Wall clock time and date at job start Tue Mar 31 2020 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46544 * 2 1 4 4 H 1.09002 * 109.49918 * 304.92872 * 3 2 1 5 5 C 1.53194 * 109.50166 * 65.00019 * 3 2 1 6 6 N 1.46919 * 108.77567 * 174.58408 * 5 3 2 7 7 C 1.34780 * 120.63205 * 126.41283 * 6 5 3 8 8 O 1.21589 * 119.99763 * 353.03548 * 7 6 5 9 9 C 1.47518 * 120.00303 * 173.03584 * 7 6 5 10 10 C 1.36784 * 126.92818 * 172.74404 * 9 7 6 11 11 C 1.41408 * 103.83767 * 179.97438 * 10 9 7 12 12 Cl 1.73605 * 126.72518 * 180.02562 * 11 10 9 13 13 N 1.30224 * 106.54991 * 359.97438 * 11 10 9 14 14 O 1.20883 * 111.96151 * 359.69964 * 13 11 10 15 15 C 1.46926 * 118.74130 * 306.38653 * 6 5 3 16 16 C 1.53193 * 108.77313 * 53.61195 * 15 6 5 17 17 C 1.53039 * 109.31108 * 305.36327 * 16 15 6 18 18 H 1.08998 * 109.45894 * 181.38509 * 17 16 15 19 19 N 1.46499 * 109.46414 * 301.34550 * 17 16 15 20 20 C 1.36936 * 119.99789 * 275.07133 * 19 17 16 21 21 H 1.07990 * 120.00323 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99742 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00227 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00063 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46976 * 89.99938 * 24 22 20 26 26 H 1.48497 * 109.47258 * 210.00169 * 24 22 20 27 27 H 1.48501 * 109.47113 * 330.00034 * 24 22 20 28 28 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46884 * 60.00483 * 1 2 3 30 30 H 1.08995 * 109.47779 * 300.00301 * 1 2 3 31 31 H 1.09001 * 109.46884 * 119.99517 * 2 1 3 32 32 H 1.08995 * 109.47138 * 240.00099 * 2 1 3 33 33 H 1.08998 * 109.58288 * 294.37322 * 5 3 2 34 34 H 1.08996 * 109.58741 * 54.65003 * 5 3 2 35 35 H 1.07998 * 128.08027 * 359.96294 * 10 9 7 36 36 H 1.09003 * 109.58923 * 173.39417 * 15 6 5 37 37 H 1.08998 * 109.58416 * 293.82540 * 15 6 5 38 38 H 1.08996 * 109.49682 * 65.31859 * 16 15 6 39 39 H 1.09001 * 109.49710 * 185.37972 * 16 15 6 40 40 H 0.97002 * 120.00136 * 95.06750 * 19 17 16 41 41 H 0.96993 * 120.00156 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8424 5 6 1.6349 2.1281 1.3088 6 7 2.2413 3.4657 1.3493 7 6 1.4813 4.5580 1.5636 8 8 0.2701 4.4584 1.5994 9 6 2.1191 5.8744 1.7547 10 6 1.4915 7.0866 1.8431 11 6 2.5524 8.0045 2.0214 12 17 2.4165 9.7257 2.2024 13 7 3.6511 7.3055 2.0245 14 8 3.4358 6.1242 1.8846 15 6 3.6919 3.5901 1.1522 16 6 4.0739 2.8882 -0.1548 17 6 3.5655 1.4451 -0.1216 18 1 3.8574 0.9361 -1.0401 19 7 4.1479 0.7487 1.0282 20 6 5.3860 0.1730 0.9247 21 1 5.9330 0.2319 -0.0045 22 6 5.9381 -0.4865 2.0144 23 7 7.1279 -1.0403 1.9148 24 14 4.9923 -0.5879 3.6221 25 1 4.1496 -1.8106 3.6243 26 1 5.9489 -0.6439 4.7565 27 1 4.1264 0.6103 3.7634 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 0.5495 2.2174 1.3538 34 1 1.9883 1.5386 2.1547 35 1 0.4331 7.2942 1.7891 36 1 3.9638 4.6440 1.0939 37 1 4.2153 3.1210 1.9854 38 1 3.6218 3.4140 -0.9957 39 1 5.1583 2.8899 -0.2652 40 1 3.6565 0.6954 1.8629 41 1 7.5138 -1.5007 2.6763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037954659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:05 Heat of formation + Delta-G solvation = 46.858010 kcal Electronic energy + Delta-G solvation = -26573.623511 eV Core-core repulsion = 22711.847851 eV Total energy + Delta-G solvation = -3861.775659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -45.50895 -40.36179 -38.20782 -37.49226 -34.96993 -33.99792 -33.94622 -32.39190 -31.84953 -29.96605 -28.94889 -26.10575 -24.27880 -23.82053 -23.63327 -23.06029 -21.09010 -20.84628 -18.98031 -18.32893 -17.97284 -17.65483 -16.83009 -16.38593 -15.48085 -15.26718 -14.79474 -14.47504 -14.33542 -14.13160 -13.85713 -13.58691 -13.41705 -13.24573 -13.10880 -12.74888 -12.60310 -12.50641 -11.95891 -11.75930 -11.44923 -11.35575 -11.13827 -11.03579 -10.88831 -10.59741 -10.45241 -10.43243 -10.30790 -10.23065 -10.11020 -9.90724 -9.60900 -9.01665 -8.62687 -7.34385 -5.83030 -3.19111 0.41102 1.06120 1.45546 2.21098 2.71994 2.95391 3.29749 3.32746 3.40800 3.82741 4.28925 4.35727 4.52142 4.62336 4.91368 4.98387 5.11410 5.23913 5.27964 5.37008 5.45623 5.49911 5.51623 5.56654 5.67886 5.78071 5.93497 5.97402 6.07843 6.15733 6.23819 6.31781 6.39114 6.46946 6.58451 6.67859 6.75822 7.15640 7.50056 7.79635 7.92595 8.35741 9.13349 9.85786 10.04773 11.35269 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003796 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.747733 B = 7374.996533 C = 8522.068468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.075 0.925 5 C 0.116 3.884 6 N -0.585 5.585 7 C 0.599 3.401 8 O -0.519 6.519 9 C -0.059 4.059 10 C -0.142 4.142 11 C 0.052 3.948 12 Cl 0.029 6.971 13 N -0.330 5.330 14 O 0.141 5.859 15 C 0.101 3.899 16 C -0.149 4.149 17 C 0.184 3.816 18 H 0.064 0.936 19 N -0.743 5.743 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.009 3.991 23 N -0.932 5.932 24 Si 0.877 3.123 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.360 0.640 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 14.904 -2.288 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.094 0.906 5 C -0.005 4.005 6 N -0.316 5.316 7 C 0.384 3.616 8 O -0.396 6.396 9 C -0.124 4.124 10 C -0.165 4.165 11 C -0.131 4.131 12 Cl 0.057 6.943 13 N -0.032 5.032 14 O 0.066 5.934 15 C -0.021 4.021 16 C -0.190 4.190 17 C 0.074 3.926 18 H 0.082 0.918 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.708 3.292 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.211 0.789 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.194 0.806 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.342 15.222 -2.195 19.720 hybrid contribution -1.130 0.224 1.280 1.722 sum -13.472 15.446 -0.914 20.516 Atomic orbital electron populations 1.21869 0.96537 1.01307 1.01511 1.21434 0.94532 0.95435 1.03515 1.21832 0.97593 0.96397 0.96891 0.90639 1.21870 0.99253 0.80564 0.98832 1.48118 1.09431 1.06299 1.67704 1.16566 0.85906 0.80833 0.78332 1.90854 1.12175 1.84010 1.52582 1.24287 0.83629 0.97553 1.06953 1.22701 1.01877 0.88773 1.03160 1.24029 0.90538 0.90625 1.07936 1.98422 1.97467 1.02427 1.95952 1.73873 1.23105 0.90357 1.15872 1.85305 1.24420 1.18345 1.65314 1.22201 0.77869 1.01261 1.00778 1.22519 1.02761 0.98684 0.94995 1.20214 0.89289 0.90671 0.92456 0.91824 1.42841 1.19756 1.65858 1.10264 1.19041 0.92094 1.26836 0.99268 0.89087 1.24636 0.96420 1.00212 0.97481 1.69683 1.16292 1.41106 1.30837 0.86683 0.79482 0.77774 0.85274 1.21012 1.21744 1.20511 0.92953 0.93023 0.92858 0.91049 0.91285 0.88738 0.90736 0.78947 0.89654 0.89220 0.92736 0.89686 0.80635 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.39 16 2 C -0.11 -1.50 5.19 -26.73 -0.14 -1.64 16 3 C -0.11 -1.48 2.14 -90.49 -0.19 -1.68 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.12 1.64 5.03 -3.71 -0.02 1.62 16 6 N -0.58 -8.26 2.97 -174.01 -0.52 -8.78 16 7 C 0.60 8.37 7.68 -12.48 -0.10 8.27 16 8 O -0.52 -8.14 16.35 5.29 0.09 -8.05 16 9 C -0.06 -0.73 6.89 -36.33 -0.25 -0.98 16 10 C -0.14 -1.52 10.97 -38.90 -0.43 -1.94 16 11 C 0.05 0.58 7.97 -17.03 -0.14 0.45 16 12 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 13 N -0.33 -4.30 12.05 32.82 0.40 -3.90 16 14 O 0.14 1.82 7.94 15.53 0.12 1.94 16 15 C 0.10 1.46 5.88 -3.71 -0.02 1.43 16 16 C -0.15 -2.21 5.78 -26.61 -0.15 -2.37 16 17 C 0.18 3.03 2.53 -67.89 -0.17 2.85 16 18 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 19 N -0.74 -15.26 3.52 -53.39 -0.19 -15.45 16 20 C -0.24 -6.19 10.41 -15.06 -0.16 -6.35 16 21 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -27.95 13.97 55.49 0.78 -27.18 16 24 Si 0.88 20.93 27.73 -169.99 -4.71 16.21 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 31 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 34 H 0.07 1.14 6.64 -51.93 -0.35 0.79 16 35 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 1.12 4.28 -52.49 -0.22 0.90 16 37 H 0.09 1.49 7.74 -51.93 -0.40 1.08 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.36 7.40 3.81 -40.82 -0.16 7.24 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -29.15 344.17 -7.01 -36.16 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.14 Total: 6.68 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.50 Total: -1.58 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.47 Total: -55.31 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: 0.21 Total: -6.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.21 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.15 -7.01 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.021 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds