Total: -27.04 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.07 Total: -2.49 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.13 -6.67 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918905876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.730 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds