Wall clock time and date at job start Tue Mar 31 2020 14:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46792 * 2 1 4 4 H 1.09001 * 109.46939 * 54.99877 * 3 2 1 5 5 N 1.46496 * 109.47278 * 294.99868 * 3 2 1 6 6 C 1.34766 * 119.99934 * 155.84036 * 5 3 2 7 7 O 1.21280 * 120.00306 * 0.02562 * 6 5 3 8 8 C 1.50704 * 120.00055 * 179.72247 * 6 5 3 9 9 S 1.80998 * 109.47332 * 180.27650 * 8 6 5 10 10 C 1.76203 * 99.99908 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00264 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00239 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46850 * 60.00469 * 14 12 10 16 16 H 1.48500 * 109.47097 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47311 * 299.99977 * 14 12 10 18 18 C 1.50700 * 109.46821 * 174.99613 * 3 2 1 19 19 C 1.38175 * 120.01327 * 92.08570 * 18 3 2 20 20 C 1.38437 * 120.03217 * 179.97438 * 19 18 3 21 21 F 1.35090 * 119.97108 * 179.97438 * 20 19 18 22 22 C 1.38481 * 120.05630 * 0.02562 * 20 19 18 23 23 C 1.38131 * 120.03213 * 359.97438 * 22 20 19 24 24 C 1.38685 * 120.02030 * 271.81471 * 18 3 2 25 25 O 1.35948 * 120.02709 * 359.97103 * 24 18 3 26 26 C 1.42893 * 117.00057 * 180.02562 * 25 24 18 27 27 H 1.09005 * 109.47012 * 60.00333 * 1 2 3 28 28 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47515 * 300.00397 * 1 2 3 30 30 H 1.08992 * 109.47158 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.46796 * 119.99683 * 2 1 3 32 32 H 0.97002 * 119.99422 * 335.83873 * 5 3 2 33 33 H 1.08998 * 109.47353 * 300.27967 * 8 6 5 34 34 H 1.09005 * 109.47088 * 60.27222 * 8 6 5 35 35 H 0.97001 * 119.99741 * 180.02562 * 13 12 10 36 36 H 1.08002 * 119.98505 * 359.97438 * 19 18 3 37 37 H 1.07998 * 119.98054 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.01368 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.47243 * 299.99764 * 26 25 24 40 40 H 1.08996 * 109.47470 * 60.00276 * 26 25 24 41 41 H 1.09007 * 109.47548 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0976 -1.2518 6 6 1.5420 3.4397 -1.3039 7 8 1.7640 4.1054 -0.3147 8 6 1.1494 4.1139 -2.5933 9 16 1.0954 5.9060 -2.3450 10 6 0.6244 6.4248 -3.9617 11 1 0.4647 5.6921 -4.7389 12 6 0.4597 7.7752 -4.2366 13 7 0.6548 8.6684 -3.2896 14 14 -0.0390 8.3254 -5.9508 15 1 -1.3515 7.7253 -6.3009 16 1 -0.1479 9.8060 -5.9834 17 1 0.9852 7.8822 -6.9305 18 6 3.5418 1.4444 0.1239 19 6 4.3290 1.4540 -1.0116 20 6 5.7087 1.4562 -0.8982 21 9 6.4772 1.4651 -2.0092 22 6 6.3018 1.4483 0.3531 23 6 5.5173 1.4387 1.4900 24 6 4.1346 1.4421 1.3777 25 8 3.3613 1.4389 2.4958 26 6 4.0394 1.4372 3.7536 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4753 1.5651 -2.0430 33 1 1.8812 3.8760 -3.3653 34 1 0.1661 3.7603 -2.9035 35 1 0.5393 9.6121 -3.4817 36 1 3.8677 1.4598 -1.9881 37 1 7.3783 1.4496 0.4402 38 1 5.9801 1.4329 2.4657 39 1 4.6652 0.5479 3.8278 40 1 4.6629 2.3278 3.8315 41 1 3.3072 1.4341 4.5612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928784691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:14 Heat of formation + Delta-G solvation = -124.227237 kcal Electronic energy + Delta-G solvation = -25372.978230 eV Core-core repulsion = 21485.907503 eV Total energy + Delta-G solvation = -3887.070728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85439 -41.61569 -40.44335 -38.35988 -36.97376 -34.58250 -33.52887 -32.33164 -30.78593 -30.55738 -28.11861 -27.69656 -26.94891 -23.67832 -23.18350 -22.25547 -21.54243 -19.84731 -19.16666 -18.30603 -18.18742 -17.75872 -16.93658 -16.87369 -16.79225 -16.38956 -16.36935 -15.88232 -15.68915 -15.56566 -14.99896 -14.90734 -14.75522 -14.39433 -14.21866 -13.84008 -13.62914 -13.61186 -13.16744 -13.09542 -12.87043 -12.84666 -12.64061 -12.62388 -12.18831 -11.88946 -11.84542 -11.77994 -11.73098 -11.12641 -10.93330 -10.27792 -10.25895 -10.02386 -9.08023 -8.66009 -8.34161 -6.12186 0.08707 0.16619 1.26919 1.43873 1.46645 1.56556 1.62803 2.23906 2.28664 2.31335 2.50725 2.99855 3.24168 3.32627 3.53399 3.72286 3.90004 3.98924 4.07169 4.12409 4.17562 4.30882 4.40002 4.41478 4.42853 4.50906 4.57834 4.70434 4.74787 4.81860 4.87971 5.05950 5.08501 5.11660 5.13739 5.17325 5.41754 5.42962 5.55203 5.67663 6.19866 6.34702 6.51060 7.06961 7.26505 8.74838 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003163 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.007717 B = 8849.737688 C = 9427.547690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.198 3.802 4 H 0.077 0.923 5 N -0.707 5.707 6 C 0.537 3.463 7 O -0.559 6.559 8 C -0.130 4.130 9 S -0.150 6.150 10 C -0.548 4.548 11 H 0.083 0.917 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.111 4.111 19 C -0.112 4.112 20 C 0.038 3.962 21 F -0.150 7.150 22 C -0.114 4.114 23 C -0.177 4.177 24 C 0.121 3.879 25 O -0.326 6.326 26 C 0.015 3.985 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -23.677 9.654 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.096 0.904 5 N -0.361 5.361 6 C 0.323 3.677 7 O -0.436 6.436 8 C -0.281 4.281 9 S 0.077 5.923 10 C -0.696 4.696 11 H 0.101 0.899 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.113 4.113 19 C -0.131 4.131 20 C 0.019 3.981 21 F -0.129 7.129 22 C -0.132 4.132 23 C -0.195 4.195 24 C 0.074 3.926 25 O -0.239 6.239 26 C -0.079 4.079 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.469 -22.418 11.343 26.211 hybrid contribution -0.121 -0.012 -2.355 2.358 sum 7.348 -22.430 8.988 25.256 Atomic orbital electron populations 1.21773 0.94468 1.02677 1.01899 1.21719 0.96790 0.92013 1.04333 1.19708 0.88658 0.95296 0.87052 0.90448 1.45823 1.70432 1.05338 1.14495 1.20052 0.75875 0.82851 0.88958 1.90698 1.50042 1.64979 1.37913 1.23381 1.06030 1.00020 0.98685 1.85580 1.90750 0.97799 1.18144 1.23184 1.54098 0.95682 0.96609 0.89926 1.26118 0.94527 0.95493 1.02917 1.70182 1.47274 1.02130 1.35208 0.85018 0.79272 0.77130 0.76666 1.18561 1.20377 1.18724 1.19534 0.96815 1.04688 0.90301 1.20852 0.91688 1.00798 0.99729 1.17784 0.88895 1.08171 0.83242 1.91461 1.75262 1.94537 1.51631 1.21209 1.02137 0.99959 0.89910 1.21363 0.91489 1.06033 1.00659 1.18948 0.90265 0.96600 0.86769 1.86099 1.35805 1.88215 1.13803 1.23405 0.99903 1.02488 0.82087 0.92666 0.90543 0.93553 0.89530 0.89527 0.74616 0.87452 0.87053 0.92008 0.84000 0.82184 0.81414 0.90414 0.92220 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.80 71.98 0.71 -1.68 16 2 C -0.11 -1.82 5.45 30.60 0.17 -1.65 16 3 C 0.20 4.85 1.93 44.25 0.09 4.94 16 4 H 0.08 2.39 7.05 -2.39 -0.02 2.37 16 5 N -0.71 -18.32 3.36 -446.10 -1.50 -19.82 16 6 C 0.54 20.19 7.79 87.66 0.68 20.87 16 7 O -0.56 -26.58 15.54 -3.03 -0.05 -26.62 16 8 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.62 16 10 C -0.55 -31.67 9.50 67.95 0.65 -31.03 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.82 5.49 84.86 0.47 1.28 16 13 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 14 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 C -0.11 -2.84 5.00 -19.77 -0.10 -2.94 16 19 C -0.11 -2.86 9.29 22.30 0.21 -2.65 16 20 C 0.04 0.97 7.30 22.38 0.16 1.13 16 21 F -0.15 -4.07 17.26 44.97 0.78 -3.29 16 22 C -0.11 -2.32 10.02 22.30 0.22 -2.10 16 23 C -0.18 -3.37 9.04 22.36 0.20 -3.17 16 24 C 0.12 2.83 6.66 22.49 0.15 2.98 16 25 O -0.33 -7.12 9.57 -92.97 -0.89 -8.01 16 26 C 0.02 0.19 9.81 113.37 1.11 1.30 16 27 H 0.05 0.92 7.75 -2.38 -0.02 0.90 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.42 7.74 8.60 -92.71 -0.80 6.94 16 33 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.14 3.37 7.34 -2.91 -0.02 3.34 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.17 2.03 6.30 -2.91 -0.02 2.01 16 39 H 0.08 0.61 7.65 -2.39 -0.02 0.59 16 40 H 0.06 0.72 7.67 -2.39 -0.02 0.70 16 41 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -80.28 367.17 4.90 -75.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.26 Total: 19.79 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.15 Total: -17.50 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.21 Total: -76.18 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.94 Total: -34.63 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.62 kcal Total: -80.28 4.90 -75.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928784691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.848 kcal (2) G-P(sol) polarization free energy of solvation -80.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds