Wall clock time and date at job start Tue Mar 31 2020 15:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46865 * 2 1 4 4 N 1.46500 * 109.47339 * 240.00238 * 2 1 3 5 5 C 1.34776 * 120.00250 * 84.99671 * 4 2 1 6 6 O 1.21582 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.47518 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.36784 * 126.92802 * 179.97438 * 7 5 4 9 9 C 1.41405 * 103.84167 * 179.97438 * 8 7 5 10 10 Cl 1.73601 * 126.72463 * 179.97438 * 9 8 7 11 11 N 1.30223 * 106.54915 * 0.02562 * 9 8 7 12 12 O 1.20886 * 111.95711 * 359.71804 * 11 9 8 13 13 C 1.53000 * 109.47539 * 119.99761 * 2 1 3 14 14 H 1.09003 * 109.49496 * 59.93455 * 13 2 1 15 15 C 1.53037 * 109.52252 * 299.85787 * 13 2 1 16 16 C 1.53047 * 109.53795 * 178.66489 * 15 13 2 17 17 C 1.52754 * 109.38378 * 61.23712 * 16 15 13 18 18 N 1.46932 * 109.01099 * 305.59147 * 17 16 15 19 19 C 1.36931 * 120.62964 * 233.58902 * 18 17 16 20 20 H 1.08002 * 120.00075 * 152.35895 * 19 18 17 21 21 C 1.38813 * 120.00120 * 332.34384 * 19 18 17 22 22 N 1.31621 * 120.00027 * 342.76454 * 21 19 18 23 23 Si 1.86800 * 120.00058 * 162.47463 * 21 19 18 24 24 H 1.48507 * 109.46810 * 84.99183 * 23 21 19 25 25 H 1.48499 * 109.47476 * 204.98927 * 23 21 19 26 26 H 1.48496 * 109.47213 * 324.99479 * 23 21 19 27 27 C 1.46924 * 118.73758 * 53.30692 * 18 17 16 28 28 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46976 * 299.99978 * 1 2 3 30 30 H 1.08993 * 109.47357 * 59.99812 * 1 2 3 31 31 H 0.97006 * 119.99864 * 264.99752 * 4 2 1 32 32 H 1.08008 * 128.07892 * 359.95808 * 8 7 5 33 33 H 1.09002 * 109.46301 * 298.67870 * 15 13 2 34 34 H 1.09001 * 109.46592 * 58.64626 * 15 13 2 35 35 H 1.08995 * 109.49608 * 181.31623 * 16 15 13 36 36 H 1.09006 * 109.49576 * 301.37707 * 16 15 13 37 37 H 1.08997 * 109.51067 * 185.71031 * 17 16 15 38 38 H 1.08997 * 109.43181 * 65.42668 * 17 16 15 39 39 H 0.96998 * 119.99813 * 179.72089 * 22 21 19 40 40 H 1.09004 * 109.58803 * 66.43223 * 27 18 17 41 41 H 1.08993 * 109.58971 * 186.86030 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8573 1.1613 -2.4118 7 6 2.6383 -0.7138 -3.5617 8 6 2.8218 -0.1739 -4.8051 9 6 3.3013 -1.2574 -5.5769 10 17 3.7287 -1.2246 -7.2591 11 7 3.3583 -2.2848 -4.7788 12 8 3.0013 -2.0068 -3.6578 13 6 2.0400 -0.7212 1.2492 14 1 1.6760 -1.7486 1.2503 15 6 1.5335 0.0014 2.4996 16 6 2.0159 -0.7388 3.7493 17 6 3.5432 -0.7430 3.7781 18 7 4.0443 -1.3011 2.5146 19 6 4.9300 -2.3453 2.5158 20 1 4.9595 -3.0294 1.6806 21 6 5.7903 -2.5245 3.5904 22 7 6.0047 -1.5368 4.4336 23 14 6.6374 -4.1699 3.8444 24 1 7.8763 -4.2202 3.0271 25 1 6.9841 -4.3320 5.2792 26 1 5.7254 -5.2656 3.4287 27 6 3.5720 -0.7215 1.2498 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2491 -1.6318 -1.1526 32 1 2.6422 0.8425 -5.1231 33 1 1.9182 1.0213 2.5105 34 1 0.4438 0.0246 2.4893 35 1 1.6354 -0.2370 4.6389 36 1 1.6516 -1.7659 3.7270 37 1 3.8899 -1.3550 4.6108 38 1 3.9065 0.2779 3.8961 39 1 6.6027 -1.6634 5.1867 40 1 3.9376 0.3012 1.1574 41 1 3.9375 -1.3193 0.4149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025601658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:58 Heat of formation + Delta-G solvation = 37.720693 kcal Electronic energy + Delta-G solvation = -25755.595255 eV Core-core repulsion = 21893.423372 eV Total energy + Delta-G solvation = -3862.171883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.52245 -40.08885 -38.05510 -37.51682 -35.48861 -34.09083 -33.26130 -32.47237 -30.92764 -30.49137 -28.57014 -25.45218 -24.88206 -23.98733 -23.16016 -21.99449 -21.22636 -20.55428 -19.53870 -18.66128 -18.29844 -16.85066 -16.58504 -16.24135 -15.50069 -15.12725 -14.81073 -14.40167 -14.25097 -14.12105 -13.70184 -13.45734 -13.24672 -13.13237 -12.79210 -12.76511 -12.51642 -12.33387 -11.87487 -11.67526 -11.46478 -11.16688 -11.00107 -10.70787 -10.55722 -10.46384 -10.44836 -10.24259 -10.18570 -10.17725 -9.92790 -9.63079 -9.50258 -9.15215 -8.47600 -6.69564 -5.80635 -3.22988 0.38325 1.03755 1.42113 2.21573 2.74084 2.98793 3.36510 3.43586 3.45381 3.84518 4.30934 4.45737 4.55084 4.63589 4.87635 5.14449 5.26526 5.29396 5.35971 5.48299 5.52375 5.67845 5.73603 5.89697 5.99497 6.03243 6.19560 6.27903 6.30906 6.39371 6.57319 6.66429 6.74133 6.83204 6.92452 7.15117 7.38172 7.50822 7.65625 7.77365 7.81485 8.42581 9.19246 9.82833 10.38999 11.27679 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.003205 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.834522 B = 8733.265003 C =10548.532091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.092 0.908 4 N -0.698 5.698 5 C 0.605 3.395 6 O -0.511 6.511 7 C -0.063 4.063 8 C -0.140 4.140 9 C 0.050 3.950 10 Cl 0.031 6.969 11 N -0.325 5.325 12 O 0.141 5.859 13 C -0.112 4.112 14 H 0.074 0.926 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.168 3.832 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.410 0.590 32 H 0.194 0.806 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.018 0.982 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 2.841 -15.638 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.387 3.613 6 O -0.386 6.386 7 C -0.129 4.129 8 C -0.163 4.163 9 C -0.133 4.133 10 Cl 0.059 6.941 11 N -0.025 5.025 12 O 0.063 5.937 13 C -0.133 4.133 14 H 0.093 0.907 15 C -0.139 4.139 16 C -0.181 4.181 17 C 0.042 3.958 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.027 3.973 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.211 0.789 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.444 2.426 -15.842 19.130 hybrid contribution 0.586 -0.545 -0.214 0.828 sum -9.858 1.881 -16.056 18.935 Atomic orbital electron populations 1.22218 0.95112 1.02279 1.02515 1.21237 0.93859 0.97678 0.82974 0.88981 1.46056 1.64938 1.14731 1.09086 1.16409 0.78364 0.85654 0.80849 1.90885 1.50292 1.13885 1.83573 1.24359 1.05439 0.85041 0.98055 1.22726 1.01649 1.01572 0.90402 1.24059 1.06201 0.91557 0.91498 1.98426 1.91431 1.98201 1.06040 1.73890 1.15045 1.22649 0.90916 1.85093 1.59518 1.25525 1.23554 1.22010 0.99740 0.99379 0.92204 0.90713 1.21444 0.98797 0.99056 0.94562 1.22104 1.00882 0.99385 0.95733 1.20714 0.87498 0.97300 0.90249 1.44013 1.49811 1.38014 0.99431 1.19142 1.11543 1.02230 1.05474 0.91723 1.25021 0.97259 0.97482 0.99791 1.70040 1.38199 1.29549 1.16773 0.86350 0.79495 0.84046 0.77085 1.21322 1.21569 1.20538 1.20880 0.89742 0.96468 0.90228 0.92353 0.90848 0.92481 0.75475 0.78865 0.92487 0.93018 0.93149 0.92748 0.89531 0.96529 0.93623 0.96454 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.14 37.15 0.34 -1.41 16 2 C 0.15 1.84 2.16 -67.93 -0.15 1.69 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.70 -8.18 4.47 -54.86 -0.25 -8.43 16 5 C 0.61 7.49 7.78 -12.48 -0.10 7.39 16 6 O -0.51 -7.55 16.58 5.29 0.09 -7.46 16 7 C -0.06 -0.70 7.29 -36.33 -0.26 -0.96 16 8 C -0.14 -1.40 10.96 -38.90 -0.43 -1.83 16 9 C 0.05 0.53 7.97 -17.03 -0.14 0.40 16 10 Cl 0.03 0.28 29.33 -51.86 -1.52 -1.24 16 11 N -0.33 -3.98 12.05 32.82 0.40 -3.58 16 12 O 0.14 1.63 11.04 15.55 0.17 1.80 16 13 C -0.11 -1.69 1.97 -90.50 -0.18 -1.86 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.10 -1.51 4.86 -26.69 -0.13 -1.64 16 16 C -0.14 -2.53 6.06 -26.83 -0.16 -2.69 16 17 C 0.17 3.86 5.28 -3.93 -0.02 3.84 16 18 N -0.59 -14.13 3.00 -172.59 -0.52 -14.65 16 19 C -0.25 -6.76 9.59 -15.06 -0.14 -6.91 16 20 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -25.76 11.18 55.49 0.62 -25.14 16 23 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 2.98 5.56 -3.71 -0.02 2.95 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.74 6.41 -51.93 -0.33 0.41 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.41 4.32 8.24 -40.82 -0.34 3.98 16 32 H 0.19 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.65 6.37 -51.93 -0.33 0.32 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.97 7.43 -51.93 -0.39 0.58 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -29.89 353.53 -7.63 -37.52 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.45 Total: 0.60 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.47 Total: -1.04 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.25 Total: -51.80 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: 0.26 Total: -5.66 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.89 -7.63 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.245 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds