Wall clock time and date at job start Tue Mar 31 2020 14:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46792 * 2 1 4 4 H 1.09001 * 109.46939 * 54.99877 * 3 2 1 5 5 N 1.46496 * 109.47278 * 294.99868 * 3 2 1 6 6 C 1.34766 * 119.99934 * 155.84036 * 5 3 2 7 7 O 1.21280 * 120.00306 * 0.02562 * 6 5 3 8 8 C 1.50704 * 120.00055 * 179.72247 * 6 5 3 9 9 S 1.80998 * 109.47332 * 180.27650 * 8 6 5 10 10 C 1.76203 * 99.99908 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00264 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00239 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46850 * 60.00469 * 14 12 10 16 16 H 1.48500 * 109.47097 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47311 * 299.99977 * 14 12 10 18 18 C 1.50700 * 109.46821 * 174.99613 * 3 2 1 19 19 C 1.38175 * 120.01327 * 92.08570 * 18 3 2 20 20 C 1.38437 * 120.03217 * 179.97438 * 19 18 3 21 21 F 1.35090 * 119.97108 * 179.97438 * 20 19 18 22 22 C 1.38481 * 120.05630 * 0.02562 * 20 19 18 23 23 C 1.38131 * 120.03213 * 359.97438 * 22 20 19 24 24 C 1.38685 * 120.02030 * 271.81471 * 18 3 2 25 25 O 1.35948 * 120.02709 * 359.97103 * 24 18 3 26 26 C 1.42893 * 117.00057 * 180.02562 * 25 24 18 27 27 H 1.09005 * 109.47012 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47515 * 300.00397 * 1 2 3 30 30 H 1.08992 * 109.47158 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.46796 * 119.99683 * 2 1 3 32 32 H 0.97002 * 119.99422 * 335.83873 * 5 3 2 33 33 H 1.08998 * 109.47353 * 300.27967 * 8 6 5 34 34 H 1.09005 * 109.47088 * 60.27222 * 8 6 5 35 35 H 0.97001 * 119.99741 * 180.02562 * 13 12 10 36 36 H 1.08002 * 119.98505 * 359.97438 * 19 18 3 37 37 H 1.07998 * 119.98054 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.01368 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.47243 * 299.99764 * 26 25 24 40 40 H 1.08996 * 109.47470 * 60.00276 * 26 25 24 41 41 H 1.09007 * 109.47548 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 1.5420 3.4397 -1.3039 7 8 1.7640 4.1054 -0.3147 8 6 1.1494 4.1139 -2.5933 9 16 1.0954 5.9060 -2.3450 10 6 0.6244 6.4248 -3.9617 11 1 0.4647 5.6921 -4.7389 12 6 0.4597 7.7752 -4.2366 13 7 0.6548 8.6684 -3.2896 14 14 -0.0390 8.3254 -5.9508 15 1 -1.3515 7.7253 -6.3009 16 1 -0.1479 9.8060 -5.9834 17 1 0.9852 7.8822 -6.9305 18 6 3.5418 1.4444 0.1239 19 6 4.3290 1.4540 -1.0116 20 6 5.7087 1.4562 -0.8982 21 9 6.4772 1.4651 -2.0092 22 6 6.3018 1.4483 0.3531 23 6 5.5173 1.4387 1.4900 24 6 4.1346 1.4421 1.3777 25 8 3.3613 1.4389 2.4958 26 6 4.0394 1.4372 3.7536 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4753 1.5651 -2.0430 33 1 1.8812 3.8760 -3.3653 34 1 0.1661 3.7603 -2.9035 35 1 0.5393 9.6121 -3.4817 36 1 3.8677 1.4598 -1.9881 37 1 7.3783 1.4496 0.4402 38 1 5.9801 1.4329 2.4657 39 1 4.6652 0.5479 3.8278 40 1 4.6629 2.3278 3.8315 41 1 3.3072 1.4341 4.5612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928784691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:15 Heat of formation + Delta-G solvation = -101.441573 kcal Electronic energy + Delta-G solvation = -25371.990170 eV Core-core repulsion = 21485.907503 eV Total energy + Delta-G solvation = -3886.082667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.85369 -40.65610 -39.17168 -37.41444 -35.89228 -32.41310 -32.31006 -31.46489 -29.92150 -29.08035 -27.43554 -26.08161 -25.40998 -22.82884 -22.30113 -21.16643 -20.26618 -18.36022 -17.81222 -17.33989 -17.17257 -16.28234 -16.01809 -15.67637 -15.45823 -15.05053 -14.83927 -14.78315 -14.64662 -14.29550 -13.99799 -13.74740 -13.38989 -13.21170 -13.05472 -12.74858 -12.52990 -12.34803 -12.11353 -12.00513 -11.78131 -11.41646 -11.09115 -11.06761 -11.02082 -11.01766 -10.91803 -10.74521 -9.80149 -9.38986 -9.16548 -9.04136 -8.92924 -8.21108 -8.17728 -6.47021 -6.19171 -3.89506 0.98309 1.09164 3.04106 3.05098 3.12775 3.25301 3.28971 3.31956 3.40208 3.74251 4.16146 4.22895 4.40164 4.58640 4.72699 4.82005 4.90820 4.92976 4.95918 5.06212 5.14949 5.15881 5.24799 5.27994 5.43666 5.56095 5.59725 5.63706 5.72339 5.82536 5.90197 5.91952 5.95774 5.99057 6.12061 6.16234 6.20367 6.55499 6.69255 7.13788 7.61521 7.73345 8.37331 8.65749 9.26014 10.88187 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003163 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.007717 B = 8849.737688 C = 9427.547690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.195 3.805 4 H 0.106 0.894 5 N -0.734 5.734 6 C 0.533 3.467 7 O -0.510 6.510 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.092 4.092 19 C -0.100 4.100 20 C 0.062 3.938 21 F -0.141 7.141 22 C -0.117 4.117 23 C -0.181 4.181 24 C 0.130 3.870 25 O -0.307 6.307 26 C 0.026 3.974 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -21.567 10.333 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.089 3.911 4 H 0.124 0.876 5 N -0.388 5.388 6 C 0.319 3.681 7 O -0.383 6.383 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.094 4.094 19 C -0.119 4.119 20 C 0.043 3.957 21 F -0.120 7.120 22 C -0.136 4.136 23 C -0.200 4.200 24 C 0.084 3.916 25 O -0.220 6.220 26 C -0.069 4.069 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.227 -20.238 12.030 24.628 hybrid contribution -0.083 -0.546 -2.705 2.761 sum 7.144 -20.784 9.325 23.874 Atomic orbital electron populations 1.21769 0.94800 1.01605 1.02725 1.21756 0.96693 0.94456 1.03039 1.19646 0.88510 0.93897 0.89015 0.87625 1.46109 1.72476 1.07142 1.13097 1.20319 0.76097 0.81410 0.90301 1.90711 1.47450 1.63514 1.36629 1.23539 1.04134 1.05587 0.97169 1.85402 1.90363 0.90695 1.16766 1.22834 1.54135 0.94918 0.96552 0.90996 1.24981 0.94885 0.95507 0.98145 1.70011 1.46035 1.01725 1.32551 0.86236 0.79111 0.77564 0.82664 1.19941 1.20824 1.19936 1.19465 0.96860 1.03437 0.89610 1.20777 0.91339 1.00256 0.99553 1.17521 0.88757 1.06749 0.82702 1.91491 1.75118 1.94305 1.51068 1.20881 1.00738 1.01351 0.90604 1.21018 0.92176 1.07418 0.99382 1.18728 0.89384 0.96916 0.86611 1.86113 1.34704 1.88402 1.12818 1.23091 0.99020 1.01290 0.83499 0.92220 0.92569 0.92318 0.91405 0.90333 0.76793 0.89302 0.89214 0.92155 0.84212 0.84609 0.84500 0.92720 0.92453 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.80 37.16 0.36 -0.96 16 2 C -0.12 -1.10 5.45 -26.73 -0.15 -1.25 16 3 C 0.19 2.43 1.93 -69.08 -0.13 2.30 16 4 H 0.11 1.59 7.05 -51.93 -0.37 1.22 16 5 N -0.73 -9.79 3.36 -54.93 -0.18 -9.98 16 6 C 0.53 9.96 7.79 -10.99 -0.09 9.87 16 7 O -0.51 -11.71 15.54 5.56 0.09 -11.62 16 8 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.09 -1.19 5.00 -104.48 -0.52 -1.71 16 19 C -0.10 -1.31 9.29 -39.53 -0.37 -1.67 16 20 C 0.06 0.80 7.30 -39.42 -0.29 0.52 16 21 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 22 C -0.12 -1.29 10.02 -39.53 -0.40 -1.68 16 23 C -0.18 -1.90 9.04 -39.44 -0.36 -2.25 16 24 C 0.13 1.58 6.66 -39.24 -0.26 1.32 16 25 O -0.31 -3.49 9.57 -19.58 -0.19 -3.67 16 26 C 0.03 0.19 9.81 101.05 0.99 1.18 16 27 H 0.06 0.55 7.75 -51.93 -0.40 0.14 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 35 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.14 1.69 7.34 -52.49 -0.39 1.31 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 39 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 40 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 41 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -35.56 367.17 -7.55 -43.11 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.56 Total: 1.77 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.78 Total: -10.31 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.55 Total: -35.64 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.10 Total: -15.30 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.56 -7.55 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928784691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.328 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds