Wall clock time and date at job start Tue Mar 31 2020 14:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 H 1.09003 * 109.52275 * 305.08296 * 3 2 1 5 5 C 1.53188 * 109.49512 * 65.16127 * 3 2 1 6 6 N 1.46926 * 108.77513 * 174.58553 * 5 3 2 7 7 C 1.34779 * 120.63358 * 126.36979 * 6 5 3 8 8 O 1.21581 * 119.99901 * 353.03768 * 7 6 5 9 9 C 1.47519 * 120.00040 * 173.03719 * 7 6 5 10 10 C 1.36783 * 126.92482 * 172.73434 * 9 7 6 11 11 C 1.41416 * 103.83434 * 179.97438 * 10 9 7 12 12 Cl 1.73601 * 126.72378 * 180.02562 * 11 10 9 13 13 N 1.30220 * 106.55344 * 0.02562 * 11 10 9 14 14 O 1.20890 * 111.95516 * 359.71938 * 13 11 10 15 15 C 1.46929 * 118.73984 * 306.39313 * 6 5 3 16 16 C 1.53197 * 108.76237 * 53.61342 * 15 6 5 17 17 C 1.53035 * 109.31428 * 305.34468 * 16 15 6 18 18 H 1.08998 * 109.46502 * 301.37374 * 17 16 15 19 19 N 1.46501 * 109.46209 * 181.39710 * 17 16 15 20 20 C 1.36933 * 119.99740 * 84.97518 * 19 17 16 21 21 H 1.08004 * 120.00026 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00260 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99454 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00316 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47394 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47180 * 300.00389 * 24 22 20 27 27 H 1.48502 * 109.47016 * 60.00306 * 24 22 20 28 28 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46997 * 300.00084 * 1 2 3 30 30 H 1.08996 * 109.47281 * 59.99761 * 1 2 3 31 31 H 1.08994 * 109.46952 * 239.99969 * 2 1 3 32 32 H 1.08998 * 109.47012 * 119.99774 * 2 1 3 33 33 H 1.08997 * 109.59126 * 294.37140 * 5 3 2 34 34 H 1.09006 * 109.58688 * 54.65905 * 5 3 2 35 35 H 1.07999 * 128.08457 * 359.96719 * 10 9 7 36 36 H 1.08993 * 109.59066 * 173.39120 * 15 6 5 37 37 H 1.08996 * 109.58577 * 293.67729 * 15 6 5 38 38 H 1.09004 * 109.48684 * 185.40110 * 16 15 6 39 39 H 1.08999 * 109.50750 * 65.30824 * 16 15 6 40 40 H 0.97000 * 120.00108 * 264.97686 * 19 17 16 41 41 H 0.96996 * 119.99428 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2450 3.4644 1.3507 7 6 1.4856 4.5565 1.5673 8 8 0.2744 4.4570 1.6055 9 6 2.1238 5.8727 1.7581 10 6 1.4965 7.0849 1.8484 11 6 2.5578 8.0026 2.0253 12 17 2.4224 9.7237 2.2076 13 7 3.6566 7.3037 2.0248 14 8 3.4409 6.1226 1.8836 15 6 3.6952 3.5889 1.1499 16 6 4.0733 2.8883 -0.1590 17 6 3.5652 1.4451 -0.1257 18 1 4.0008 0.9263 0.7281 19 7 3.9541 0.7621 -1.3621 20 6 5.1920 0.1859 -1.4657 21 1 5.8818 0.2354 -0.6361 22 6 5.5604 -0.4617 -2.6369 23 7 4.7199 -0.5215 -3.6481 24 14 7.2493 -1.2471 -2.7785 25 1 7.3952 -1.8691 -4.1190 26 1 8.2950 -0.2081 -2.5988 27 1 7.4005 -2.2880 -1.7302 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5532 2.2161 1.3585 34 1 1.9943 1.5363 2.1549 35 1 0.4380 7.2926 1.7965 36 1 3.9669 4.6428 1.0919 37 1 4.2208 3.1213 1.9824 38 1 5.1574 2.8898 -0.2722 39 1 3.6187 3.4148 -0.9982 40 1 3.3348 0.7181 -2.1073 41 1 4.9775 -0.9737 -4.4666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037954658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:02 Heat of formation + Delta-G solvation = 40.621247 kcal Electronic energy + Delta-G solvation = -26027.701310 eV Core-core repulsion = 22165.655204 eV Total energy + Delta-G solvation = -3862.046106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.54907 -40.30588 -38.03133 -37.51633 -35.08440 -34.04803 -33.87334 -32.42556 -31.80483 -29.62066 -28.84698 -25.85189 -24.23775 -23.93629 -23.70798 -22.56004 -21.05984 -20.78388 -19.63256 -18.36934 -17.96426 -17.14417 -16.89474 -16.38168 -15.46075 -15.21360 -14.96182 -14.35775 -14.20414 -14.01276 -13.79502 -13.45614 -13.30950 -13.16820 -13.13003 -12.79127 -12.76454 -12.20060 -11.86501 -11.66499 -11.46981 -11.37330 -10.96608 -10.89438 -10.75889 -10.56310 -10.45858 -10.30622 -10.27237 -10.21389 -10.15481 -9.77359 -9.66313 -8.94315 -8.72572 -7.01084 -5.81046 -3.10125 0.37576 1.03549 1.42237 2.17274 2.67346 2.91315 3.40879 3.45945 3.46704 3.78874 4.25145 4.32383 4.54306 4.59210 4.98413 5.11357 5.14742 5.26298 5.27903 5.38359 5.52525 5.55248 5.58467 5.65410 5.77153 5.92717 6.03553 6.08432 6.21787 6.26357 6.30410 6.38601 6.44477 6.59140 6.76019 6.88586 6.98265 7.10118 7.45636 7.65149 7.75981 8.37014 9.48665 10.05041 10.39804 11.41195 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003093 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.808952 B = 9051.917398 C =10487.315099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.587 5.587 7 C 0.601 3.399 8 O -0.515 6.515 9 C -0.059 4.059 10 C -0.141 4.141 11 C 0.053 3.947 12 Cl 0.030 6.970 13 N -0.331 5.331 14 O 0.138 5.862 15 C 0.096 3.904 16 C -0.151 4.151 17 C 0.183 3.817 18 H 0.050 0.950 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.292 1.292 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 13.628 12.946 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.091 0.909 5 C -0.003 4.003 6 N -0.318 5.318 7 C 0.385 3.615 8 O -0.392 6.392 9 C -0.125 4.125 10 C -0.164 4.164 11 C -0.130 4.130 12 Cl 0.058 6.942 13 N -0.033 5.033 14 O 0.064 5.936 15 C -0.027 4.027 16 C -0.192 4.192 17 C 0.072 3.928 18 H 0.068 0.932 19 N -0.359 5.359 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.211 0.789 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.876 13.950 13.103 20.336 hybrid contribution 0.155 -0.030 -0.517 0.541 sum -6.721 13.920 12.586 19.933 Atomic orbital electron populations 1.21853 0.96745 1.01146 1.01323 1.21453 0.94402 0.95450 1.03666 1.21807 0.97845 0.96454 0.96442 0.90925 1.21936 0.99566 0.80193 0.98603 1.48124 1.09234 1.06544 1.67923 1.16560 0.85923 0.80803 0.78236 1.90865 1.12171 1.83907 1.52272 1.24289 0.83552 0.97607 1.07021 1.22724 1.01946 0.88782 1.02937 1.24032 0.90517 0.90673 1.07815 1.98425 1.97471 1.02388 1.95910 1.73857 1.23091 0.90351 1.16023 1.85268 1.24440 1.18428 1.65466 1.22312 0.78322 1.02012 1.00050 1.22714 1.02664 0.99213 0.94629 1.20202 0.90657 0.90486 0.91446 0.93171 1.42389 1.16505 1.64394 1.12649 1.19163 0.91798 1.27532 0.98665 0.91226 1.24728 0.98117 1.01456 0.96419 1.69648 1.35292 1.48260 1.04747 0.86305 0.84141 0.79187 0.76745 1.21772 1.21293 1.21281 0.93100 0.93224 0.92916 0.89627 0.92326 0.88678 0.90722 0.78899 0.89418 0.90411 0.90063 0.92048 0.78151 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.16 0.36 -1.58 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.58 1.92 -90.50 -0.17 -1.75 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.52 5.34 -3.71 -0.02 1.50 16 6 N -0.59 -7.51 2.97 -174.00 -0.52 -8.03 16 7 C 0.60 7.90 7.68 -12.48 -0.10 7.80 16 8 O -0.52 -7.84 16.34 5.29 0.09 -7.75 16 9 C -0.06 -0.69 6.89 -36.33 -0.25 -0.94 16 10 C -0.14 -1.43 10.97 -38.90 -0.43 -1.86 16 11 C 0.05 0.57 7.97 -17.03 -0.14 0.43 16 12 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 13 N -0.33 -4.01 12.05 32.82 0.40 -3.62 16 14 O 0.14 1.62 7.94 15.55 0.12 1.74 16 15 C 0.10 1.19 6.14 -3.71 -0.02 1.16 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 17 C 0.18 3.20 2.19 -67.89 -0.15 3.05 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 N -0.72 -16.42 4.33 -53.39 -0.23 -16.65 16 20 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 21 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.56 6.70 -51.93 -0.35 0.22 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.56 7.22 -51.93 -0.37 1.18 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.23 5.72 -51.93 -0.30 0.93 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.09 1.02 4.28 -52.51 -0.22 0.80 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.38 9.54 7.51 -40.82 -0.31 9.23 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -28.92 350.91 -7.45 -36.37 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.32 Total: 6.90 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.45 Total: -3.28 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.37 Total: -54.60 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.21 Total: -6.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.92 -7.45 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.991 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds