Wall clock time and date at job start Tue Mar 31 2020 15:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35637 * 125.67117 * 2 1 4 4 C 1.35520 * 108.84917 * 180.24048 * 3 2 1 5 5 Cl 1.73598 * 126.07467 * 179.69797 * 4 3 2 6 6 C 1.39895 * 107.85116 * 359.58075 * 4 3 2 7 7 C 1.37632 * 125.68027 * 179.97438 * 2 1 3 8 8 C 1.46668 * 126.22056 * 0.02562 * 7 2 1 9 9 O 1.21697 * 120.00199 * 5.21953 * 8 7 2 10 10 N 1.34784 * 120.00006 * 185.21791 * 8 7 2 11 11 C 1.46493 * 120.00086 * 184.65410 * 10 8 7 12 12 C 1.52998 * 109.47291 * 180.02562 * 11 10 8 13 13 H 1.08999 * 110.64101 * 54.29078 * 12 11 10 14 14 C 1.54331 * 110.71644 * 291.15139 * 12 11 10 15 15 N 1.47016 * 107.27226 * 219.44379 * 14 12 11 16 16 C 1.36935 * 125.64916 * 178.98132 * 15 14 12 17 17 H 1.08003 * 120.00021 * 346.19479 * 16 15 14 18 18 C 1.38811 * 120.00335 * 166.19905 * 16 15 14 19 19 N 1.31621 * 119.99866 * 2.30202 * 18 16 15 20 20 Si 1.86799 * 120.00325 * 182.30719 * 18 16 15 21 21 H 1.48494 * 109.47219 * 94.98696 * 20 18 16 22 22 H 1.48499 * 109.47077 * 214.99123 * 20 18 16 23 23 H 1.48505 * 109.46742 * 334.98725 * 20 18 16 24 24 C 1.47427 * 108.70411 * 358.93976 * 15 14 12 25 25 C 1.55125 * 104.93838 * 24.00539 * 24 15 14 26 26 H 1.09000 * 111.15996 * 205.12874 * 25 24 15 27 27 O 1.42898 * 110.93542 * 81.21484 * 25 24 15 28 28 H 1.08989 * 109.46882 * 87.65741 * 1 2 3 29 29 H 1.09001 * 109.46622 * 207.66158 * 1 2 3 30 30 H 1.09000 * 109.47381 * 327.65587 * 1 2 3 31 31 H 1.07993 * 125.57418 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.45279 * 180.12124 * 6 4 3 33 33 H 0.96994 * 119.99543 * 4.64869 * 10 8 7 34 34 H 1.08999 * 109.46786 * 299.99977 * 11 10 8 35 35 H 1.09000 * 109.47542 * 59.99553 * 11 10 8 36 36 H 1.08997 * 109.88199 * 338.86635 * 14 12 11 37 37 H 1.09003 * 109.87862 * 100.02498 * 14 12 11 38 38 H 0.97002 * 120.00306 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.36443 * 142.96546 * 24 15 14 40 40 H 1.09002 * 110.37013 * 265.18209 * 24 15 14 41 41 H 0.96699 * 114.00127 * 67.96195 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1019 0.0000 4 6 3.5532 0.7097 -0.0054 5 17 4.9377 1.7569 -0.0149 6 6 3.5784 -0.6890 0.0009 7 6 2.2678 -1.1180 0.0005 8 6 1.8122 -2.5121 0.0006 9 8 0.6255 -2.7645 -0.0957 10 7 2.7077 -3.5138 0.1073 11 6 2.2646 -4.9063 0.0050 12 6 3.4688 -5.8373 0.1600 13 1 4.0060 -5.6203 1.0833 14 6 4.4087 -5.7218 -1.0586 15 7 4.8861 -7.0765 -1.3717 16 6 5.7271 -7.4086 -2.4001 17 1 5.9199 -6.6985 -3.1908 18 6 6.3317 -8.6578 -2.4266 19 7 6.0616 -9.5397 -1.4876 20 14 7.5288 -9.0873 -3.7948 21 1 8.9167 -8.8173 -3.3411 22 1 7.3914 -10.5252 -4.1394 23 1 7.2296 -8.2607 -4.9918 24 6 4.3103 -8.0183 -0.3945 25 6 3.0229 -7.3229 0.1205 26 1 2.7556 -7.6771 1.1160 27 8 1.9412 -7.5088 -0.7946 28 1 -0.3633 0.0420 -1.0267 29 1 -0.3632 -0.9102 0.4771 30 1 -0.3634 0.8682 0.5498 31 1 1.9088 2.1245 -0.0004 32 1 4.4585 -1.3150 0.0007 33 1 3.6454 -3.3125 0.2516 34 1 1.5402 -5.1158 0.7921 35 1 1.8013 -5.0698 -0.9680 36 1 3.8633 -5.3148 -1.9101 37 1 5.2538 -5.0779 -0.8151 38 1 6.4844 -10.4125 -1.5059 39 1 4.0644 -8.9636 -0.8781 40 1 5.0058 -8.1836 0.4284 41 1 1.6282 -8.4219 -0.8533 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958243582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:29 Heat of formation + Delta-G solvation = -13.060730 kcal Electronic energy + Delta-G solvation = -25366.848011 eV Core-core repulsion = 21502.474080 eV Total energy + Delta-G solvation = -3864.373931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70564 -39.31858 -38.15056 -36.59530 -35.02885 -34.57369 -33.05191 -32.14508 -30.34867 -29.08366 -27.65636 -26.75121 -25.54784 -23.88250 -22.38045 -20.89336 -20.52010 -19.96355 -19.42003 -18.13335 -17.29932 -16.45729 -16.09496 -16.00092 -15.52645 -14.94559 -14.81410 -14.46521 -14.16251 -14.09246 -13.87196 -13.65251 -13.24425 -13.18857 -13.07093 -12.71552 -12.49793 -12.37064 -11.94256 -11.67150 -11.45013 -11.20365 -11.07291 -10.81021 -10.67008 -10.43886 -10.28665 -10.05929 -9.89825 -9.85528 -9.14715 -9.05767 -8.92908 -8.64129 -8.46682 -6.78975 -5.77595 -3.12006 1.19120 1.88300 2.19752 2.56325 3.22099 3.35125 3.38512 3.44304 3.46014 4.45785 4.50216 4.58587 4.62434 4.71772 4.92412 4.99809 5.11605 5.25727 5.28860 5.37876 5.38306 5.48157 5.58838 5.67753 5.86908 6.01092 6.09444 6.15802 6.30181 6.39786 6.45818 6.50057 6.63790 6.73882 6.84623 7.31387 7.48201 7.49184 7.72893 8.13025 8.18526 8.30531 9.16840 9.77953 10.45393 11.34692 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.002851 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.278213 B = 9817.682638 C =11342.646170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.404 5.404 3 C 0.028 3.972 4 C -0.121 4.121 5 Cl -0.050 7.050 6 C -0.129 4.129 7 C -0.032 4.032 8 C 0.587 3.413 9 O -0.549 6.549 10 N -0.711 5.711 11 C 0.143 3.857 12 C -0.106 4.106 13 H 0.088 0.912 14 C 0.144 3.856 15 N -0.597 5.597 16 C -0.225 4.225 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.147 3.853 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.558 6.558 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 18.773 7.053 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.076 5.076 3 C -0.109 4.109 4 C -0.154 4.154 5 Cl -0.022 7.022 6 C -0.155 4.155 7 C -0.146 4.146 8 C 0.374 3.626 9 O -0.429 6.429 10 N -0.361 5.361 11 C 0.020 3.980 12 C -0.126 4.126 13 H 0.106 0.894 14 C 0.018 3.982 15 N -0.323 5.323 16 C -0.353 4.353 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.021 3.979 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.364 6.364 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.194 0.806 32 H 0.173 0.827 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.401 19.081 6.803 22.772 hybrid contribution 1.339 -0.582 -0.532 1.554 sum -9.062 18.499 6.270 21.533 Atomic orbital electron populations 1.22360 0.75114 1.05634 1.04305 1.43783 1.07152 1.04514 1.52178 1.21696 0.88960 0.92155 1.08050 1.19899 0.88019 0.91395 1.16120 1.98331 1.40656 1.65509 1.97674 1.21282 0.95433 0.93298 1.05486 1.20117 0.89584 0.88186 1.16734 1.16835 0.85739 0.83154 0.76851 1.90786 1.16094 1.84754 1.51284 1.45796 1.11176 1.06488 1.72668 1.21287 0.96334 0.77206 1.03150 1.22509 0.95736 0.94118 1.00202 0.89420 1.21334 0.93991 0.89370 0.93494 1.44283 1.54638 1.00444 1.32920 1.19039 1.17658 0.99416 0.99190 0.90663 1.24869 0.99798 0.97081 0.98562 1.69894 1.46151 1.06401 1.34558 0.86089 0.81113 0.77432 0.81097 1.21561 1.21730 1.20553 1.22163 0.89081 0.94279 0.92342 1.23295 0.89094 0.94539 0.91158 0.92571 1.86395 1.51630 1.32625 1.65724 0.90124 0.87414 0.89750 0.80553 0.82688 0.76169 0.91487 0.89991 0.95437 0.96079 0.93712 0.90137 0.95164 0.77858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.59 59.85 0.63 1.15 16 2 N -0.40 -4.14 3.16 -120.19 -0.38 -4.52 16 3 C 0.03 0.26 11.36 -16.84 -0.19 0.06 16 4 C -0.12 -1.27 6.66 -39.93 -0.27 -1.53 16 5 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 6 C -0.13 -1.43 10.34 -39.09 -0.40 -1.83 16 7 C -0.03 -0.39 6.88 -81.98 -0.56 -0.95 16 8 C 0.59 8.26 7.77 -12.85 -0.10 8.16 16 9 O -0.55 -9.07 14.69 5.19 0.08 -8.99 16 10 N -0.71 -9.40 5.41 -61.63 -0.33 -9.73 16 11 C 0.14 2.16 4.54 -4.05 -0.02 2.15 16 12 C -0.11 -1.74 2.91 -88.79 -0.26 -2.00 16 13 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.14 2.91 6.64 -3.06 -0.02 2.89 16 15 N -0.60 -14.95 3.40 -169.94 -0.58 -15.53 16 16 C -0.22 -6.23 10.24 -15.06 -0.15 -6.38 16 17 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 19 N -0.92 -26.43 10.50 55.49 0.58 -25.84 16 20 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 3.37 5.19 -2.41 -0.01 3.36 16 25 C 0.08 1.41 4.19 -24.47 -0.10 1.31 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 O -0.56 -9.85 12.28 -35.23 -0.43 -10.28 16 28 H 0.08 0.58 8.14 -51.94 -0.42 0.16 16 29 H 0.11 1.04 6.30 -51.93 -0.33 0.71 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.16 1.50 7.48 -52.49 -0.39 1.11 16 33 H 0.40 4.57 7.34 -40.82 -0.30 4.27 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 36 H 0.03 0.59 7.73 -51.93 -0.40 0.18 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.08 2.06 6.79 -51.93 -0.35 1.71 16 40 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.37 5.30 9.12 45.56 0.42 5.71 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -33.41 355.80 -8.47 -41.88 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.67 Total: 6.66 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.55 Total: 6.09 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.71 Total: -55.62 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.36 Total: -19.27 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.41 -8.47 -41.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.820 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds