Wall clock time and date at job start Tue Mar 31 2020 14:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 H 1.09003 * 109.52275 * 305.08296 * 3 2 1 5 5 C 1.53188 * 109.49512 * 65.16127 * 3 2 1 6 6 N 1.46926 * 108.77513 * 174.58553 * 5 3 2 7 7 C 1.34779 * 120.63358 * 126.36979 * 6 5 3 8 8 O 1.21581 * 119.99901 * 353.03768 * 7 6 5 9 9 C 1.47519 * 120.00040 * 173.03719 * 7 6 5 10 10 C 1.36783 * 126.92482 * 172.73434 * 9 7 6 11 11 C 1.41416 * 103.83434 * 179.97438 * 10 9 7 12 12 Cl 1.73601 * 126.72378 * 180.02562 * 11 10 9 13 13 N 1.30220 * 106.55344 * 0.02562 * 11 10 9 14 14 O 1.20890 * 111.95516 * 359.71938 * 13 11 10 15 15 C 1.46929 * 118.73984 * 306.39313 * 6 5 3 16 16 C 1.53197 * 108.76237 * 53.61342 * 15 6 5 17 17 C 1.53035 * 109.31428 * 305.34468 * 16 15 6 18 18 H 1.08998 * 109.46502 * 301.37374 * 17 16 15 19 19 N 1.46501 * 109.46209 * 181.39710 * 17 16 15 20 20 C 1.36933 * 119.99740 * 84.97518 * 19 17 16 21 21 H 1.08004 * 120.00026 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00260 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99454 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00316 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47394 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47180 * 300.00389 * 24 22 20 27 27 H 1.48502 * 109.47016 * 60.00306 * 24 22 20 28 28 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46997 * 300.00084 * 1 2 3 30 30 H 1.08996 * 109.47281 * 59.99761 * 1 2 3 31 31 H 1.08994 * 109.46952 * 239.99969 * 2 1 3 32 32 H 1.08998 * 109.47012 * 119.99774 * 2 1 3 33 33 H 1.08997 * 109.59126 * 294.37140 * 5 3 2 34 34 H 1.09006 * 109.58688 * 54.65905 * 5 3 2 35 35 H 1.07999 * 128.08457 * 359.96719 * 10 9 7 36 36 H 1.08993 * 109.59066 * 173.39120 * 15 6 5 37 37 H 1.08996 * 109.58577 * 293.67729 * 15 6 5 38 38 H 1.09004 * 109.48684 * 185.40110 * 16 15 6 39 39 H 1.08999 * 109.50750 * 65.30824 * 16 15 6 40 40 H 0.97000 * 120.00108 * 264.97686 * 19 17 16 41 41 H 0.96996 * 119.99428 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1267 1.3105 6 7 2.2450 3.4644 1.3507 7 6 1.4856 4.5565 1.5673 8 8 0.2744 4.4570 1.6055 9 6 2.1238 5.8727 1.7581 10 6 1.4965 7.0849 1.8484 11 6 2.5578 8.0026 2.0253 12 17 2.4224 9.7237 2.2076 13 7 3.6566 7.3037 2.0248 14 8 3.4409 6.1226 1.8836 15 6 3.6952 3.5889 1.1499 16 6 4.0733 2.8883 -0.1590 17 6 3.5652 1.4451 -0.1257 18 1 4.0008 0.9263 0.7281 19 7 3.9541 0.7621 -1.3621 20 6 5.1920 0.1859 -1.4657 21 1 5.8818 0.2354 -0.6361 22 6 5.5604 -0.4617 -2.6369 23 7 4.7199 -0.5215 -3.6481 24 14 7.2493 -1.2471 -2.7785 25 1 7.3952 -1.8691 -4.1190 26 1 8.2950 -0.2081 -2.5988 27 1 7.4005 -2.2880 -1.7302 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5532 2.2161 1.3585 34 1 1.9943 1.5363 2.1549 35 1 0.4380 7.2926 1.7965 36 1 3.9669 4.6428 1.0919 37 1 4.2208 3.1213 1.9824 38 1 5.1574 2.8898 -0.2722 39 1 3.6187 3.4148 -0.9982 40 1 3.3348 0.7181 -2.1073 41 1 4.9775 -0.9737 -4.4666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037954658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:02 Heat of formation + Delta-G solvation = 23.676160 kcal Electronic energy + Delta-G solvation = -26028.436104 eV Core-core repulsion = 22165.655204 eV Total energy + Delta-G solvation = -3862.780900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -46.41935 -41.40721 -39.26788 -38.27641 -36.38439 -35.38338 -34.90643 -33.50538 -33.29704 -31.13659 -30.06833 -27.17477 -25.53121 -25.13577 -24.71267 -23.86409 -22.26199 -21.85853 -20.91620 -19.31085 -19.13261 -18.84285 -17.84427 -17.44051 -16.77772 -16.40868 -16.18003 -15.60251 -15.53242 -15.26357 -15.06090 -14.68920 -14.59302 -14.47495 -14.03469 -13.90485 -13.62953 -13.56594 -13.10925 -12.99857 -12.78505 -12.64699 -12.50386 -12.24925 -12.20001 -12.06618 -11.81346 -11.63381 -11.49610 -11.41069 -11.25610 -11.07270 -11.05679 -10.79539 -9.83217 -8.93367 -7.88443 -5.15449 -0.52349 0.24769 0.58703 1.23976 1.50800 1.52255 1.57964 1.67740 1.94432 2.60327 2.90751 3.33119 3.44500 3.48358 3.74887 3.80519 3.81211 3.98397 4.10009 4.25859 4.35661 4.43874 4.51112 4.52822 4.67588 4.77650 4.80369 4.83474 4.91929 5.03658 5.04887 5.19147 5.29351 5.38033 5.47892 5.54888 5.61109 5.66762 6.05441 6.33146 6.54224 6.77175 7.40062 8.16705 8.39043 9.34858 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.003093 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.808952 B = 9051.917398 C =10487.315099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.095 4.095 4 H 0.055 0.945 5 C 0.125 3.875 6 N -0.589 5.589 7 C 0.605 3.395 8 O -0.537 6.537 9 C -0.071 4.071 10 C -0.126 4.126 11 C 0.051 3.949 12 Cl 0.046 6.954 13 N -0.346 5.346 14 O 0.136 5.864 15 C 0.107 3.893 16 C -0.142 4.142 17 C 0.178 3.822 18 H 0.054 0.946 19 N -0.730 5.730 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.965 3.035 25 H -0.302 1.302 26 H -0.280 1.280 27 H -0.278 1.278 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.215 0.785 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.371 0.629 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 14.754 15.171 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.115 4.115 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.319 5.319 7 C 0.391 3.609 8 O -0.415 6.415 9 C -0.137 4.137 10 C -0.149 4.149 11 C -0.132 4.132 12 Cl 0.074 6.926 13 N -0.049 5.049 14 O 0.062 5.938 15 C -0.016 4.016 16 C -0.183 4.183 17 C 0.069 3.931 18 H 0.072 0.928 19 N -0.369 5.369 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.795 3.205 25 H -0.229 1.229 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.203 0.797 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.059 15.104 15.388 22.688 hybrid contribution 0.175 -0.274 -1.147 1.193 sum -6.885 14.831 14.240 21.682 Atomic orbital electron populations 1.21793 0.94795 1.01913 1.01897 1.21352 0.96095 0.94936 1.02110 1.21653 0.95689 0.96723 0.97400 0.92686 1.21888 0.99920 0.80261 0.97594 1.48130 1.09296 1.06606 1.67864 1.16613 0.85614 0.81115 0.77570 1.90855 1.13027 1.84329 1.53269 1.24080 0.83808 0.97366 1.08417 1.23020 1.02798 0.87990 1.01053 1.24223 0.90277 0.91561 1.07178 1.98435 1.97395 1.00984 1.95765 1.73840 1.23836 0.90576 1.16688 1.85222 1.24426 1.18397 1.65745 1.22229 0.78307 1.02474 0.98583 1.22495 1.01623 0.97970 0.96229 1.20451 0.92563 0.90904 0.89174 0.92805 1.42574 1.15442 1.64888 1.13991 1.19563 0.92642 1.25590 0.98314 0.90356 1.25453 1.01388 1.03309 0.96640 1.69809 1.37047 1.50168 1.05145 0.85331 0.80595 0.78456 0.76103 1.22892 1.20597 1.20465 0.92297 0.91274 0.93649 0.93599 0.91361 0.88251 0.88540 0.76833 0.88322 0.88209 0.91240 0.93687 0.79744 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.67 71.98 0.70 -2.85 16 2 C -0.11 -3.14 5.31 30.60 0.16 -2.98 16 3 C -0.09 -2.78 1.92 -10.72 -0.02 -2.80 16 4 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 5 C 0.12 2.92 5.34 86.36 0.46 3.38 16 6 N -0.59 -13.81 2.97 -822.69 -2.45 -16.26 16 7 C 0.61 14.68 7.68 86.69 0.67 15.35 16 8 O -0.54 -15.24 16.34 -3.97 -0.06 -15.31 16 9 C -0.07 -1.51 6.89 24.38 0.17 -1.34 16 10 C -0.13 -2.26 10.97 22.71 0.25 -2.01 16 11 C 0.05 0.98 7.97 85.71 0.68 1.66 16 12 Cl 0.05 0.72 29.33 -2.72 -0.08 0.64 16 13 N -0.35 -7.75 12.05 -51.03 -0.61 -8.37 16 14 O 0.14 2.92 7.94 65.83 0.52 3.45 16 15 C 0.11 2.42 6.14 86.36 0.53 2.95 16 16 C -0.14 -4.39 5.66 30.67 0.17 -4.21 16 17 C 0.18 6.15 2.19 45.02 0.10 6.25 16 18 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 19 N -0.73 -34.00 4.33 -322.82 -1.40 -35.40 16 20 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 23 N -0.97 -58.10 13.06 21.65 0.28 -57.82 16 24 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.41 6.70 -2.39 -0.02 1.39 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.72 7.22 -2.39 -0.02 1.71 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.32 5.72 -2.39 -0.01 2.30 16 34 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.10 2.10 4.28 -11.48 -0.05 2.05 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.37 19.16 7.51 -92.71 -0.70 18.46 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -62.82 350.91 3.74 -59.08 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.34 Total: 24.42 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.17 Total: -1.42 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.17 Total: -117.84 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.46 Total: -11.86 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -62.82 3.74 -59.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.760 kcal (2) G-P(sol) polarization free energy of solvation -62.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds