Wall clock time and date at job start Tue Mar 31 2020 15:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46997 * 2 1 4 4 C 1.46504 * 119.99312 * 269.99605 * 3 2 1 5 5 C 1.50704 * 109.47000 * 269.99691 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47041 * 120.00271 * 9 7 5 12 12 H 1.48500 * 109.47387 * 240.00432 * 9 7 5 13 13 C 1.34775 * 120.00608 * 89.99095 * 3 2 1 14 14 O 1.21279 * 120.00107 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99775 * 0.02562 * 13 3 2 16 16 O 1.45198 * 109.46862 * 179.97438 * 15 13 3 17 17 C 1.34727 * 116.99557 * 180.02562 * 16 15 13 18 18 O 1.21489 * 120.00620 * 0.27071 * 17 16 15 19 19 C 1.47576 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.39715 * 120.15938 * 359.72197 * 19 17 16 21 21 C 1.38045 * 119.84425 * 179.74309 * 20 19 17 22 22 F 1.35096 * 119.91512 * 180.23444 * 21 20 19 23 23 C 1.38671 * 120.17326 * 0.53372 * 21 20 19 24 24 C 1.38188 * 120.32456 * 359.71771 * 23 21 20 25 25 C 1.38308 * 120.15363 * 0.02619 * 24 23 21 26 26 F 1.35096 * 120.09063 * 179.97438 * 25 24 23 27 27 H 1.08994 * 109.47489 * 300.01063 * 1 2 3 28 28 H 1.09002 * 109.46840 * 60.00877 * 1 2 3 29 29 H 1.09003 * 109.46838 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47593 * 239.99470 * 2 1 3 31 31 H 1.09002 * 109.46840 * 119.99123 * 2 1 3 32 32 H 1.08994 * 109.47701 * 30.00025 * 4 3 2 33 33 H 1.09004 * 109.46755 * 150.00457 * 4 3 2 34 34 H 0.96998 * 120.00551 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46881 * 59.99530 * 15 13 3 36 36 H 1.08998 * 109.46923 * 299.99608 * 15 13 3 37 37 H 1.07995 * 120.07290 * 0.02562 * 20 19 17 38 38 H 1.08002 * 119.84010 * 179.69959 * 23 21 20 39 39 H 1.08006 * 119.92447 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2689 5 6 3.6859 1.8349 -1.7038 6 1 4.3428 1.2302 -1.0960 7 6 4.1495 2.3902 -2.8775 8 7 3.3499 3.1269 -3.6172 9 14 5.9140 2.0973 -3.4162 10 1 6.6013 1.2413 -2.4161 11 1 5.9221 1.4186 -4.7371 12 1 6.6213 3.3986 -3.5240 13 6 2.2428 2.0168 1.1671 14 8 2.6475 3.1600 1.1670 15 6 1.9921 1.3063 2.4723 16 8 2.3069 2.1959 3.5758 17 6 2.1361 1.7101 4.8208 18 8 1.7398 0.5728 4.9801 19 6 2.4356 2.5578 5.9911 20 6 2.9019 3.8626 5.8118 21 6 3.1749 4.6517 6.9111 22 9 3.6214 5.9151 6.7393 23 6 2.9981 4.1488 8.1912 24 6 2.5422 2.8575 8.3768 25 6 2.2594 2.0570 7.2850 26 9 1.8143 0.7946 7.4679 27 1 -0.3634 0.5140 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8935 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6761 3.5179 -4.4428 35 1 2.6226 0.4190 2.5299 36 1 0.9442 1.0118 2.5301 37 1 3.0440 4.2544 4.8155 38 1 3.2180 4.7692 9.0475 39 1 2.4072 2.4723 9.3767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918905876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:17 Heat of formation + Delta-G solvation = -196.243911 kcal Electronic energy + Delta-G solvation = -27094.677144 eV Core-core repulsion = 22638.270363 eV Total energy + Delta-G solvation = -4456.406781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.13221 -50.03229 -41.91870 -40.68369 -39.58953 -37.71363 -37.00686 -34.95455 -33.10314 -31.75388 -31.23976 -30.63351 -28.48196 -25.98731 -24.87137 -24.26496 -23.88509 -22.38296 -20.38030 -19.66514 -18.86736 -18.67129 -18.51556 -18.01627 -17.99295 -17.72850 -17.25354 -16.99573 -16.75739 -16.48996 -16.21663 -15.93520 -15.48545 -15.32979 -14.86326 -14.76033 -14.57111 -14.34784 -14.00538 -13.87716 -13.73059 -13.62695 -13.30494 -13.09994 -13.06117 -12.73093 -12.70009 -12.52915 -12.26174 -12.10674 -11.86605 -11.82302 -11.70846 -10.77557 -10.66216 -10.56361 -9.82637 -9.56992 -8.24542 -6.38977 -0.81249 -0.21915 1.03069 1.13566 1.36241 1.38640 1.49988 1.58171 2.21436 2.24836 2.40494 2.84262 2.91196 3.05741 3.27437 3.38164 3.49094 3.74099 3.83243 3.91785 3.93747 4.12873 4.35827 4.36348 4.57362 4.60870 4.74302 4.80408 4.84348 4.89252 4.93078 5.00728 5.03533 5.18781 5.34845 5.51369 5.52558 5.77682 6.02660 6.32593 6.58474 6.70319 7.18167 7.34598 8.83165 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002903 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.297099 B = 9643.073308 C =10862.289296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.062 3.938 16 O -0.340 6.340 17 C 0.508 3.492 18 O -0.510 6.510 19 C -0.153 4.153 20 C -0.076 4.076 21 C 0.073 3.927 22 F -0.135 7.135 23 C -0.063 4.063 24 C -0.117 4.117 25 C 0.145 3.855 26 F -0.122 7.122 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.195 0.805 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -3.824 25.819 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.255 6.255 17 C 0.354 3.646 18 O -0.399 6.399 19 C -0.155 4.155 20 C -0.095 4.095 21 C 0.054 3.946 22 F -0.113 7.113 23 C -0.081 4.081 24 C -0.136 4.136 25 C 0.125 3.875 26 F -0.100 7.100 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.212 0.788 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.913 -3.499 25.628 26.160 hybrid contribution 0.724 0.069 -1.290 1.481 sum -3.189 -3.429 24.339 24.785 Atomic orbital electron populations 1.22179 0.94290 1.03819 1.01859 1.21881 0.95586 0.80948 1.04463 1.48202 1.63514 1.15262 1.05643 1.18803 0.95612 0.91686 0.79687 1.21734 0.97812 1.32161 1.06643 0.92735 1.25837 1.02371 0.94413 0.96393 1.70045 1.37702 1.34060 1.14854 0.85367 0.79006 0.78013 0.78409 1.19160 1.19378 1.20767 1.20463 0.78437 0.86653 0.85740 1.90680 1.47088 1.20082 1.87715 1.22911 1.05002 0.91967 0.81550 1.86585 1.78977 1.45356 1.14619 1.21158 0.74512 0.85653 0.83300 1.90880 1.43038 1.19268 1.86751 1.18885 1.11248 0.95365 0.90021 1.21390 0.95520 0.91735 1.00899 1.17673 1.02084 0.80527 0.94361 1.91559 1.86829 1.36625 1.96336 1.21718 0.94520 0.95547 0.96326 1.21384 0.99967 0.92827 0.99372 1.17976 0.96701 0.80517 0.92286 1.91597 1.85869 1.36768 1.95747 0.92436 0.93635 0.88368 0.89906 0.88406 0.95180 0.98169 0.92335 0.86192 0.85732 0.83389 0.78778 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.26 16 2 C 0.09 2.79 5.93 86.38 0.51 3.30 16 3 N -0.59 -25.08 2.46 -826.13 -2.03 -27.11 16 4 C 0.26 14.09 5.16 85.63 0.44 14.53 16 5 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.50 21.36 7.75 87.66 0.68 22.04 16 14 O -0.58 -30.66 16.08 15.77 0.25 -30.41 16 15 C 0.06 1.96 4.51 71.24 0.32 2.28 16 16 O -0.34 -11.32 9.01 -49.98 -0.45 -11.77 16 17 C 0.51 14.90 7.89 70.29 0.55 15.46 16 18 O -0.51 -16.09 15.13 19.87 0.30 -15.79 16 19 C -0.15 -3.56 5.88 -20.06 -0.12 -3.68 16 20 C -0.08 -1.64 9.59 22.58 0.22 -1.43 16 21 C 0.07 1.19 7.29 22.33 0.16 1.35 16 22 F -0.13 -2.55 17.26 44.97 0.78 -1.77 16 23 C -0.06 -0.54 10.01 22.36 0.22 -0.32 16 24 C -0.12 -1.08 10.01 22.27 0.22 -0.86 16 25 C 0.15 2.67 7.28 22.68 0.17 2.83 16 26 F -0.12 -2.71 15.55 44.97 0.70 -2.01 16 27 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 32 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.12 3.26 7.40 -2.38 -0.02 3.24 16 36 H 0.12 3.24 7.18 -2.39 -0.02 3.22 16 37 H 0.15 3.70 7.61 -2.91 -0.02 3.68 16 38 H 0.20 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -79.12 353.95 7.78 -71.34 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.10 Total: 4.01 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 4.82 Total: 22.15 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.74 Total: -82.69 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: 0.10 Total: -57.96 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.48 Total: -3.78 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -79.12 7.78 -71.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918905876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.906 kcal (2) G-P(sol) polarization free energy of solvation -79.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds