Wall clock time and date at job start Tue Mar 31 2020 15:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47093 * 2 1 4 4 N 1.46497 * 109.47694 * 239.99557 * 2 1 3 5 5 C 1.34778 * 119.99913 * 84.99555 * 4 2 1 6 6 O 1.21585 * 119.99923 * 0.02562 * 5 4 2 7 7 C 1.47518 * 120.00044 * 180.02562 * 5 4 2 8 8 C 1.36781 * 126.92954 * 180.02562 * 7 5 4 9 9 C 1.41407 * 103.83748 * 179.97438 * 8 7 5 10 10 Cl 1.73604 * 126.72273 * 180.02562 * 9 8 7 11 11 N 1.30224 * 106.55226 * 359.97438 * 9 8 7 12 12 O 1.20877 * 111.95807 * 359.72568 * 11 9 8 13 13 C 1.53005 * 109.47269 * 119.99243 * 2 1 3 14 14 H 1.08998 * 109.52602 * 180.02562 * 13 2 1 15 15 C 1.53039 * 109.49605 * 300.16549 * 13 2 1 16 16 C 1.53358 * 109.60526 * 181.31987 * 15 13 2 17 17 C 1.53190 * 109.15073 * 298.71334 * 16 15 13 18 18 N 1.46934 * 108.89394 * 54.57373 * 17 16 15 19 19 C 1.36935 * 120.62776 * 126.33972 * 18 17 16 20 20 H 1.08003 * 120.00334 * 331.82288 * 19 18 17 21 21 C 1.38816 * 120.00109 * 151.82327 * 19 18 17 22 22 N 1.31624 * 119.99356 * 343.07479 * 21 19 18 23 23 Si 1.86793 * 120.00395 * 163.07501 * 21 19 18 24 24 H 1.48500 * 109.47341 * 59.99642 * 23 21 19 25 25 H 1.48496 * 109.47062 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46651 * 299.99824 * 23 21 19 27 27 C 1.46927 * 118.73962 * 306.32403 * 18 17 16 28 28 H 1.08995 * 109.46724 * 60.00485 * 1 2 3 29 29 H 1.09005 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47191 * 300.00442 * 1 2 3 31 31 H 0.96995 * 120.00177 * 265.00615 * 4 2 1 32 32 H 1.08002 * 128.08462 * 359.97239 * 8 7 5 33 33 H 1.08994 * 109.46381 * 301.33378 * 15 13 2 34 34 H 1.09004 * 109.45867 * 61.31091 * 15 13 2 35 35 H 1.08993 * 109.68345 * 178.74904 * 16 15 13 36 36 H 1.09002 * 109.46954 * 58.54958 * 16 15 13 37 37 H 1.09005 * 109.58787 * 294.71926 * 17 16 15 38 38 H 1.09000 * 109.58862 * 174.43601 * 17 16 15 39 39 H 0.96997 * 119.99488 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.58430 * 173.39008 * 27 18 17 41 41 H 1.09000 * 109.58086 * 293.67640 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8583 1.1614 -2.4117 7 6 2.6385 -0.7140 -3.5616 8 6 2.8230 -0.1739 -4.8047 9 6 3.3020 -1.2576 -5.5765 10 17 3.7315 -1.2245 -7.2583 11 7 3.3590 -2.2850 -4.7784 12 8 3.0022 -2.0069 -3.6574 13 6 2.0401 -0.7211 1.2494 14 1 3.1300 -0.7212 1.2505 15 6 1.5269 -0.0024 2.4992 16 6 2.0637 -0.7036 3.7530 17 6 1.5533 -2.1478 3.7784 18 7 1.9180 -2.8037 2.5152 19 6 2.6065 -3.9873 2.5171 20 1 3.2674 -4.2264 3.3373 21 6 2.4551 -4.8801 1.4650 22 7 1.4301 -4.7656 0.6472 23 14 3.7059 -6.2437 1.2096 24 1 3.7447 -7.1118 2.4139 25 1 3.3200 -7.0542 0.0267 26 1 5.0479 -5.6487 0.9850 27 6 1.5297 -2.1655 1.2500 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2491 -1.6318 -1.1524 32 1 2.6444 0.8427 -5.1226 33 1 1.8681 1.0327 2.4888 34 1 0.4371 -0.0254 2.5096 35 1 1.7170 -0.1796 4.6436 36 1 3.1535 -0.7033 3.7310 37 1 0.4691 -2.1503 3.8916 38 1 2.0089 -2.6818 4.6123 39 1 1.3241 -5.3897 -0.0877 40 1 1.9720 -2.7097 0.4155 41 1 0.4438 -2.1717 1.1560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:54 Heat of formation + Delta-G solvation = 22.956083 kcal Electronic energy + Delta-G solvation = -26222.195368 eV Core-core repulsion = 22359.383243 eV Total energy + Delta-G solvation = -3862.812125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.40202 -41.16837 -39.48102 -38.30700 -36.69072 -35.02418 -34.77300 -33.68022 -32.52089 -31.55725 -29.61858 -27.15708 -26.22531 -24.84953 -24.63663 -23.85370 -22.34932 -21.55825 -20.43691 -19.72717 -19.19075 -18.59464 -17.52478 -17.34305 -16.75225 -16.38987 -16.14646 -15.74269 -15.56097 -15.21694 -15.05182 -14.92366 -14.63421 -14.12726 -13.93308 -13.92464 -13.69609 -13.61725 -13.23351 -12.94669 -12.75461 -12.61995 -12.36179 -12.25998 -12.11324 -11.85362 -11.73938 -11.53628 -11.43101 -11.28023 -11.11661 -11.07074 -11.00722 -10.46801 -10.21608 -8.58478 -7.83104 -5.26842 -0.52645 0.20722 0.57341 1.33357 1.47899 1.51112 1.56289 1.75860 2.06583 2.53685 2.96690 3.30280 3.47690 3.59062 3.69787 3.76523 3.98272 4.06653 4.18842 4.36392 4.43403 4.52258 4.53052 4.67047 4.80219 4.87410 4.91154 5.02692 5.09176 5.21771 5.22589 5.33562 5.41161 5.48406 5.51574 5.60683 5.72438 5.86357 6.18234 6.44244 6.60431 6.81171 7.21601 7.93059 8.43641 9.21563 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003976 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.306543 B = 7040.203904 C = 9073.925322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.097 0.903 4 N -0.699 5.699 5 C 0.610 3.390 6 O -0.532 6.532 7 C -0.074 4.074 8 C -0.124 4.124 9 C 0.050 3.950 10 Cl 0.050 6.950 11 N -0.348 5.348 12 O 0.127 5.873 13 C -0.111 4.111 14 H 0.060 0.940 15 C -0.099 4.099 16 C -0.124 4.124 17 C 0.137 3.863 18 N -0.611 5.611 19 C -0.263 4.263 20 H 0.060 0.940 21 C -0.038 4.038 22 N -0.925 5.925 23 Si 0.952 3.048 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.281 1.281 27 C 0.184 3.816 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.411 0.589 32 H 0.221 0.779 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.046 0.954 39 H 0.250 0.750 40 H 0.058 0.942 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 12.890 -8.434 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.115 0.885 4 N -0.349 5.349 5 C 0.393 3.607 6 O -0.410 6.410 7 C -0.140 4.140 8 C -0.146 4.146 9 C -0.133 4.133 10 Cl 0.078 6.922 11 N -0.050 5.050 12 O 0.052 5.948 13 C -0.132 4.132 14 H 0.079 0.921 15 C -0.137 4.137 16 C -0.163 4.163 17 C 0.011 3.989 18 N -0.335 5.335 19 C -0.394 4.394 20 H 0.078 0.922 21 C -0.234 4.234 22 N -0.571 5.571 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.207 1.207 27 C 0.059 3.941 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.237 0.763 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 1.473 12.344 -8.888 15.282 hybrid contribution 0.540 -1.120 -0.571 1.368 sum 2.012 11.224 -9.460 14.816 Atomic orbital electron populations 1.22216 0.94370 1.02283 1.02910 1.21110 0.94871 0.96523 0.82225 0.88508 1.46272 1.64290 1.15024 1.09343 1.16441 0.77914 0.85379 0.80980 1.90843 1.51720 1.14476 1.84007 1.24298 1.06285 0.84975 0.98407 1.23030 1.00072 1.02290 0.89231 1.24309 1.05493 0.91271 0.92251 1.98427 1.91153 1.98135 1.04504 1.73904 1.16078 1.23710 0.91331 1.85131 1.60030 1.26032 1.23621 1.21945 1.00015 0.97199 0.94003 0.92138 1.21502 1.00711 0.98699 0.92767 1.21946 1.00241 0.95842 0.98258 1.21099 0.96260 0.93194 0.88328 1.44289 1.65508 1.22344 1.01316 1.19401 1.17839 0.95158 1.06974 0.92245 1.25565 0.98348 0.99305 1.00200 1.70126 1.28523 1.39192 1.19226 0.85577 0.79646 0.79697 0.76947 1.20563 1.22133 1.20705 1.20699 0.95528 0.89060 0.88834 0.92489 0.93035 0.89498 0.75240 0.76265 0.90279 0.91455 0.89850 0.93030 0.96780 0.93534 0.94094 0.92394 0.97289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.79 71.98 0.63 -3.70 16 2 C 0.16 4.43 2.41 44.99 0.11 4.54 16 3 H 0.10 2.56 7.58 -2.39 -0.02 2.55 16 4 N -0.70 -20.67 5.00 -445.72 -2.23 -22.90 16 5 C 0.61 17.25 7.78 86.69 0.67 17.92 16 6 O -0.53 -16.36 16.58 -3.98 -0.07 -16.42 16 7 C -0.07 -1.93 7.29 24.38 0.18 -1.75 16 8 C -0.12 -2.65 10.96 22.71 0.25 -2.40 16 9 C 0.05 1.17 7.97 85.71 0.68 1.86 16 10 Cl 0.05 0.93 29.33 -2.72 -0.08 0.85 16 11 N -0.35 -10.07 12.05 -51.04 -0.61 -10.68 16 12 O 0.13 3.74 11.04 65.74 0.73 4.47 16 13 C -0.11 -3.59 2.33 -10.71 -0.03 -3.62 16 14 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.10 -2.71 4.78 30.73 0.15 -2.56 16 16 C -0.12 -3.69 6.11 30.78 0.19 -3.51 16 17 C 0.14 5.32 6.50 86.36 0.56 5.88 16 18 N -0.61 -28.86 2.99 -699.07 -2.09 -30.95 16 19 C -0.26 -13.97 9.58 84.03 0.81 -13.16 16 20 H 0.06 3.13 7.89 -2.91 -0.02 3.11 16 21 C -0.04 -2.03 4.92 84.86 0.42 -1.61 16 22 N -0.92 -51.58 11.20 21.65 0.24 -51.34 16 23 Si 0.95 43.92 29.59 68.60 2.03 45.95 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C 0.18 7.85 4.08 86.36 0.35 8.20 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.62 6.32 -2.38 -0.02 1.60 16 30 H 0.09 2.02 6.46 -2.39 -0.02 2.01 16 31 H 0.41 13.26 6.79 -92.71 -0.63 12.63 16 32 H 0.22 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.79 6.50 -2.38 -0.02 1.78 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 39 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.06 2.77 4.65 -2.39 -0.01 2.76 16 41 H 0.01 0.42 6.19 -2.39 -0.01 0.40 16 Total: -1.00 -60.96 348.10 3.34 -57.62 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.45 Total: 17.31 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 4.97 Total: 6.09 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.69 Total: -115.87 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.66 Total: -11.96 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -60.96 3.34 -57.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.578 kcal (2) G-P(sol) polarization free energy of solvation -60.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds