Wall clock time and date at job start Tue Mar 31 2020 15:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47356 * 2 1 4 4 N 1.46500 * 109.47175 * 120.00476 * 2 1 3 5 5 C 1.34769 * 119.99997 * 274.99760 * 4 2 1 6 6 O 1.21588 * 119.99732 * 359.97438 * 5 4 2 7 7 C 1.47518 * 120.00217 * 180.02562 * 5 4 2 8 8 C 1.36780 * 126.92689 * 179.71118 * 7 5 4 9 9 C 1.41408 * 103.83696 * 179.87220 * 8 7 5 10 10 Cl 1.73606 * 126.72804 * 180.13424 * 9 8 7 11 11 N 1.30226 * 106.54821 * 0.39245 * 9 8 7 12 12 O 1.20877 * 111.96155 * 359.74296 * 11 9 8 13 13 C 1.53009 * 109.46539 * 240.00247 * 2 1 3 14 14 C 1.53037 * 109.45462 * 180.02562 * 13 2 1 15 15 C 1.53194 * 109.31163 * 178.61502 * 14 13 2 16 16 N 1.46925 * 108.77732 * 54.63103 * 15 14 13 17 17 C 1.36939 * 120.62861 * 126.41174 * 16 15 14 18 18 H 1.07997 * 120.00082 * 207.65856 * 17 16 15 19 19 C 1.38816 * 120.00073 * 27.66621 * 17 16 15 20 20 N 1.31616 * 119.99614 * 17.37425 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 197.37440 * 19 17 16 22 22 H 1.48501 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47013 * 120.00030 * 21 19 17 24 24 H 1.48497 * 109.47020 * 239.99492 * 21 19 17 25 25 C 1.46921 * 118.73852 * 306.39767 * 16 15 14 26 26 C 1.53042 * 109.46047 * 60.00224 * 13 2 1 27 27 H 1.09007 * 109.47165 * 59.99666 * 1 2 3 28 28 H 1.08992 * 109.47586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46933 * 299.99921 * 1 2 3 30 30 H 0.96996 * 119.99594 * 94.99301 * 4 2 1 31 31 H 1.08001 * 128.08492 * 359.97438 * 8 7 5 32 32 H 1.08993 * 109.46078 * 300.02591 * 13 2 1 33 33 H 1.09000 * 109.50192 * 298.56566 * 14 13 2 34 34 H 1.08998 * 109.50147 * 58.66258 * 14 13 2 35 35 H 1.09002 * 109.58463 * 294.84856 * 15 14 13 36 36 H 1.09002 * 109.58885 * 174.42129 * 15 14 13 37 37 H 0.97003 * 119.99546 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.58841 * 293.81621 * 25 16 15 39 39 H 1.09008 * 109.58468 * 173.39292 * 25 16 15 40 40 H 1.09000 * 109.49476 * 301.33514 * 26 13 2 41 41 H 1.08997 * 109.49940 * 61.43361 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8584 1.1614 2.4116 7 6 2.6394 -0.7138 3.5614 8 6 2.8288 -0.1724 4.8031 9 6 3.3030 -1.2573 5.5763 10 17 3.7316 -1.2245 7.2583 11 7 3.3606 -2.2846 4.7779 12 8 2.9983 -2.0079 3.6584 13 6 2.0399 -0.7213 -1.2494 14 6 3.5703 -0.7217 -1.2488 15 6 4.0771 -1.4745 -2.4830 16 7 3.4743 -0.8769 -3.6822 17 6 4.2600 -0.4513 -4.7199 18 1 3.9209 0.3489 -5.3610 19 6 5.4923 -1.0484 -4.9477 20 7 5.7650 -2.2194 -4.4124 21 14 6.7632 -0.1899 -6.0140 22 1 6.2146 1.1042 -6.4932 23 1 7.9919 0.0572 -5.2176 24 1 7.0932 -1.0491 -7.1794 25 6 2.0124 -0.7449 -3.7470 26 6 1.5296 0.0005 -2.4987 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2489 -1.6318 1.1524 31 1 2.6549 0.8454 5.1197 32 1 1.6761 -1.7487 -1.2495 33 1 3.9344 0.3054 -1.2742 34 1 3.9337 -1.2148 -0.3472 35 1 3.7904 -2.5239 -2.4142 36 1 5.1626 -1.3931 -2.5404 37 1 6.6263 -2.6365 -4.5713 38 1 1.5573 -1.7347 -3.7813 39 1 1.7355 -0.1820 -4.6385 40 1 0.4399 0.0216 -2.4870 41 1 1.9136 1.0205 -2.5120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997401991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:11 Heat of formation + Delta-G solvation = 38.001882 kcal Electronic energy + Delta-G solvation = -25570.511630 eV Core-core repulsion = 21708.351941 eV Total energy + Delta-G solvation = -3862.159690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.59295 -40.15441 -38.07802 -37.57258 -35.56256 -34.16100 -33.24703 -32.41825 -30.95471 -30.27667 -28.87558 -25.63615 -24.83317 -24.05519 -22.95112 -22.02632 -21.27945 -20.62415 -19.53242 -18.78025 -18.37061 -16.85791 -16.62838 -16.35439 -15.59197 -15.17392 -14.83001 -14.39898 -14.20844 -14.08526 -13.56094 -13.45039 -13.39713 -13.18739 -13.02769 -12.84700 -12.44593 -12.32104 -11.76464 -11.60386 -11.52631 -11.27112 -11.00960 -10.73324 -10.60221 -10.52151 -10.45378 -10.25927 -10.22788 -10.20467 -9.91766 -9.59363 -9.53328 -9.17795 -8.47849 -6.68345 -5.79907 -3.21594 0.31520 0.98032 1.35563 2.14654 2.67578 2.92415 3.36563 3.44887 3.46806 3.78085 4.24412 4.48075 4.49546 4.56951 4.84984 5.09993 5.20599 5.24163 5.35577 5.44076 5.55677 5.64021 5.73906 5.86559 6.01312 6.02704 6.19631 6.21250 6.30732 6.49518 6.56056 6.64799 6.73313 6.79511 6.95825 7.08366 7.35733 7.44103 7.64161 7.75262 7.79351 8.44282 9.20782 9.84515 10.40604 11.28511 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002647 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.894254 B =10574.686663 C =11653.006807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.092 0.908 4 N -0.698 5.698 5 C 0.604 3.396 6 O -0.510 6.510 7 C -0.064 4.064 8 C -0.140 4.140 9 C 0.050 3.950 10 Cl 0.032 6.968 11 N -0.325 5.325 12 O 0.140 5.860 13 C -0.085 4.085 14 C -0.136 4.136 15 C 0.171 3.829 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.145 3.855 26 C -0.125 4.125 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.408 0.592 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.017 0.983 36 H 0.087 0.913 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 2.221 18.922 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.386 3.614 6 O -0.385 6.385 7 C -0.130 4.130 8 C -0.163 4.163 9 C -0.133 4.133 10 Cl 0.060 6.940 11 N -0.025 5.025 12 O 0.062 5.938 13 C -0.104 4.104 14 C -0.175 4.175 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.165 4.165 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.244 0.756 31 H 0.212 0.788 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.730 1.724 19.239 21.198 hybrid contribution 0.811 0.578 -0.070 0.999 sum -7.919 2.302 19.169 20.868 Atomic orbital electron populations 1.22229 0.95069 1.02299 1.02615 1.21349 0.93926 0.97741 0.83016 0.89019 1.46059 1.64999 1.14629 1.09139 1.16421 0.78420 0.85684 0.80852 1.90894 1.50217 1.13881 1.83536 1.24367 1.05586 0.84924 0.98114 1.22736 1.01591 1.01572 0.90381 1.24071 1.06154 0.91539 0.91527 1.98429 1.91383 1.98200 1.05987 1.73883 1.15009 1.22688 0.90944 1.85083 1.59513 1.25461 1.23730 1.21362 0.97380 0.99203 0.92487 1.22251 0.93450 1.01732 1.00069 1.20766 0.99511 0.92676 0.82529 1.44070 0.99534 1.72020 1.15922 1.19225 0.99120 1.12114 1.07580 0.91670 1.25028 1.00065 0.95339 0.99305 1.70041 1.22633 1.14089 1.47959 0.86253 0.81778 0.79132 0.79806 1.20262 1.21583 1.21762 1.20894 0.86117 0.96443 0.94652 1.22086 0.98770 1.00039 0.95608 0.90686 0.92338 0.92532 0.75618 0.78850 0.91160 0.92563 0.93456 0.96501 0.89500 0.93723 0.96509 0.92758 0.92569 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.13 37.16 0.34 -1.39 16 2 C 0.14 1.74 2.16 -67.92 -0.15 1.59 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.70 -7.66 4.36 -54.85 -0.24 -7.90 16 5 C 0.60 7.12 7.78 -12.48 -0.10 7.02 16 6 O -0.51 -7.36 16.58 5.29 0.09 -7.27 16 7 C -0.06 -0.67 7.29 -36.33 -0.26 -0.93 16 8 C -0.14 -1.32 10.96 -38.90 -0.43 -1.74 16 9 C 0.05 0.50 7.97 -17.03 -0.14 0.37 16 10 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 11 N -0.33 -3.72 12.05 32.82 0.40 -3.32 16 12 O 0.14 1.49 11.04 15.54 0.17 1.66 16 13 C -0.09 -1.22 1.79 -90.57 -0.16 -1.38 16 14 C -0.14 -2.35 5.22 -26.61 -0.14 -2.49 16 15 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 16 N -0.59 -14.25 2.99 -172.32 -0.52 -14.77 16 17 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 20 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 21 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.15 2.85 6.52 -3.71 -0.02 2.83 16 26 C -0.13 -1.93 5.04 -26.61 -0.13 -2.06 16 27 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.41 3.86 8.21 -40.82 -0.34 3.52 16 31 H 0.19 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.73 7.41 -51.93 -0.38 0.34 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.06 7.93 -51.92 -0.41 0.64 16 40 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -30.04 353.27 -7.58 -37.62 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.43 Total: -0.10 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.44 Total: -1.28 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.26 Total: -51.15 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: 0.26 Total: -5.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.04 -7.58 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997401991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.619 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds