Wall clock time and date at job start Tue Mar 31 2020 15:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47356 * 2 1 4 4 N 1.46500 * 109.47175 * 120.00476 * 2 1 3 5 5 C 1.34769 * 119.99997 * 274.99760 * 4 2 1 6 6 O 1.21588 * 119.99732 * 359.97438 * 5 4 2 7 7 C 1.47518 * 120.00217 * 180.02562 * 5 4 2 8 8 C 1.36780 * 126.92689 * 179.71118 * 7 5 4 9 9 C 1.41408 * 103.83696 * 179.87220 * 8 7 5 10 10 Cl 1.73606 * 126.72804 * 180.13424 * 9 8 7 11 11 N 1.30226 * 106.54821 * 0.39245 * 9 8 7 12 12 O 1.20877 * 111.96155 * 359.74296 * 11 9 8 13 13 C 1.53009 * 109.46539 * 240.00247 * 2 1 3 14 14 C 1.53037 * 109.45462 * 180.02562 * 13 2 1 15 15 C 1.53194 * 109.31163 * 178.61502 * 14 13 2 16 16 N 1.46925 * 108.77732 * 54.63103 * 15 14 13 17 17 C 1.36939 * 120.62861 * 126.41174 * 16 15 14 18 18 H 1.07997 * 120.00082 * 207.65856 * 17 16 15 19 19 C 1.38816 * 120.00073 * 27.66621 * 17 16 15 20 20 N 1.31616 * 119.99614 * 17.37425 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 197.37440 * 19 17 16 22 22 H 1.48501 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47013 * 120.00030 * 21 19 17 24 24 H 1.48497 * 109.47020 * 239.99492 * 21 19 17 25 25 C 1.46921 * 118.73852 * 306.39767 * 16 15 14 26 26 C 1.53042 * 109.46047 * 60.00224 * 13 2 1 27 27 H 1.09007 * 109.47165 * 59.99666 * 1 2 3 28 28 H 1.08992 * 109.47586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46933 * 299.99921 * 1 2 3 30 30 H 0.96996 * 119.99594 * 94.99301 * 4 2 1 31 31 H 1.08001 * 128.08492 * 359.97438 * 8 7 5 32 32 H 1.08993 * 109.46078 * 300.02591 * 13 2 1 33 33 H 1.09000 * 109.50192 * 298.56566 * 14 13 2 34 34 H 1.08998 * 109.50147 * 58.66258 * 14 13 2 35 35 H 1.09002 * 109.58463 * 294.84856 * 15 14 13 36 36 H 1.09002 * 109.58885 * 174.42129 * 15 14 13 37 37 H 0.97003 * 119.99546 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.58841 * 293.81621 * 25 16 15 39 39 H 1.09008 * 109.58468 * 173.39292 * 25 16 15 40 40 H 1.09000 * 109.49476 * 301.33514 * 26 13 2 41 41 H 1.08997 * 109.49940 * 61.43361 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8584 1.1614 2.4116 7 6 2.6394 -0.7138 3.5614 8 6 2.8288 -0.1724 4.8031 9 6 3.3030 -1.2573 5.5763 10 17 3.7316 -1.2245 7.2583 11 7 3.3606 -2.2846 4.7779 12 8 2.9983 -2.0079 3.6584 13 6 2.0399 -0.7213 -1.2494 14 6 3.5703 -0.7217 -1.2488 15 6 4.0771 -1.4745 -2.4830 16 7 3.4743 -0.8769 -3.6822 17 6 4.2600 -0.4513 -4.7199 18 1 3.9209 0.3489 -5.3610 19 6 5.4923 -1.0484 -4.9477 20 7 5.7650 -2.2194 -4.4124 21 14 6.7632 -0.1899 -6.0140 22 1 6.2146 1.1042 -6.4932 23 1 7.9919 0.0572 -5.2176 24 1 7.0932 -1.0491 -7.1794 25 6 2.0124 -0.7449 -3.7470 26 6 1.5296 0.0005 -2.4987 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.2489 -1.6318 1.1524 31 1 2.6549 0.8454 5.1197 32 1 1.6761 -1.7487 -1.2495 33 1 3.9344 0.3054 -1.2742 34 1 3.9337 -1.2148 -0.3472 35 1 3.7904 -2.5239 -2.4142 36 1 5.1626 -1.3931 -2.5404 37 1 6.6263 -2.6365 -4.5713 38 1 1.5573 -1.7347 -3.7813 39 1 1.7355 -0.1820 -4.6385 40 1 0.4399 0.0216 -2.4870 41 1 1.9136 1.0205 -2.5120 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997401991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:11 Heat of formation + Delta-G solvation = 19.784940 kcal Electronic energy + Delta-G solvation = -25571.301576 eV Core-core repulsion = 21708.351941 eV Total energy + Delta-G solvation = -3862.949636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.39886 -41.15529 -39.43110 -38.28486 -36.91084 -35.00652 -34.59780 -33.54234 -32.37111 -31.78547 -30.23718 -27.16774 -25.97054 -24.85337 -24.31879 -23.54995 -22.36806 -21.66507 -20.89554 -19.87411 -19.19108 -18.64489 -17.52860 -17.36424 -16.84213 -16.42119 -16.08589 -15.73605 -15.30270 -15.23257 -14.95626 -14.84757 -14.72796 -14.32201 -13.97589 -13.90427 -13.62790 -13.55242 -13.17639 -13.04562 -12.75828 -12.62067 -12.39379 -12.24697 -12.13669 -11.93959 -11.77171 -11.61067 -11.43492 -11.26410 -11.10649 -11.06503 -11.04568 -10.51613 -10.20682 -8.63952 -7.85356 -5.29059 -0.50465 0.24375 0.57873 1.30383 1.45444 1.48127 1.57822 1.78123 2.06041 2.52476 2.98777 3.28737 3.48036 3.65157 3.72970 3.76497 3.81700 3.99839 4.08944 4.45625 4.50644 4.53108 4.59714 4.64105 4.79060 4.84155 4.95498 5.02694 5.08996 5.14602 5.22200 5.34162 5.41706 5.44576 5.48936 5.59458 5.69579 5.83128 6.19866 6.42284 6.63711 6.86175 7.18473 7.91793 8.41262 9.20412 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002647 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.894254 B =10574.686663 C =11653.006807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.077 0.923 4 N -0.693 5.693 5 C 0.610 3.390 6 O -0.537 6.537 7 C -0.070 4.070 8 C -0.129 4.129 9 C 0.047 3.953 10 Cl 0.046 6.954 11 N -0.344 5.344 12 O 0.140 5.860 13 C -0.075 4.075 14 C -0.122 4.122 15 C 0.177 3.823 16 N -0.613 5.613 17 C -0.258 4.258 18 H 0.065 0.935 19 C -0.053 4.053 20 N -0.934 5.934 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.139 3.861 26 C -0.114 4.114 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.417 0.583 31 H 0.214 0.786 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.066 0.934 35 H -0.001 1.001 36 H 0.047 0.953 37 H 0.248 0.752 38 H 0.018 0.982 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 2.984 20.075 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.096 0.904 4 N -0.344 5.344 5 C 0.393 3.607 6 O -0.415 6.415 7 C -0.136 4.136 8 C -0.152 4.152 9 C -0.136 4.136 10 Cl 0.074 6.926 11 N -0.044 5.044 12 O 0.063 5.937 13 C -0.094 4.094 14 C -0.161 4.161 15 C 0.051 3.949 16 N -0.336 5.336 17 C -0.388 4.388 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.580 5.580 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.014 3.986 26 C -0.153 4.153 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.254 0.746 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.155 2.485 20.398 22.922 hybrid contribution 1.222 0.313 -0.405 1.325 sum -8.933 2.798 19.994 22.076 Atomic orbital electron populations 1.22184 0.93172 1.03293 1.02980 1.21115 0.95210 0.96526 0.82173 0.90438 1.45990 1.64672 1.15003 1.08697 1.16421 0.77846 0.85273 0.81111 1.90884 1.51520 1.15017 1.84031 1.24159 1.06411 0.85057 0.98000 1.23013 1.00209 1.02184 0.89746 1.24258 1.05783 0.91392 0.92178 1.98437 1.91224 1.98152 1.04813 1.73864 1.15727 1.23467 0.91374 1.85068 1.59615 1.25497 1.23560 1.21234 0.94773 1.00083 0.93339 1.22028 0.95933 1.00038 0.98074 1.20574 0.97335 0.92489 0.84505 1.44362 1.01418 1.72075 1.15789 1.19535 0.99719 1.11713 1.07857 0.91771 1.25733 1.01880 0.96022 1.01139 1.70183 1.22706 1.15435 1.49701 0.85294 0.79280 0.78391 0.78038 1.19177 1.21886 1.21987 1.21094 0.83602 0.97025 0.96916 1.21954 1.00911 0.98785 0.93697 0.89823 0.91016 0.92695 0.74598 0.76952 0.90098 0.93930 0.91531 0.98260 0.93484 0.94267 0.96418 0.93024 0.88850 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.13 71.98 0.66 -2.15 16 2 C 0.15 3.35 2.16 44.99 0.10 3.45 16 3 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 4 N -0.69 -13.74 4.36 -445.72 -1.94 -15.68 16 5 C 0.61 13.31 7.78 86.69 0.67 13.98 16 6 O -0.54 -14.63 16.58 -3.99 -0.07 -14.69 16 7 C -0.07 -1.35 7.29 24.38 0.18 -1.17 16 8 C -0.13 -2.18 10.96 22.71 0.25 -1.94 16 9 C 0.05 0.86 7.97 85.71 0.68 1.55 16 10 Cl 0.05 0.70 29.33 -2.72 -0.08 0.62 16 11 N -0.34 -7.42 12.05 -51.03 -0.61 -8.03 16 12 O 0.14 2.80 11.04 65.80 0.73 3.52 16 13 C -0.08 -1.99 1.79 -10.76 -0.02 -2.01 16 14 C -0.12 -4.14 5.22 30.67 0.16 -3.98 16 15 C 0.18 8.15 5.31 86.36 0.46 8.61 16 16 N -0.61 -29.76 2.99 -699.08 -2.09 -31.86 16 17 C -0.26 -14.04 9.59 84.03 0.81 -13.23 16 18 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 19 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 20 N -0.93 -54.96 11.19 21.65 0.24 -54.72 16 21 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 25 C 0.14 5.32 6.52 86.36 0.56 5.88 16 26 C -0.11 -3.25 5.04 30.67 0.15 -3.10 16 27 H 0.08 1.35 6.40 -2.38 -0.02 1.33 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.42 6.94 8.21 -92.71 -0.76 6.18 16 31 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.99 7.41 -2.39 -0.02 1.97 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.05 2.54 6.04 -2.39 -0.01 2.52 16 37 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 1.97 7.93 -2.38 -0.02 1.95 16 40 H 0.09 2.02 6.36 -2.39 -0.02 2.00 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.95 353.27 3.59 -62.36 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.31 Total: 8.14 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.08 Total: 3.38 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.41 Total: -110.29 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.66 Total: -11.17 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -65.95 3.59 -62.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997401991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.145 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds