Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46865 * 2 1 4 4 N 1.46500 * 109.47339 * 240.00238 * 2 1 3 5 5 C 1.34776 * 120.00250 * 84.99671 * 4 2 1 6 6 O 1.21582 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.47518 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.36784 * 126.92802 * 179.97438 * 7 5 4 9 9 C 1.41405 * 103.84167 * 179.97438 * 8 7 5 10 10 Cl 1.73601 * 126.72463 * 179.97438 * 9 8 7 11 11 N 1.30223 * 106.54915 * 0.02562 * 9 8 7 12 12 O 1.20886 * 111.95711 * 359.71804 * 11 9 8 13 13 C 1.53000 * 109.47539 * 119.99761 * 2 1 3 14 14 H 1.09003 * 109.49496 * 59.93455 * 13 2 1 15 15 C 1.53037 * 109.52252 * 299.85787 * 13 2 1 16 16 C 1.53047 * 109.53795 * 178.66489 * 15 13 2 17 17 C 1.52754 * 109.38378 * 61.23712 * 16 15 13 18 18 N 1.46932 * 109.01099 * 305.59147 * 17 16 15 19 19 C 1.36931 * 120.62964 * 233.58902 * 18 17 16 20 20 H 1.08002 * 120.00075 * 152.35895 * 19 18 17 21 21 C 1.38813 * 120.00120 * 332.34384 * 19 18 17 22 22 N 1.31621 * 120.00027 * 342.76454 * 21 19 18 23 23 Si 1.86800 * 120.00058 * 162.47463 * 21 19 18 24 24 H 1.48507 * 109.46810 * 84.99183 * 23 21 19 25 25 H 1.48499 * 109.47476 * 204.98927 * 23 21 19 26 26 H 1.48496 * 109.47213 * 324.99479 * 23 21 19 27 27 C 1.46924 * 118.73758 * 53.30692 * 18 17 16 28 28 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46976 * 299.99978 * 1 2 3 30 30 H 1.08993 * 109.47357 * 59.99812 * 1 2 3 31 31 H 0.97006 * 119.99864 * 264.99752 * 4 2 1 32 32 H 1.08008 * 128.07892 * 359.95808 * 8 7 5 33 33 H 1.09002 * 109.46301 * 298.67870 * 15 13 2 34 34 H 1.09001 * 109.46592 * 58.64626 * 15 13 2 35 35 H 1.08995 * 109.49608 * 181.31623 * 16 15 13 36 36 H 1.09006 * 109.49576 * 301.37707 * 16 15 13 37 37 H 1.08997 * 109.51067 * 185.71031 * 17 16 15 38 38 H 1.08997 * 109.43181 * 65.42668 * 17 16 15 39 39 H 0.96998 * 119.99813 * 179.72089 * 22 21 19 40 40 H 1.09004 * 109.58803 * 66.43223 * 27 18 17 41 41 H 1.08993 * 109.58971 * 186.86030 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8573 1.1613 -2.4118 7 6 2.6383 -0.7138 -3.5617 8 6 2.8218 -0.1739 -4.8051 9 6 3.3013 -1.2574 -5.5769 10 17 3.7287 -1.2246 -7.2591 11 7 3.3583 -2.2848 -4.7788 12 8 3.0013 -2.0068 -3.6578 13 6 2.0400 -0.7212 1.2492 14 1 1.6760 -1.7486 1.2503 15 6 1.5335 0.0014 2.4996 16 6 2.0159 -0.7388 3.7493 17 6 3.5432 -0.7430 3.7781 18 7 4.0443 -1.3011 2.5146 19 6 4.9300 -2.3453 2.5158 20 1 4.9595 -3.0294 1.6806 21 6 5.7903 -2.5245 3.5904 22 7 6.0047 -1.5368 4.4336 23 14 6.6374 -4.1699 3.8444 24 1 7.8763 -4.2202 3.0271 25 1 6.9841 -4.3320 5.2792 26 1 5.7254 -5.2656 3.4287 27 6 3.5720 -0.7215 1.2498 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.2491 -1.6318 -1.1526 32 1 2.6422 0.8425 -5.1231 33 1 1.9182 1.0213 2.5105 34 1 0.4438 0.0246 2.4893 35 1 1.6354 -0.2370 4.6389 36 1 1.6516 -1.7659 3.7270 37 1 3.8899 -1.3550 4.6108 38 1 3.9065 0.2779 3.8961 39 1 6.6027 -1.6634 5.1867 40 1 3.9376 0.3012 1.1574 41 1 3.9375 -1.3193 0.4149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = 19.559109 kcal Electronic energy + Delta-G solvation = -25756.382800 eV Core-core repulsion = 21893.423372 eV Total energy + Delta-G solvation = -3862.959428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.38993 -41.14090 -39.44042 -38.28410 -36.83080 -35.01413 -34.69135 -33.57019 -32.43807 -31.96893 -29.87052 -27.15229 -26.03043 -24.84529 -24.41431 -23.58034 -22.36937 -21.64539 -20.91224 -19.77049 -19.18277 -18.64415 -17.51127 -17.35020 -16.83709 -16.38225 -16.09171 -15.83449 -15.42304 -15.21231 -14.93840 -14.91940 -14.65125 -14.11302 -14.00039 -13.90196 -13.72222 -13.60997 -13.25085 -12.99147 -12.76168 -12.60131 -12.27023 -12.25562 -12.18588 -11.96288 -11.74131 -11.60138 -11.44771 -11.26042 -11.16793 -11.06657 -11.01248 -10.50683 -10.20955 -8.65219 -7.85205 -5.30035 -0.49979 0.24240 0.58554 1.31572 1.47496 1.49156 1.58002 1.78827 2.06759 2.52422 2.99121 3.29484 3.48681 3.55567 3.70018 3.78150 3.96282 4.03066 4.09302 4.39537 4.47540 4.53126 4.53726 4.68839 4.81197 4.86390 4.92237 4.98777 5.08118 5.14999 5.22913 5.32851 5.36868 5.45199 5.53033 5.60769 5.70404 5.82843 6.19740 6.41064 6.63811 6.85929 7.17415 7.89556 8.40361 9.20719 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.003205 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.834522 B = 8733.265003 C =10548.532091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.079 0.921 4 N -0.695 5.695 5 C 0.611 3.389 6 O -0.536 6.536 7 C -0.071 4.071 8 C -0.128 4.128 9 C 0.047 3.953 10 Cl 0.046 6.954 11 N -0.345 5.345 12 O 0.138 5.862 13 C -0.096 4.096 14 H 0.080 0.920 15 C -0.097 4.097 16 C -0.131 4.131 17 C 0.172 3.828 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.069 0.931 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.152 3.848 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.416 0.584 32 H 0.215 0.785 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.050 0.950 38 H -0.010 1.010 39 H 0.248 0.752 40 H 0.002 0.998 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 2.451 -16.995 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.097 0.903 4 N -0.345 5.345 5 C 0.394 3.606 6 O -0.413 6.413 7 C -0.137 4.137 8 C -0.151 4.151 9 C -0.135 4.135 10 Cl 0.074 6.926 11 N -0.045 5.045 12 O 0.061 5.939 13 C -0.117 4.117 14 H 0.099 0.901 15 C -0.135 4.135 16 C -0.170 4.170 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.026 3.974 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.008 0.992 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.272 2.022 -17.223 21.245 hybrid contribution 1.193 -0.384 0.126 1.259 sum -11.079 1.638 -17.097 20.439 Atomic orbital electron populations 1.22162 0.92893 1.03248 1.03075 1.21080 0.95379 0.96494 0.82005 0.90278 1.46022 1.64669 1.15010 1.08802 1.16415 0.77832 0.85281 0.81092 1.90874 1.51520 1.14897 1.84040 1.24185 1.06291 0.85152 0.98027 1.23019 1.00190 1.02214 0.89690 1.24259 1.05713 0.91378 0.92196 1.98434 1.91253 1.98148 1.04737 1.73870 1.15848 1.23495 0.91335 1.85074 1.59740 1.25655 1.23454 1.21777 0.95977 1.00206 0.93709 0.90122 1.21445 1.01061 0.98200 0.92766 1.21933 0.96523 1.00221 0.98290 1.20556 0.91120 0.94746 0.88977 1.44287 1.49832 1.37928 1.01132 1.19514 1.11361 1.02883 1.05311 0.91348 1.25761 0.98527 1.00414 0.99994 1.70199 1.39322 1.31348 1.17332 0.85361 0.78475 0.80585 0.76430 1.21267 1.22085 1.19408 1.21014 0.92941 0.95094 0.88356 0.91152 0.89663 0.92570 0.74725 0.76829 0.92827 0.89140 0.91247 0.92730 0.93154 0.99209 0.94250 0.98054 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.14 71.98 0.66 -2.17 16 2 C 0.15 3.56 2.16 44.99 0.10 3.66 16 3 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16 4 N -0.69 -15.18 4.47 -445.74 -1.99 -17.17 16 5 C 0.61 14.29 7.78 86.69 0.67 14.97 16 6 O -0.54 -15.14 16.58 -3.97 -0.07 -15.20 16 7 C -0.07 -1.48 7.29 24.38 0.18 -1.30 16 8 C -0.13 -2.35 10.96 22.71 0.25 -2.10 16 9 C 0.05 0.94 7.97 85.71 0.68 1.63 16 10 Cl 0.05 0.76 29.33 -2.72 -0.08 0.68 16 11 N -0.34 -8.05 12.05 -51.04 -0.61 -8.66 16 12 O 0.14 3.04 11.04 65.84 0.73 3.77 16 13 C -0.10 -2.70 1.97 -10.72 -0.02 -2.72 16 14 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.10 -2.67 4.86 30.62 0.15 -2.52 16 16 C -0.13 -4.48 6.06 30.53 0.19 -4.30 16 17 C 0.17 8.07 5.28 86.22 0.46 8.52 16 18 N -0.61 -29.51 3.00 -699.94 -2.10 -31.61 16 19 C -0.26 -14.00 9.59 84.03 0.81 -13.20 16 20 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 21 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 22 N -0.94 -55.31 11.18 21.65 0.24 -55.07 16 23 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 27 C 0.15 5.84 5.56 86.36 0.48 6.32 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.36 6.41 -2.39 -0.02 1.34 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.42 8.10 8.24 -92.70 -0.76 7.34 16 32 H 0.21 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.88 6.37 -2.39 -0.02 1.86 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.05 2.71 6.03 -2.39 -0.01 2.70 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.05 1.98 7.43 -2.39 -0.02 1.96 16 Total: -1.00 -65.82 353.53 3.46 -62.36 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.30 Total: 10.06 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.01 Total: 4.34 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.47 Total: -112.52 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.66 Total: -11.43 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.08 Total: 0.68 kcal Total: -65.82 3.46 -62.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds