Wall clock time and date at job start Tue Mar 31 2020 14:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 H 1.09003 * 109.50069 * 54.92976 * 3 2 1 5 5 C 1.53188 * 109.52433 * 294.85062 * 3 2 1 6 6 N 1.46930 * 108.77716 * 185.39688 * 5 3 2 7 7 C 1.34779 * 120.63395 * 233.62868 * 6 5 3 8 8 O 1.21579 * 120.00254 * 173.04432 * 7 6 5 9 9 C 1.47527 * 119.99695 * 353.04387 * 7 6 5 10 10 C 1.36777 * 126.92686 * 172.74919 * 9 7 6 11 11 C 1.41413 * 103.84073 * 179.97438 * 10 9 7 12 12 Cl 1.73591 * 126.72565 * 180.02562 * 11 10 9 13 13 N 1.30229 * 106.54551 * 0.02562 * 11 10 9 14 14 O 1.20883 * 111.96010 * 359.72035 * 13 11 10 15 15 C 1.46990 * 118.75190 * 53.60929 * 6 5 3 16 16 C 1.53192 * 108.74227 * 306.40711 * 15 6 5 17 17 C 1.53040 * 109.49892 * 174.99619 * 3 2 1 18 18 H 1.08997 * 109.44975 * 61.33486 * 17 3 2 19 19 N 1.46501 * 109.46124 * 301.36851 * 17 3 2 20 20 C 1.36931 * 120.00031 * 154.92715 * 19 17 3 21 21 H 1.07997 * 120.00072 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99861 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47457 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47335 * 120.00069 * 24 22 20 27 27 H 1.48506 * 109.47424 * 240.00129 * 24 22 20 28 28 H 1.08994 * 109.47768 * 300.00105 * 1 2 3 29 29 H 1.09001 * 109.46813 * 60.00786 * 1 2 3 30 30 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47768 * 239.99894 * 2 1 3 32 32 H 1.09001 * 109.46813 * 119.99214 * 2 1 3 33 33 H 1.08998 * 109.59005 * 305.18457 * 5 3 2 34 34 H 1.08997 * 109.59103 * 65.46954 * 5 3 2 35 35 H 1.08002 * 128.07996 * 359.97438 * 10 9 7 36 36 H 1.09007 * 109.62820 * 186.61569 * 15 6 5 37 37 H 1.09007 * 109.58585 * 66.17263 * 15 6 5 38 38 H 1.08999 * 109.49396 * 294.66050 * 16 15 6 39 39 H 1.08997 * 109.49990 * 174.58903 * 16 15 6 40 40 H 0.97000 * 119.99787 * 334.93038 * 19 17 3 41 41 H 0.97000 * 119.99473 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9824 0.8410 5 6 1.6385 2.1274 -1.3101 6 7 2.2450 3.4652 -1.3496 7 6 1.4855 4.5574 -1.5656 8 8 1.9746 5.6664 -1.4709 9 6 0.0606 4.4072 -1.9171 10 6 -0.8675 5.4055 -2.0306 11 6 -2.0556 4.7244 -2.3829 12 17 -3.6119 5.4355 -2.6756 13 7 -1.7535 3.4592 -2.4446 14 8 -0.5874 3.2603 -2.1958 15 6 3.6957 3.5900 -1.1485 16 6 4.0735 2.8883 0.1597 17 6 3.5652 1.4451 0.1258 18 1 4.0007 0.9267 -0.7283 19 7 3.9541 0.7615 1.3618 20 6 5.1917 0.1846 1.4648 21 1 5.8812 0.2339 0.6350 22 6 5.5600 -0.4636 2.6358 23 7 4.7195 -0.5240 3.6468 24 14 7.2486 -1.2500 2.7765 25 1 7.9975 -1.0443 1.5108 26 1 7.9931 -0.6261 3.8998 27 1 7.0973 -2.7053 3.0306 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.9965 1.5389 -2.1548 34 1 0.5532 2.2145 -1.3594 35 1 -0.7259 6.4663 -1.8852 36 1 3.9679 4.6439 -1.0897 37 1 4.2216 3.1206 -1.9800 38 1 3.6190 3.4145 0.9991 39 1 5.1575 2.8896 0.2734 40 1 3.3350 0.7176 2.1072 41 1 4.9768 -0.9773 4.4648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037954657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:58 Heat of formation + Delta-G solvation = 23.539307 kcal Electronic energy + Delta-G solvation = -26249.302941 eV Core-core repulsion = 22386.516107 eV Total energy + Delta-G solvation = -3862.786834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.41364 -41.40277 -39.33078 -38.26436 -36.32757 -35.16593 -34.93890 -34.02305 -33.04245 -31.18364 -29.95681 -27.03849 -25.73431 -25.19578 -24.77279 -23.76796 -22.37220 -21.54037 -20.96715 -19.44776 -19.21911 -18.78804 -17.84027 -17.40091 -16.72331 -16.34923 -16.27163 -15.65299 -15.53152 -15.36342 -14.99247 -14.69934 -14.60739 -14.46361 -14.00508 -13.89676 -13.59328 -13.55026 -13.12672 -13.04137 -12.85723 -12.64224 -12.51783 -12.23672 -12.11032 -12.02344 -11.85554 -11.66435 -11.51474 -11.42161 -11.26825 -11.09038 -10.99318 -10.82873 -9.84048 -8.93760 -7.89164 -5.15958 -0.52364 0.25933 0.59280 1.22905 1.49663 1.50701 1.59508 1.67166 1.93714 2.59706 2.90647 3.32468 3.44502 3.48096 3.74010 3.76692 3.81928 3.99335 4.09916 4.31011 4.36179 4.39369 4.50643 4.52997 4.64742 4.75119 4.82279 4.82899 4.92239 4.97344 5.11298 5.14529 5.28904 5.40467 5.48076 5.54946 5.60975 5.65194 6.05567 6.32788 6.54153 6.76809 7.39702 8.16151 8.38419 9.34495 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002918 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.761636 B = 9591.781306 C =10372.330598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.095 4.095 4 H 0.057 0.943 5 C 0.110 3.890 6 N -0.589 5.589 7 C 0.605 3.395 8 O -0.539 6.539 9 C -0.072 4.072 10 C -0.126 4.126 11 C 0.051 3.949 12 Cl 0.046 6.954 13 N -0.342 5.342 14 O 0.137 5.863 15 C 0.122 3.878 16 C -0.142 4.142 17 C 0.178 3.822 18 H 0.054 0.946 19 N -0.730 5.730 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.964 3.036 25 H -0.264 1.264 26 H -0.300 1.300 27 H -0.298 1.298 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.213 0.787 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.371 0.629 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 10.479 -15.750 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.115 4.115 4 H 0.075 0.925 5 C -0.013 4.013 6 N -0.319 5.319 7 C 0.390 3.610 8 O -0.418 6.418 9 C -0.137 4.137 10 C -0.149 4.149 11 C -0.132 4.132 12 Cl 0.074 6.926 13 N -0.045 5.045 14 O 0.063 5.937 15 C 0.000 4.000 16 C -0.183 4.183 17 C 0.069 3.931 18 H 0.072 0.928 19 N -0.369 5.369 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.228 1.228 27 H -0.225 1.225 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.230 0.770 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.203 0.797 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.332 9.973 -16.080 23.736 hybrid contribution 0.807 0.186 1.234 1.486 sum -13.525 10.159 -14.846 22.506 Atomic orbital electron populations 1.21801 0.94769 1.02052 1.01861 1.21359 0.96061 0.94838 1.02262 1.21650 0.95745 0.96847 0.97229 0.92468 1.22339 0.99316 0.81323 0.98303 1.48149 1.09029 1.06808 1.67909 1.16647 0.82027 0.84616 0.77694 1.90858 1.71681 1.25401 1.53820 1.24032 0.95783 0.86254 1.07657 1.23014 0.88096 1.03188 1.00573 1.24201 0.92517 0.89997 1.06505 1.98437 1.19902 1.80032 1.94194 1.73833 0.96128 1.18232 1.16279 1.85203 1.14480 1.30854 1.63180 1.21797 0.77725 1.02511 0.97997 1.22499 1.01449 0.97957 0.96394 1.20450 0.92609 0.90797 0.89204 0.92750 1.42585 1.15502 1.64797 1.14013 1.19622 0.92618 1.25304 0.98266 0.90377 1.25448 1.01382 1.03372 0.96671 1.69816 1.36921 1.50184 1.05211 0.85196 0.80472 0.77366 0.77493 1.18862 1.22751 1.22546 0.93633 0.91193 0.92300 0.91207 0.93544 0.88102 0.87623 0.76980 0.89060 0.88548 0.93910 0.91472 0.79711 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.67 71.98 0.70 -2.73 16 2 C -0.11 -3.05 5.31 30.59 0.16 -2.89 16 3 C -0.09 -2.69 1.92 -10.72 -0.02 -2.71 16 4 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.11 2.38 5.04 86.36 0.44 2.81 16 6 N -0.59 -13.91 2.97 -822.50 -2.45 -16.36 16 7 C 0.60 14.80 7.68 86.69 0.67 15.46 16 8 O -0.54 -15.82 16.35 -3.96 -0.06 -15.88 16 9 C -0.07 -1.48 6.89 24.38 0.17 -1.32 16 10 C -0.13 -2.21 10.97 22.71 0.25 -1.96 16 11 C 0.05 0.94 7.97 85.71 0.68 1.62 16 12 Cl 0.05 0.70 29.33 -2.72 -0.08 0.62 16 13 N -0.34 -7.17 12.05 -51.03 -0.61 -7.79 16 14 O 0.14 2.77 7.94 65.79 0.52 3.29 16 15 C 0.12 2.99 6.45 86.35 0.56 3.55 16 16 C -0.14 -4.53 5.66 30.67 0.17 -4.36 16 17 C 0.18 6.16 2.19 45.02 0.10 6.26 16 18 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 19 N -0.73 -33.96 4.33 -322.81 -1.40 -35.35 16 20 C -0.23 -11.76 9.93 84.04 0.83 -10.93 16 21 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 24 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.35 6.70 -2.39 -0.02 1.34 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.71 7.22 -2.39 -0.02 1.69 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.10 3.00 -11.41 -0.03 2.07 16 35 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.09 2.30 7.00 -2.38 -0.02 2.28 16 37 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.37 19.10 7.51 -92.71 -0.70 18.40 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -63.07 350.92 3.75 -59.32 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.35 Total: 23.81 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.17 Total: -0.99 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -4.17 Total: -117.25 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.46 Total: -12.59 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -63.07 3.75 -59.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.861 kcal (2) G-P(sol) polarization free energy of solvation -63.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds