Wall clock time and date at job start Tue Mar 31 2020 15:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35637 * 125.67117 * 2 1 4 4 C 1.35520 * 108.84917 * 180.24048 * 3 2 1 5 5 Cl 1.73598 * 126.07467 * 179.69797 * 4 3 2 6 6 C 1.39895 * 107.85116 * 359.58075 * 4 3 2 7 7 C 1.37632 * 125.68027 * 179.97438 * 2 1 3 8 8 C 1.46668 * 126.22056 * 0.02562 * 7 2 1 9 9 O 1.21697 * 120.00199 * 5.21953 * 8 7 2 10 10 N 1.34784 * 120.00006 * 185.21791 * 8 7 2 11 11 C 1.46493 * 120.00086 * 184.65410 * 10 8 7 12 12 C 1.52998 * 109.47291 * 180.02562 * 11 10 8 13 13 H 1.08999 * 110.64101 * 54.29078 * 12 11 10 14 14 C 1.54331 * 110.71644 * 291.15139 * 12 11 10 15 15 N 1.47016 * 107.27226 * 219.44379 * 14 12 11 16 16 C 1.36935 * 125.64916 * 178.98132 * 15 14 12 17 17 H 1.08003 * 120.00021 * 346.19479 * 16 15 14 18 18 C 1.38811 * 120.00335 * 166.19905 * 16 15 14 19 19 N 1.31621 * 119.99866 * 2.30202 * 18 16 15 20 20 Si 1.86799 * 120.00325 * 182.30719 * 18 16 15 21 21 H 1.48494 * 109.47219 * 94.98696 * 20 18 16 22 22 H 1.48499 * 109.47077 * 214.99123 * 20 18 16 23 23 H 1.48505 * 109.46742 * 334.98725 * 20 18 16 24 24 C 1.47427 * 108.70411 * 358.93976 * 15 14 12 25 25 C 1.55125 * 104.93838 * 24.00539 * 24 15 14 26 26 H 1.09000 * 111.15996 * 205.12874 * 25 24 15 27 27 O 1.42898 * 110.93542 * 81.21484 * 25 24 15 28 28 H 1.08989 * 109.46882 * 87.65741 * 1 2 3 29 29 H 1.09001 * 109.46622 * 207.66158 * 1 2 3 30 30 H 1.09000 * 109.47381 * 327.65587 * 1 2 3 31 31 H 1.07993 * 125.57418 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.45279 * 180.12124 * 6 4 3 33 33 H 0.96994 * 119.99543 * 4.64869 * 10 8 7 34 34 H 1.08999 * 109.46786 * 299.99977 * 11 10 8 35 35 H 1.09000 * 109.47542 * 59.99553 * 11 10 8 36 36 H 1.08997 * 109.88199 * 338.86635 * 14 12 11 37 37 H 1.09003 * 109.87862 * 100.02498 * 14 12 11 38 38 H 0.97002 * 120.00306 * 180.02562 * 19 18 16 39 39 H 1.08994 * 110.36443 * 142.96546 * 24 15 14 40 40 H 1.09002 * 110.37013 * 265.18209 * 24 15 14 41 41 H 0.96699 * 114.00127 * 67.96195 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1019 0.0000 4 6 3.5532 0.7097 -0.0054 5 17 4.9377 1.7569 -0.0149 6 6 3.5784 -0.6890 0.0009 7 6 2.2678 -1.1180 0.0005 8 6 1.8122 -2.5121 0.0006 9 8 0.6255 -2.7645 -0.0957 10 7 2.7077 -3.5138 0.1073 11 6 2.2646 -4.9063 0.0050 12 6 3.4688 -5.8373 0.1600 13 1 4.0060 -5.6203 1.0833 14 6 4.4087 -5.7218 -1.0586 15 7 4.8861 -7.0765 -1.3717 16 6 5.7271 -7.4086 -2.4001 17 1 5.9199 -6.6985 -3.1908 18 6 6.3317 -8.6578 -2.4266 19 7 6.0616 -9.5397 -1.4876 20 14 7.5288 -9.0873 -3.7948 21 1 8.9167 -8.8173 -3.3411 22 1 7.3914 -10.5252 -4.1394 23 1 7.2296 -8.2607 -4.9918 24 6 4.3103 -8.0183 -0.3945 25 6 3.0229 -7.3229 0.1205 26 1 2.7556 -7.6771 1.1160 27 8 1.9412 -7.5088 -0.7946 28 1 -0.3633 0.0420 -1.0267 29 1 -0.3632 -0.9102 0.4771 30 1 -0.3634 0.8682 0.5498 31 1 1.9088 2.1245 -0.0004 32 1 4.4585 -1.3150 0.0007 33 1 3.6454 -3.3125 0.2516 34 1 1.5402 -5.1158 0.7921 35 1 1.8013 -5.0698 -0.9680 36 1 3.8633 -5.3148 -1.9101 37 1 5.2538 -5.0779 -0.8151 38 1 6.4844 -10.4125 -1.5059 39 1 4.0644 -8.9636 -0.8781 40 1 5.0058 -8.1836 0.4284 41 1 1.6282 -8.4219 -0.8533 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958243582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:28 Heat of formation + Delta-G solvation = -37.412102 kcal Electronic energy + Delta-G solvation = -25367.903966 eV Core-core repulsion = 21502.474080 eV Total energy + Delta-G solvation = -3865.429886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.51327 -40.51931 -39.57252 -37.35148 -36.34124 -36.15355 -34.16070 -33.56258 -31.74548 -30.32836 -29.24226 -27.42636 -27.22310 -25.40530 -23.50152 -22.21846 -21.62461 -21.30298 -20.55666 -19.14585 -18.98023 -18.00121 -17.19204 -16.87780 -16.81702 -16.52456 -16.05715 -15.65962 -15.57611 -15.35622 -14.94258 -14.59392 -14.53266 -14.42707 -14.00225 -13.87800 -13.78117 -13.60955 -13.16576 -13.16400 -13.03809 -12.65052 -12.40671 -12.34739 -12.04318 -11.89833 -11.86280 -11.84269 -11.61276 -11.07427 -10.72333 -10.69927 -10.19596 -9.72642 -9.26512 -8.79373 -7.87616 -5.23611 0.31777 1.14243 1.42369 1.46404 1.47091 1.56339 1.70893 2.22445 2.41935 2.49059 3.25263 3.38742 3.61407 3.65634 3.88920 3.92078 3.95451 4.01010 4.03192 4.24431 4.38961 4.44618 4.54179 4.59628 4.65602 4.73793 4.84688 4.90332 4.94994 5.03107 5.28451 5.35059 5.41655 5.46532 5.50395 5.69350 5.70347 6.03836 6.22753 6.45127 6.96543 7.08759 7.11026 7.76965 8.42922 9.22635 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.002851 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.278213 B = 9817.682638 C =11342.646170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.407 5.407 3 C 0.050 3.950 4 C -0.143 4.143 5 Cl -0.047 7.047 6 C -0.126 4.126 7 C -0.062 4.062 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.706 5.706 11 C 0.160 3.840 12 C -0.091 4.091 13 H 0.114 0.886 14 C 0.142 3.858 15 N -0.620 5.620 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.059 4.059 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.272 1.272 24 C 0.150 3.850 25 C 0.093 3.907 26 H 0.093 0.907 27 O -0.569 6.569 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.213 0.787 32 H 0.163 0.837 33 H 0.413 0.587 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.031 0.969 38 H 0.248 0.752 39 H 0.046 0.954 40 H 0.009 0.991 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.862 20.874 7.654 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.079 5.079 3 C -0.088 4.088 4 C -0.175 4.175 5 Cl -0.019 7.019 6 C -0.153 4.153 7 C -0.175 4.175 8 C 0.376 3.624 9 O -0.462 6.462 10 N -0.356 5.356 11 C 0.036 3.964 12 C -0.110 4.110 13 H 0.132 0.868 14 C 0.017 3.983 15 N -0.347 5.347 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.024 3.976 25 C 0.033 3.967 26 H 0.110 0.890 27 O -0.376 6.376 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.230 0.770 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.792 21.195 7.410 24.912 hybrid contribution 1.445 -1.154 -0.744 1.994 sum -9.347 20.040 6.666 23.096 Atomic orbital electron populations 1.22495 0.73867 1.06248 1.04975 1.44029 1.08024 1.04248 1.51583 1.22278 0.88325 0.93170 1.05018 1.20042 0.88844 0.91252 1.17411 1.98331 1.40616 1.65216 1.97731 1.21471 0.95369 0.94042 1.04429 1.19879 0.90367 0.87769 1.19507 1.17094 0.85290 0.84022 0.76037 1.90767 1.17295 1.85333 1.52783 1.45657 1.11705 1.05706 1.72568 1.20945 0.95548 0.77978 1.01913 1.22449 0.95413 0.93690 0.99488 0.86757 1.21448 0.94823 0.87296 0.94751 1.44594 1.54552 1.02814 1.32691 1.19344 1.18137 0.99573 1.00088 0.90975 1.25632 1.01553 0.97105 1.00982 1.70090 1.46895 1.06381 1.36065 0.85112 0.78929 0.76838 0.78760 1.21205 1.21924 1.19728 1.22027 0.91133 0.93383 0.91016 1.23171 0.86637 0.94611 0.92328 0.88951 1.86380 1.51128 1.34099 1.66039 0.89684 0.89513 0.86144 0.77017 0.81972 0.75024 0.90657 0.92710 0.96724 0.95097 0.94231 0.93550 0.97306 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.59 127.77 1.35 2.23 16 2 N -0.41 -7.51 3.16 -534.17 -1.69 -9.20 16 3 C 0.05 0.76 11.36 83.48 0.95 1.71 16 4 C -0.14 -2.69 6.66 22.04 0.15 -2.54 16 5 Cl -0.05 -0.85 29.30 -2.72 -0.08 -0.93 16 6 C -0.13 -2.63 10.34 22.59 0.23 -2.40 16 7 C -0.06 -1.43 6.88 40.35 0.28 -1.15 16 8 C 0.59 16.16 7.77 86.44 0.67 16.83 16 9 O -0.58 -19.06 14.69 -4.34 -0.06 -19.13 16 10 N -0.71 -17.95 5.41 -467.10 -2.53 -20.47 16 11 C 0.16 4.65 4.54 86.38 0.39 5.04 16 12 C -0.09 -2.85 2.91 -9.61 -0.03 -2.88 16 13 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 14 C 0.14 5.70 6.64 86.73 0.58 6.27 16 15 N -0.62 -31.49 3.40 -691.56 -2.35 -33.84 16 16 C -0.24 -13.65 10.24 84.03 0.86 -12.79 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.06 -3.34 5.48 84.86 0.47 -2.88 16 19 N -0.95 -55.44 10.50 21.65 0.23 -55.22 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.15 6.98 5.19 86.93 0.45 7.43 16 25 C 0.09 3.18 4.19 32.06 0.13 3.32 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 O -0.57 -19.63 12.28 -148.98 -1.83 -21.46 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.61 6.30 -2.39 -0.02 1.60 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.21 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.16 2.95 7.48 -2.91 -0.02 2.92 16 33 H 0.41 8.80 7.34 -92.71 -0.68 8.12 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.93 7.49 -2.39 -0.02 1.91 16 36 H 0.01 0.63 7.73 -2.39 -0.02 0.61 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.05 2.45 6.79 -2.39 -0.02 2.44 16 40 H 0.01 0.45 8.10 -2.39 -0.02 0.43 16 41 H 0.39 10.74 9.12 -74.06 -0.68 10.06 16 Total: -1.00 -73.70 355.80 -0.08 -73.78 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.28 Total: 20.60 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.48 Total: 18.19 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -6.34 Total: -118.73 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.89 Total: -40.59 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -73.70 -0.08 -73.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds