Wall clock time and date at job start Tue Mar 31 2020 14:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 19 19 C 1.38176 * 120.01348 * 264.72341 * 18 3 2 20 20 C 1.38432 * 120.02761 * 179.76485 * 19 18 3 21 21 F 1.35104 * 119.96866 * 180.27264 * 20 19 18 22 22 C 1.38480 * 120.06075 * 0.50997 * 20 19 18 23 23 C 1.38125 * 120.02911 * 359.74309 * 22 20 19 24 24 C 1.38689 * 120.01548 * 84.99565 * 18 3 2 25 25 O 1.35940 * 120.02951 * 359.96034 * 24 18 3 26 26 C 1.42904 * 117.00001 * 180.02562 * 25 24 18 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 31 31 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 34 34 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 35 35 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 36 36 H 1.07997 * 119.98412 * 0.02562 * 19 18 3 37 37 H 1.08004 * 119.98396 * 179.71764 * 22 20 19 38 38 H 1.07999 * 120.01166 * 179.97438 * 23 22 20 39 39 H 1.09005 * 109.46679 * 299.99458 * 26 25 24 40 40 H 1.08999 * 109.47268 * 59.99111 * 26 25 24 41 41 H 1.08996 * 109.47060 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3373 2.6371 0.4323 8 6 0.0409 3.3485 2.6505 9 16 -1.6355 4.0117 2.4905 10 6 -1.8350 4.7278 4.0880 11 1 -1.0350 4.6667 4.8110 12 6 -3.0199 5.3715 4.4170 13 7 -3.9948 5.4465 3.5357 14 14 -3.2317 6.1301 6.1108 15 1 -2.1896 7.1667 6.3226 16 1 -4.5765 6.7521 6.2101 17 1 -3.0974 5.0744 7.1464 18 6 3.5420 1.4443 -0.1238 19 6 4.3289 1.5204 1.0094 20 6 5.7086 1.5172 0.8963 21 9 6.4768 1.5862 2.0055 22 6 6.3020 1.4483 -0.3530 23 6 5.5177 1.3773 -1.4878 24 6 4.1350 1.3751 -1.3757 25 8 3.3620 1.3049 -2.4917 26 6 4.0404 1.2355 -3.7475 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2720 2.1232 1.9978 33 1 0.0694 2.6265 3.4667 34 1 0.7354 4.1619 2.8608 35 1 -4.8230 5.8959 3.7657 36 1 3.8673 1.5783 1.9841 37 1 7.3785 1.4504 -0.4401 38 1 5.9808 1.3240 -2.4620 39 1 4.6595 2.1235 -3.8755 40 1 4.6708 0.3466 -3.7713 41 1 3.3085 1.1842 -4.5535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928784690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:11 Heat of formation + Delta-G solvation = -117.574411 kcal Electronic energy + Delta-G solvation = -25161.390117 eV Core-core repulsion = 21274.607878 eV Total energy + Delta-G solvation = -3886.782239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83611 -41.68555 -40.56886 -38.42052 -36.75471 -34.57816 -33.66469 -32.34121 -30.80624 -30.53415 -28.13019 -27.68989 -27.03693 -23.62751 -23.39947 -22.25450 -21.37388 -19.95310 -19.13774 -18.33940 -18.21124 -17.41462 -16.99679 -16.89402 -16.86617 -16.68108 -16.36337 -15.90822 -15.69557 -15.55631 -14.96950 -14.92388 -14.62397 -14.43357 -14.24403 -13.84681 -13.71895 -13.45875 -13.16591 -13.04183 -12.86227 -12.77705 -12.64953 -12.60575 -12.44848 -11.87512 -11.84768 -11.75234 -11.66182 -11.12311 -10.87579 -10.27212 -10.24929 -10.00148 -9.09989 -8.64641 -8.33921 -6.11316 0.03848 0.14213 1.27081 1.43864 1.46609 1.56581 1.64966 2.22355 2.28846 2.30706 2.47035 2.99987 3.15766 3.32626 3.47311 3.66190 3.91793 3.95558 4.10282 4.12426 4.14511 4.31282 4.37359 4.40507 4.44865 4.51172 4.55448 4.68527 4.70582 4.80057 4.91531 4.99037 5.06471 5.07789 5.12817 5.17435 5.42206 5.47150 5.54966 5.64849 6.20203 6.33229 6.47679 7.07320 7.25543 8.74971 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.002809 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.328956 B = 9967.113804 C =10978.325284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.201 3.799 4 H 0.079 0.921 5 N -0.714 5.714 6 C 0.537 3.463 7 O -0.547 6.547 8 C -0.132 4.132 9 S -0.142 6.142 10 C -0.549 4.549 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.106 4.106 19 C -0.115 4.115 20 C 0.050 3.950 21 F -0.147 7.147 22 C -0.107 4.107 23 C -0.170 4.170 24 C 0.124 3.876 25 O -0.329 6.329 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.271 0.729 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.821 -12.003 -10.787 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C 0.096 3.904 4 H 0.097 0.903 5 N -0.370 5.370 6 C 0.323 3.677 7 O -0.424 6.424 8 C -0.284 4.284 9 S 0.085 5.915 10 C -0.697 4.697 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.108 4.108 19 C -0.134 4.134 20 C 0.031 3.969 21 F -0.126 7.126 22 C -0.125 4.125 23 C -0.188 4.188 24 C 0.078 3.922 25 O -0.243 6.243 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.249 0.751 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.166 0.834 37 H 0.181 0.819 38 H 0.188 0.812 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 23.188 -12.008 -12.375 28.897 hybrid contribution 0.832 0.689 2.327 2.566 sum 24.021 -11.318 -10.048 28.391 Atomic orbital electron populations 1.21739 0.95959 1.00799 1.01406 1.21831 0.95514 0.94579 1.03312 1.19563 0.89589 0.94243 0.87009 0.90291 1.45975 1.16075 1.57856 1.17054 1.19925 0.81750 0.77561 0.88447 1.90708 1.51783 1.58953 1.40942 1.23395 1.02452 1.03627 0.98881 1.85518 1.12816 1.71593 1.21587 1.23191 1.04689 1.41993 0.99816 0.90050 1.26107 0.94309 0.95896 1.02744 1.70172 1.05773 1.41984 1.36795 0.85027 0.77746 0.78567 0.76805 1.18714 1.20344 1.18691 1.18987 0.94469 1.06259 0.91055 1.20784 0.91920 1.01349 0.99352 1.17647 0.88495 1.07442 0.83345 1.91492 1.75163 1.94268 1.51635 1.21255 1.02301 0.99177 0.89781 1.21366 0.91034 1.05469 1.00940 1.18892 0.90364 0.96572 0.86415 1.86153 1.36009 1.87855 1.14244 1.23426 0.99813 1.02743 0.81955 0.92053 0.94633 0.93957 0.89746 0.90611 0.75142 0.87387 0.87567 0.91989 0.83421 0.81863 0.81206 0.91274 0.90580 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.52 71.98 0.61 -3.58 16 2 C -0.11 -2.67 5.59 30.60 0.17 -2.50 16 3 C 0.20 5.09 2.19 44.24 0.10 5.18 16 4 H 0.08 2.48 7.12 -2.39 -0.02 2.46 16 5 N -0.71 -19.34 4.94 -446.09 -2.20 -21.54 16 6 C 0.54 20.05 6.43 87.66 0.56 20.61 16 7 O -0.55 -24.81 13.01 -3.04 -0.04 -24.85 16 8 C -0.13 -5.33 6.16 71.24 0.44 -4.90 16 9 S -0.14 -7.94 20.57 -56.49 -1.16 -9.10 16 10 C -0.55 -31.65 9.50 67.96 0.65 -31.00 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 14 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 15 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 18 C -0.11 -2.17 5.07 -19.77 -0.10 -2.27 16 19 C -0.12 -2.11 9.21 22.30 0.21 -1.90 16 20 C 0.05 0.87 7.30 22.37 0.16 1.03 16 21 F -0.15 -2.85 17.27 44.97 0.78 -2.08 16 22 C -0.11 -1.38 10.02 22.30 0.22 -1.16 16 23 C -0.17 -2.09 9.04 22.36 0.20 -1.89 16 24 C 0.12 2.21 6.66 22.49 0.15 2.36 16 25 O -0.33 -5.97 9.63 -92.88 -0.89 -6.86 16 26 C 0.01 0.13 9.81 113.37 1.11 1.24 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 1.24 5.66 -2.39 -0.01 1.23 16 29 H 0.04 1.39 7.85 -2.39 -0.02 1.38 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.41 8.58 6.20 -92.71 -0.57 8.00 16 33 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 34 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 36 H 0.15 2.34 6.06 -2.91 -0.02 2.32 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.17 0.99 6.30 -2.91 -0.02 0.97 16 39 H 0.07 0.43 7.66 -2.38 -0.02 0.41 16 40 H 0.08 0.37 7.66 -2.39 -0.02 0.35 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.11 358.04 4.23 -72.88 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.49 Total: 19.08 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.95 Total: -17.49 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.92 Total: -77.58 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.93 Total: -31.71 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -77.11 4.23 -72.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928784690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.692 kcal (2) G-P(sol) polarization free energy of solvation -77.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds