Wall clock time and date at job start Tue Mar 31 2020 15:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47093 * 2 1 4 4 N 1.46497 * 109.47694 * 239.99557 * 2 1 3 5 5 C 1.34778 * 119.99913 * 84.99555 * 4 2 1 6 6 O 1.21585 * 119.99923 * 0.02562 * 5 4 2 7 7 C 1.47518 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.36781 * 126.92954 * 180.02562 * 7 5 4 9 9 C 1.41407 * 103.83748 * 179.97438 * 8 7 5 10 10 Cl 1.73604 * 126.72273 * 180.02562 * 9 8 7 11 11 N 1.30224 * 106.55226 * 359.97438 * 9 8 7 12 12 O 1.20877 * 111.95807 * 359.72568 * 11 9 8 13 13 C 1.53005 * 109.47269 * 119.99243 * 2 1 3 14 14 H 1.08998 * 109.52602 * 180.02562 * 13 2 1 15 15 C 1.53039 * 109.49605 * 300.16549 * 13 2 1 16 16 C 1.53358 * 109.60526 * 181.31987 * 15 13 2 17 17 C 1.53190 * 109.15073 * 298.71334 * 16 15 13 18 18 N 1.46934 * 108.89394 * 54.57373 * 17 16 15 19 19 C 1.36935 * 120.62776 * 126.33972 * 18 17 16 20 20 H 1.08003 * 120.00334 * 331.82288 * 19 18 17 21 21 C 1.38816 * 120.00109 * 151.82327 * 19 18 17 22 22 N 1.31624 * 119.99356 * 343.07479 * 21 19 18 23 23 Si 1.86793 * 120.00395 * 163.07501 * 21 19 18 24 24 H 1.48500 * 109.47341 * 59.99642 * 23 21 19 25 25 H 1.48496 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46651 * 299.99824 * 23 21 19 27 27 C 1.46927 * 118.73962 * 306.32403 * 18 17 16 28 28 H 1.08995 * 109.46724 * 60.00485 * 1 2 3 29 29 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47191 * 300.00442 * 1 2 3 31 31 H 0.96995 * 120.00177 * 265.00615 * 4 2 1 32 32 H 1.08002 * 128.08462 * 359.97239 * 8 7 5 33 33 H 1.08994 * 109.46381 * 301.33378 * 15 13 2 34 34 H 1.09004 * 109.45867 * 61.31091 * 15 13 2 35 35 H 1.08993 * 109.68345 * 178.74904 * 16 15 13 36 36 H 1.09002 * 109.46954 * 58.54958 * 16 15 13 37 37 H 1.09005 * 109.58787 * 294.71926 * 17 16 15 38 38 H 1.09000 * 109.58862 * 174.43601 * 17 16 15 39 39 H 0.96997 * 119.99488 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.58430 * 173.39008 * 27 18 17 41 41 H 1.09000 * 109.58086 * 293.67640 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 6 2.6385 -0.7140 -3.5616 8 6 2.8230 -0.1739 -4.8047 9 6 3.3020 -1.2576 -5.5765 10 17 3.7315 -1.2245 -7.2583 11 7 3.3590 -2.2850 -4.7784 12 8 3.0022 -2.0069 -3.6574 13 6 2.0401 -0.7211 1.2494 14 1 3.1300 -0.7212 1.2505 15 6 1.5269 -0.0024 2.4992 16 6 2.0637 -0.7036 3.7530 17 6 1.5533 -2.1478 3.7784 18 7 1.9180 -2.8037 2.5152 19 6 2.6065 -3.9873 2.5171 20 1 3.2674 -4.2264 3.3373 21 6 2.4551 -4.8801 1.4650 22 7 1.4301 -4.7656 0.6472 23 14 3.7059 -6.2437 1.2096 24 1 3.7447 -7.1118 2.4139 25 1 3.3200 -7.0542 0.0267 26 1 5.0479 -5.6487 0.9850 27 6 1.5297 -2.1655 1.2500 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2491 -1.6318 -1.1524 32 1 2.6444 0.8427 -5.1226 33 1 1.8681 1.0327 2.4888 34 1 0.4371 -0.0254 2.5096 35 1 1.7170 -0.1796 4.6436 36 1 3.1535 -0.7033 3.7310 37 1 0.4691 -2.1503 3.8916 38 1 2.0089 -2.6818 4.6123 39 1 1.3241 -5.3897 -0.0877 40 1 1.9720 -2.7097 0.4155 41 1 0.4438 -2.1717 1.1560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025601657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:55 Heat of formation + Delta-G solvation = 39.467855 kcal Electronic energy + Delta-G solvation = -26221.479364 eV Core-core repulsion = 22359.383243 eV Total energy + Delta-G solvation = -3862.096120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.37166 -39.94966 -38.07075 -37.40949 -35.29406 -33.94161 -33.22118 -32.48180 -31.15317 -29.91628 -28.27627 -25.35487 -25.05656 -23.83609 -23.35428 -22.26808 -21.10297 -20.28903 -19.12582 -18.43502 -18.13642 -16.83521 -16.43440 -16.08906 -15.37647 -15.07423 -14.77569 -14.25348 -14.14026 -13.96878 -13.85321 -13.63028 -13.08058 -13.01674 -12.68928 -12.63019 -12.44860 -12.25019 -11.82723 -11.61523 -11.34798 -11.06521 -10.87389 -10.68502 -10.52899 -10.35270 -10.33558 -10.24010 -10.15446 -10.04800 -9.94818 -9.60694 -9.46073 -9.01069 -8.51335 -6.70550 -5.84561 -3.26629 0.52958 1.14711 1.55328 2.38546 2.88676 3.17322 3.36105 3.43407 3.43998 3.98838 4.44339 4.45790 4.69501 4.79279 5.04369 5.23411 5.36890 5.37948 5.47843 5.53282 5.63518 5.69835 5.81465 5.97024 6.11980 6.19191 6.22851 6.33756 6.44292 6.46299 6.58585 6.63799 6.78048 6.81170 6.97624 7.22052 7.36570 7.50717 7.68253 7.74878 7.99333 8.39297 9.16421 9.79055 10.36129 11.23787 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003976 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.306543 B = 7040.203904 C = 9073.925322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 H 0.084 0.916 4 N -0.695 5.695 5 C 0.603 3.397 6 O -0.518 6.518 7 C -0.061 4.061 8 C -0.143 4.143 9 C 0.048 3.952 10 Cl 0.029 6.971 11 N -0.324 5.324 12 O 0.146 5.854 13 C -0.125 4.125 14 H 0.071 0.929 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.899 3.101 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.175 3.825 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.416 0.584 32 H 0.193 0.807 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.052 0.948 39 H 0.255 0.745 40 H 0.084 0.916 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 10.927 -8.218 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 H 0.102 0.898 4 N -0.346 5.346 5 C 0.385 3.615 6 O -0.395 6.395 7 C -0.127 4.127 8 C -0.167 4.167 9 C -0.135 4.135 10 Cl 0.056 6.944 11 N -0.023 5.023 12 O 0.068 5.932 13 C -0.146 4.146 14 H 0.089 0.911 15 C -0.139 4.139 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.729 3.271 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.049 3.951 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.254 0.746 32 H 0.211 0.789 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.122 10.356 -8.709 13.577 hybrid contribution 0.659 -0.508 -0.619 1.037 sum 1.782 9.848 -9.327 13.680 Atomic orbital electron populations 1.22284 0.94969 1.03404 1.01873 1.21134 0.94524 0.96429 0.83142 0.89802 1.46220 1.64199 1.15267 1.08928 1.16450 0.78467 0.85648 0.80959 1.90858 1.50906 1.14000 1.83699 1.24395 1.05193 0.85005 0.98123 1.22685 1.02069 1.01528 0.90392 1.24053 1.06497 0.91588 0.91383 1.98416 1.91411 1.98211 1.06315 1.73918 1.14938 1.22532 0.90960 1.85153 1.59269 1.25434 1.23383 1.22171 1.00848 0.99719 0.91826 0.91078 1.21478 1.00364 0.97506 0.94552 1.22057 1.00693 0.98322 0.96266 1.20927 0.96386 0.90986 0.89980 1.43985 1.65423 1.22532 0.99397 1.19149 1.17890 0.94092 1.07202 0.91777 1.25001 0.96956 0.97351 1.00030 1.69998 1.27261 1.38546 1.18916 0.86426 0.81417 0.81853 0.77448 1.20912 1.21518 1.21004 1.20881 0.96865 0.86836 0.90503 0.92840 0.90909 0.91256 0.74620 0.78948 0.93412 0.92055 0.93009 0.92449 0.96481 0.92950 0.93480 0.89754 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.79 37.16 0.33 -2.04 16 2 C 0.15 2.24 2.41 -67.93 -0.16 2.07 16 3 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 4 N -0.70 -10.29 5.00 -54.85 -0.27 -10.57 16 5 C 0.60 8.73 7.78 -12.48 -0.10 8.64 16 6 O -0.52 -8.36 16.58 5.29 0.09 -8.27 16 7 C -0.06 -0.81 7.29 -36.33 -0.26 -1.08 16 8 C -0.14 -1.66 10.96 -38.90 -0.43 -2.09 16 9 C 0.05 0.59 7.97 -17.03 -0.14 0.45 16 10 Cl 0.03 0.29 29.33 -51.86 -1.52 -1.23 16 11 N -0.32 -4.72 12.05 32.82 0.40 -4.32 16 12 O 0.15 2.11 11.04 15.53 0.17 2.28 16 13 C -0.12 -2.08 2.33 -90.50 -0.21 -2.29 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.10 -1.52 4.78 -26.53 -0.13 -1.65 16 16 C -0.13 -2.16 6.11 -26.45 -0.16 -2.32 16 17 C 0.14 2.83 6.50 -3.71 -0.02 2.81 16 18 N -0.59 -13.79 2.99 -172.31 -0.52 -14.31 16 19 C -0.25 -6.62 9.58 -15.06 -0.14 -6.76 16 20 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 21 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 22 N -0.90 -24.46 11.20 55.49 0.62 -23.83 16 23 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.18 3.67 4.08 -3.71 -0.02 3.65 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.14 6.32 -51.93 -0.33 0.81 16 30 H 0.07 0.89 6.46 -51.93 -0.34 0.55 16 31 H 0.42 6.47 6.79 -40.82 -0.28 6.20 16 32 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.08 1.95 4.65 -51.93 -0.24 1.70 16 41 H 0.03 0.60 6.19 -51.93 -0.32 0.28 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -28.23 348.10 -7.50 -35.73 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.15 Total: 3.85 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.53 Total: -0.54 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.23 Total: -53.03 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: 0.26 Total: -5.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.23 -7.50 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.200 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds