Wall clock time and date at job start Tue Mar 31 2020 14:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 19 19 C 1.38176 * 120.01348 * 264.72341 * 18 3 2 20 20 C 1.38432 * 120.02761 * 179.76485 * 19 18 3 21 21 F 1.35104 * 119.96866 * 180.27264 * 20 19 18 22 22 C 1.38480 * 120.06075 * 0.50997 * 20 19 18 23 23 C 1.38125 * 120.02911 * 359.74309 * 22 20 19 24 24 C 1.38689 * 120.01548 * 84.99565 * 18 3 2 25 25 O 1.35940 * 120.02951 * 359.96034 * 24 18 3 26 26 C 1.42904 * 117.00001 * 180.02562 * 25 24 18 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 31 31 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 34 34 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 35 35 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 36 36 H 1.07997 * 119.98412 * 0.02562 * 19 18 3 37 37 H 1.08004 * 119.98396 * 179.71764 * 22 20 19 38 38 H 1.07999 * 120.01166 * 179.97438 * 23 22 20 39 39 H 1.09005 * 109.46679 * 299.99458 * 26 25 24 40 40 H 1.08999 * 109.47268 * 59.99111 * 26 25 24 41 41 H 1.08996 * 109.47060 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3373 2.6371 0.4323 8 6 0.0409 3.3485 2.6505 9 16 -1.6355 4.0117 2.4905 10 6 -1.8350 4.7278 4.0880 11 1 -1.0350 4.6667 4.8110 12 6 -3.0199 5.3715 4.4170 13 7 -3.9948 5.4465 3.5357 14 14 -3.2317 6.1301 6.1108 15 1 -2.1896 7.1667 6.3226 16 1 -4.5765 6.7521 6.2101 17 1 -3.0974 5.0744 7.1464 18 6 3.5420 1.4443 -0.1238 19 6 4.3289 1.5204 1.0094 20 6 5.7086 1.5172 0.8963 21 9 6.4768 1.5862 2.0055 22 6 6.3020 1.4483 -0.3530 23 6 5.5177 1.3773 -1.4878 24 6 4.1350 1.3751 -1.3757 25 8 3.3620 1.3049 -2.4917 26 6 4.0404 1.2355 -3.7475 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2720 2.1232 1.9978 33 1 0.0694 2.6265 3.4667 34 1 0.7354 4.1619 2.8608 35 1 -4.8230 5.8959 3.7657 36 1 3.8673 1.5783 1.9841 37 1 7.3785 1.4504 -0.4401 38 1 5.9808 1.3240 -2.4620 39 1 4.6595 2.1235 -3.8755 40 1 4.6708 0.3466 -3.7713 41 1 3.3085 1.1842 -4.5535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928784690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:12 Heat of formation + Delta-G solvation = -95.523751 kcal Electronic energy + Delta-G solvation = -25160.433929 eV Core-core repulsion = 21274.607878 eV Total energy + Delta-G solvation = -3885.826051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.08773 -40.85529 -39.35608 -37.64668 -35.64507 -32.41753 -32.37389 -31.50625 -30.12883 -29.04055 -27.59571 -26.11515 -25.42009 -22.86565 -22.54119 -21.15620 -20.15063 -18.61846 -17.88277 -17.38471 -17.29541 -16.22301 -16.11486 -15.84198 -15.67747 -15.33220 -15.07136 -14.88121 -14.78536 -14.14093 -13.86599 -13.58737 -13.47390 -13.22551 -13.21183 -12.91354 -12.54012 -12.35866 -12.14489 -11.77731 -11.75770 -11.38797 -11.25770 -11.02765 -11.02270 -10.92369 -10.75551 -10.67636 -9.80162 -9.47145 -9.30643 -9.04158 -8.85015 -8.38403 -8.21759 -6.47341 -6.19700 -3.89869 0.72676 0.84276 2.86682 3.01691 3.11747 3.17428 3.25116 3.29073 3.32823 3.71880 3.90963 4.19039 4.22561 4.32055 4.60139 4.68199 4.78330 4.86306 5.02552 5.12545 5.13472 5.15546 5.15880 5.26257 5.34880 5.57235 5.59564 5.67330 5.72795 5.77702 5.90065 5.93732 6.03969 6.13760 6.16859 6.30907 6.33269 6.66410 6.71888 6.94096 7.61300 7.71241 8.37013 8.64713 9.25621 10.87642 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.002809 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.328956 B = 9967.113804 C =10978.325284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.195 3.805 4 H 0.107 0.893 5 N -0.736 5.736 6 C 0.534 3.466 7 O -0.508 6.508 8 C -0.155 4.155 9 S -0.057 6.057 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.088 4.088 19 C -0.112 4.112 20 C 0.067 3.933 21 F -0.139 7.139 22 C -0.116 4.116 23 C -0.177 4.177 24 C 0.129 3.871 25 O -0.305 6.305 26 C 0.025 3.975 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.879 -11.395 -11.317 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.090 3.910 4 H 0.125 0.875 5 N -0.392 5.392 6 C 0.320 3.680 7 O -0.382 6.382 8 C -0.306 4.306 9 S 0.170 5.830 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.089 4.089 19 C -0.131 4.131 20 C 0.047 3.953 21 F -0.118 7.118 22 C -0.135 4.135 23 C -0.196 4.196 24 C 0.083 3.917 25 O -0.218 6.218 26 C -0.070 4.070 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.189 -11.378 -12.905 26.525 hybrid contribution 1.623 0.571 2.626 3.139 sum 21.811 -10.807 -10.279 26.423 Atomic orbital electron populations 1.21817 0.93999 1.00622 1.03890 1.21890 0.97536 0.94754 1.01923 1.19652 0.87898 0.94497 0.88945 0.87543 1.46222 1.17604 1.59470 1.15933 1.20228 0.80731 0.77407 0.89611 1.90713 1.50261 1.57220 1.39960 1.23553 1.07073 1.02809 0.97128 1.85364 1.06568 1.70511 1.20572 1.22840 1.04063 1.41901 0.99668 0.91008 1.24983 0.94842 0.95572 0.98139 1.70005 1.05106 1.40923 1.34287 0.86237 0.77505 0.79271 0.82565 1.19947 1.20825 1.19949 1.19190 0.96085 1.03716 0.89919 1.20743 0.91566 1.01445 0.99353 1.17475 0.88579 1.06386 0.82845 1.91509 1.75088 1.94087 1.51130 1.20918 1.00894 1.01118 0.90559 1.21062 0.92057 1.06904 0.99586 1.18718 0.89418 0.96880 0.86665 1.86171 1.34602 1.87932 1.13085 1.23132 0.99121 1.01254 0.83484 0.93635 0.91759 0.91888 0.91253 0.92068 0.76952 0.89278 0.89292 0.92148 0.84037 0.84406 0.84256 0.92485 0.92519 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.52 37.16 0.32 -1.80 16 2 C -0.12 -1.48 5.59 -26.73 -0.15 -1.63 16 3 C 0.20 2.50 2.19 -69.08 -0.15 2.34 16 4 H 0.11 1.61 7.12 -51.93 -0.37 1.24 16 5 N -0.74 -10.12 4.94 -54.93 -0.27 -10.39 16 6 C 0.53 9.80 6.43 -10.98 -0.07 9.73 16 7 O -0.51 -11.01 13.01 5.55 0.07 -10.94 16 8 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 14 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.09 -0.95 5.07 -104.48 -0.53 -1.48 16 19 C -0.11 -1.12 9.21 -39.53 -0.36 -1.48 16 20 C 0.07 0.65 7.30 -39.42 -0.29 0.36 16 21 F -0.14 -1.48 17.27 2.25 0.04 -1.45 16 22 C -0.12 -0.94 10.02 -39.53 -0.40 -1.34 16 23 C -0.18 -1.38 9.04 -39.44 -0.36 -1.74 16 24 C 0.13 1.28 6.66 -39.23 -0.26 1.02 16 25 O -0.31 -2.96 9.63 -19.55 -0.19 -3.15 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.10 5.66 -51.93 -0.29 0.80 16 29 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.39 4.39 6.20 -40.82 -0.25 4.14 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.14 1.24 6.06 -52.49 -0.32 0.92 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.14 0.71 6.30 -52.49 -0.33 0.38 16 39 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 40 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -34.19 358.04 -7.57 -41.75 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.27 Total: 2.31 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.84 Total: -10.78 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.46 Total: -35.88 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.12 Total: -14.09 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.19 -7.57 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928784690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.769 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds