Wall clock time and date at job start Tue Mar 31 2020 14:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 H 1.09003 * 109.50069 * 54.92976 * 3 2 1 5 5 C 1.53188 * 109.52433 * 294.85062 * 3 2 1 6 6 N 1.46930 * 108.77716 * 185.39688 * 5 3 2 7 7 C 1.34779 * 120.63395 * 233.62868 * 6 5 3 8 8 O 1.21579 * 120.00254 * 173.04432 * 7 6 5 9 9 C 1.47527 * 119.99695 * 353.04387 * 7 6 5 10 10 C 1.36777 * 126.92686 * 172.74919 * 9 7 6 11 11 C 1.41413 * 103.84073 * 179.97438 * 10 9 7 12 12 Cl 1.73591 * 126.72565 * 180.02562 * 11 10 9 13 13 N 1.30229 * 106.54551 * 0.02562 * 11 10 9 14 14 O 1.20883 * 111.96010 * 359.72035 * 13 11 10 15 15 C 1.46990 * 118.75190 * 53.60929 * 6 5 3 16 16 C 1.53192 * 108.74227 * 306.40711 * 15 6 5 17 17 C 1.53040 * 109.49892 * 174.99619 * 3 2 1 18 18 H 1.08997 * 109.44975 * 61.33486 * 17 3 2 19 19 N 1.46501 * 109.46124 * 301.36851 * 17 3 2 20 20 C 1.36931 * 120.00031 * 154.92715 * 19 17 3 21 21 H 1.07997 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99861 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47457 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47335 * 120.00069 * 24 22 20 27 27 H 1.48506 * 109.47424 * 240.00129 * 24 22 20 28 28 H 1.08994 * 109.47768 * 300.00105 * 1 2 3 29 29 H 1.09001 * 109.46813 * 60.00786 * 1 2 3 30 30 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47768 * 239.99894 * 2 1 3 32 32 H 1.09001 * 109.46813 * 119.99214 * 2 1 3 33 33 H 1.08998 * 109.59005 * 305.18457 * 5 3 2 34 34 H 1.08997 * 109.59103 * 65.46954 * 5 3 2 35 35 H 1.08002 * 128.07996 * 359.97438 * 10 9 7 36 36 H 1.09007 * 109.62820 * 186.61569 * 15 6 5 37 37 H 1.09007 * 109.58585 * 66.17263 * 15 6 5 38 38 H 1.08999 * 109.49396 * 294.66050 * 16 15 6 39 39 H 1.08997 * 109.49990 * 174.58903 * 16 15 6 40 40 H 0.97000 * 119.99787 * 334.93038 * 19 17 3 41 41 H 0.97000 * 119.99473 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 0.8410 5 6 1.6385 2.1274 -1.3101 6 7 2.2450 3.4652 -1.3496 7 6 1.4855 4.5574 -1.5656 8 8 1.9746 5.6664 -1.4709 9 6 0.0606 4.4072 -1.9171 10 6 -0.8675 5.4055 -2.0306 11 6 -2.0556 4.7244 -2.3829 12 17 -3.6119 5.4355 -2.6756 13 7 -1.7535 3.4592 -2.4446 14 8 -0.5874 3.2603 -2.1958 15 6 3.6957 3.5900 -1.1485 16 6 4.0735 2.8883 0.1597 17 6 3.5652 1.4451 0.1258 18 1 4.0007 0.9267 -0.7283 19 7 3.9541 0.7615 1.3618 20 6 5.1917 0.1846 1.4648 21 1 5.8812 0.2339 0.6350 22 6 5.5600 -0.4636 2.6358 23 7 4.7195 -0.5240 3.6468 24 14 7.2486 -1.2500 2.7765 25 1 7.9975 -1.0443 1.5108 26 1 7.9931 -0.6261 3.8998 27 1 7.0973 -2.7053 3.0306 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.9965 1.5389 -2.1548 34 1 0.5532 2.2145 -1.3594 35 1 -0.7259 6.4663 -1.8852 36 1 3.9679 4.6439 -1.0897 37 1 4.2216 3.1206 -1.9800 38 1 3.6190 3.4145 0.9991 39 1 5.1575 2.8896 0.2734 40 1 3.3350 0.7176 2.1072 41 1 4.9768 -0.9773 4.4648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037954657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:59 Heat of formation + Delta-G solvation = 40.568298 kcal Electronic energy + Delta-G solvation = -26248.564508 eV Core-core repulsion = 22386.516107 eV Total energy + Delta-G solvation = -3862.048402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.56739 -40.29679 -38.09990 -37.52828 -34.92552 -34.06938 -33.83006 -32.79302 -31.65267 -29.70104 -28.71165 -25.69672 -24.56595 -23.98782 -23.68813 -22.48127 -21.23647 -20.41747 -19.70381 -18.38994 -18.17314 -17.07285 -16.90829 -16.35579 -15.39035 -15.23502 -15.00674 -14.38963 -14.27637 -14.05861 -13.74572 -13.46761 -13.28301 -13.21549 -13.13351 -12.81363 -12.66717 -12.22037 -11.93959 -11.63732 -11.47526 -11.38138 -10.96624 -10.88795 -10.80311 -10.57877 -10.47481 -10.32585 -10.28000 -10.19332 -10.15317 -9.77642 -9.66485 -8.95102 -8.72887 -7.00915 -5.81486 -3.10347 0.36163 1.02201 1.40742 2.15911 2.66765 2.90477 3.40021 3.46050 3.48134 3.77142 4.22947 4.30890 4.54014 4.57788 4.93154 5.04896 5.16975 5.25221 5.33632 5.43782 5.48388 5.54408 5.57858 5.68642 5.70230 5.93246 6.00743 6.05532 6.14077 6.30484 6.33652 6.35106 6.42348 6.60533 6.77719 6.85121 6.98774 7.10275 7.43980 7.66082 7.75649 8.36525 9.48417 10.04727 10.39452 11.40917 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002918 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.761636 B = 9591.781306 C =10372.330598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.072 0.928 5 C 0.102 3.898 6 N -0.587 5.587 7 C 0.600 3.400 8 O -0.514 6.514 9 C -0.060 4.060 10 C -0.141 4.141 11 C 0.053 3.947 12 Cl 0.031 6.969 13 N -0.330 5.330 14 O 0.137 5.863 15 C 0.112 3.888 16 C -0.152 4.152 17 C 0.183 3.817 18 H 0.050 0.950 19 N -0.720 5.720 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 9.772 -13.449 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.090 0.910 5 C -0.021 4.021 6 N -0.318 5.318 7 C 0.384 3.616 8 O -0.391 6.391 9 C -0.125 4.125 10 C -0.164 4.164 11 C -0.130 4.130 12 Cl 0.058 6.942 13 N -0.033 5.033 14 O 0.063 5.937 15 C -0.009 4.009 16 C -0.193 4.193 17 C 0.072 3.928 18 H 0.068 0.932 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.211 0.789 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.218 0.782 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.556 9.248 -13.718 21.389 hybrid contribution 0.662 0.337 0.581 0.943 sum -12.895 9.585 -13.136 20.754 Atomic orbital electron populations 1.21862 0.96758 1.01342 1.01201 1.21466 0.94355 0.95398 1.03818 1.21795 0.98158 0.96480 0.96001 0.90975 1.22352 0.98502 0.81772 0.99486 1.48145 1.09194 1.06496 1.67996 1.16567 0.81522 0.85110 0.78380 1.90869 1.70949 1.24580 1.52703 1.24321 0.96368 0.85628 1.06222 1.22729 0.88773 1.02484 1.02383 1.24032 0.91687 0.90269 1.07017 1.98425 1.20996 1.80380 1.94352 1.73851 0.96089 1.17506 1.15831 1.85250 1.14548 1.30953 1.62976 1.21914 0.77119 1.02691 0.99203 1.22715 1.02553 0.98957 0.95096 1.20205 0.90426 0.90692 0.91455 0.93164 1.42400 1.16565 1.64386 1.12639 1.19247 0.91775 1.27259 0.98666 0.91128 1.24729 0.98136 1.01511 0.96434 1.69664 1.35165 1.48299 1.04782 0.86161 0.84000 0.78874 0.77383 1.20572 1.21941 1.21926 0.93053 0.93175 0.92960 0.92177 0.89538 0.90263 0.88884 0.78891 0.89153 0.90868 0.92005 0.90177 0.78174 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C -0.10 -1.52 1.92 -90.50 -0.17 -1.70 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 5 C 0.10 1.22 5.04 -3.71 -0.02 1.20 16 6 N -0.59 -7.54 2.97 -173.94 -0.52 -8.06 16 7 C 0.60 7.93 7.68 -12.47 -0.10 7.83 16 8 O -0.51 -7.96 16.35 5.30 0.09 -7.87 16 9 C -0.06 -0.69 6.89 -36.33 -0.25 -0.94 16 10 C -0.14 -1.41 10.97 -38.90 -0.43 -1.84 16 11 C 0.05 0.55 7.97 -17.02 -0.14 0.42 16 12 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 13 N -0.33 -3.86 12.05 32.82 0.40 -3.47 16 14 O 0.14 1.55 7.94 15.54 0.12 1.68 16 15 C 0.11 1.48 6.45 -3.68 -0.02 1.46 16 16 C -0.15 -2.45 5.66 -26.61 -0.15 -2.60 16 17 C 0.18 3.20 2.19 -67.89 -0.15 3.05 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 N -0.72 -16.42 4.33 -53.38 -0.23 -16.65 16 20 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 24 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.55 6.70 -51.93 -0.35 0.21 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.55 7.22 -51.93 -0.37 1.18 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.05 3.00 -52.50 -0.16 0.89 16 35 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 37 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.38 9.51 7.51 -40.82 -0.31 9.21 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -29.01 350.92 -7.45 -36.45 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.32 Total: 6.74 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.45 Total: -3.17 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.37 Total: -54.47 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.21 Total: -6.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.01 -7.45 -36.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.021 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds