Wall clock time and date at job start Tue Mar 31 2020 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46544 * 2 1 4 4 H 1.09002 * 109.49918 * 304.92872 * 3 2 1 5 5 C 1.53194 * 109.50166 * 65.00019 * 3 2 1 6 6 N 1.46919 * 108.77567 * 174.58408 * 5 3 2 7 7 C 1.34780 * 120.63205 * 126.41283 * 6 5 3 8 8 O 1.21589 * 119.99763 * 353.03548 * 7 6 5 9 9 C 1.47518 * 120.00303 * 173.03584 * 7 6 5 10 10 C 1.36784 * 126.92818 * 172.74404 * 9 7 6 11 11 C 1.41408 * 103.83767 * 179.97438 * 10 9 7 12 12 Cl 1.73605 * 126.72518 * 180.02562 * 11 10 9 13 13 N 1.30224 * 106.54991 * 359.97438 * 11 10 9 14 14 O 1.20883 * 111.96151 * 359.69964 * 13 11 10 15 15 C 1.46926 * 118.74130 * 306.38653 * 6 5 3 16 16 C 1.53193 * 108.77313 * 53.61195 * 15 6 5 17 17 C 1.53039 * 109.31108 * 305.36327 * 16 15 6 18 18 H 1.08998 * 109.45894 * 181.38509 * 17 16 15 19 19 N 1.46499 * 109.46414 * 301.34550 * 17 16 15 20 20 C 1.36936 * 119.99789 * 275.07133 * 19 17 16 21 21 H 1.07990 * 120.00323 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99742 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00227 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00063 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46976 * 89.99938 * 24 22 20 26 26 H 1.48497 * 109.47258 * 210.00169 * 24 22 20 27 27 H 1.48501 * 109.47113 * 330.00034 * 24 22 20 28 28 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46884 * 60.00483 * 1 2 3 30 30 H 1.08995 * 109.47779 * 300.00301 * 1 2 3 31 31 H 1.09001 * 109.46884 * 119.99517 * 2 1 3 32 32 H 1.08995 * 109.47138 * 240.00099 * 2 1 3 33 33 H 1.08998 * 109.58288 * 294.37322 * 5 3 2 34 34 H 1.08996 * 109.58741 * 54.65003 * 5 3 2 35 35 H 1.07998 * 128.08027 * 359.96294 * 10 9 7 36 36 H 1.09003 * 109.58923 * 173.39417 * 15 6 5 37 37 H 1.08998 * 109.58416 * 293.82540 * 15 6 5 38 38 H 1.08996 * 109.49682 * 65.31859 * 16 15 6 39 39 H 1.09001 * 109.49710 * 185.37972 * 16 15 6 40 40 H 0.97002 * 120.00136 * 95.06750 * 19 17 16 41 41 H 0.96993 * 120.00156 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8424 5 6 1.6349 2.1281 1.3088 6 7 2.2413 3.4657 1.3493 7 6 1.4813 4.5580 1.5636 8 8 0.2701 4.4584 1.5994 9 6 2.1191 5.8744 1.7547 10 6 1.4915 7.0866 1.8431 11 6 2.5524 8.0045 2.0214 12 17 2.4165 9.7257 2.2024 13 7 3.6511 7.3055 2.0245 14 8 3.4358 6.1242 1.8846 15 6 3.6919 3.5901 1.1522 16 6 4.0739 2.8882 -0.1548 17 6 3.5655 1.4451 -0.1216 18 1 3.8574 0.9361 -1.0401 19 7 4.1479 0.7487 1.0282 20 6 5.3860 0.1730 0.9247 21 1 5.9330 0.2319 -0.0045 22 6 5.9381 -0.4865 2.0144 23 7 7.1279 -1.0403 1.9148 24 14 4.9923 -0.5879 3.6221 25 1 4.1496 -1.8106 3.6243 26 1 5.9489 -0.6439 4.7565 27 1 4.1264 0.6103 3.7634 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 0.5495 2.2174 1.3538 34 1 1.9883 1.5386 2.1547 35 1 0.4331 7.2942 1.7891 36 1 3.9638 4.6440 1.0939 37 1 4.2153 3.1210 1.9854 38 1 3.6218 3.4140 -0.9957 39 1 5.1583 2.8899 -0.2652 40 1 3.6565 0.6954 1.8629 41 1 7.5138 -1.5007 2.6763 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037954659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:05 Heat of formation + Delta-G solvation = 29.645095 kcal Electronic energy + Delta-G solvation = -26574.369919 eV Core-core repulsion = 22711.847851 eV Total energy + Delta-G solvation = -3862.522067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.43490 -41.52313 -39.44228 -38.28981 -36.21771 -35.43457 -34.91849 -33.60725 -33.31335 -31.53888 -30.11747 -27.30198 -25.41187 -25.17133 -24.74255 -24.40576 -22.23022 -21.88492 -20.25703 -19.84647 -19.25299 -18.85320 -17.83436 -17.47245 -16.78167 -16.36930 -16.29833 -15.80892 -15.60068 -15.19312 -15.05983 -14.88013 -14.73464 -14.43313 -14.20419 -13.92672 -13.80075 -13.61298 -13.29129 -12.96547 -12.92081 -12.65527 -12.46496 -12.25669 -12.17294 -12.04559 -11.84574 -11.67183 -11.50465 -11.42834 -11.27218 -11.15135 -11.08005 -10.86416 -9.83074 -9.22361 -7.95693 -5.26818 -0.54571 0.22881 0.57695 1.22121 1.38129 1.40723 1.47732 1.66739 1.91260 2.51751 2.88915 3.29700 3.36678 3.46450 3.62519 3.73139 3.77557 3.92916 3.99850 4.24136 4.27910 4.37393 4.46610 4.51722 4.56207 4.65623 4.78652 4.88385 4.98277 4.99317 5.14707 5.18147 5.21879 5.28282 5.40206 5.47593 5.61518 5.87222 6.04220 6.28333 6.51804 6.74807 7.15375 7.91688 8.09568 9.26223 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.003796 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.747733 B = 7374.996533 C = 8522.068468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.095 4.095 4 H 0.095 0.905 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.606 3.394 8 O -0.534 6.534 9 C -0.073 4.073 10 C -0.122 4.122 11 C 0.052 3.948 12 Cl 0.048 6.952 13 N -0.348 5.348 14 O 0.130 5.870 15 C 0.108 3.892 16 C -0.142 4.142 17 C 0.177 3.823 18 H 0.054 0.946 19 N -0.741 5.741 20 C -0.211 4.211 21 H 0.062 0.938 22 C -0.060 4.060 23 N -0.985 5.985 24 Si 0.938 3.062 25 H -0.280 1.280 26 H -0.304 1.304 27 H -0.254 1.254 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.218 0.782 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.363 0.637 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 16.853 -2.329 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.114 0.886 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.392 3.608 8 O -0.412 6.412 9 C -0.139 4.139 10 C -0.145 4.145 11 C -0.131 4.131 12 Cl 0.076 6.924 13 N -0.052 5.052 14 O 0.057 5.943 15 C -0.014 4.014 16 C -0.183 4.183 17 C 0.068 3.932 18 H 0.072 0.928 19 N -0.385 5.385 20 C -0.343 4.343 21 H 0.080 0.920 22 C -0.251 4.251 23 N -0.637 5.637 24 Si 0.767 3.233 25 H -0.207 1.207 26 H -0.231 1.231 27 H -0.178 1.178 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.197 0.803 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.166 17.208 -2.263 23.048 hybrid contribution -0.295 -0.254 1.179 1.241 sum -15.460 16.953 -1.084 22.970 Atomic orbital electron populations 1.21811 0.94409 1.02078 1.02271 1.21403 0.96380 0.94801 1.02239 1.21736 0.95087 0.96994 0.97688 0.88634 1.21851 0.99832 0.80485 0.98263 1.48087 1.09111 1.06514 1.67966 1.16591 0.85621 0.81050 0.77550 1.90846 1.12759 1.84393 1.53248 1.24113 0.83787 0.97435 1.08514 1.23023 1.02786 0.87727 1.00915 1.24251 0.90260 0.91611 1.07003 1.98434 1.97375 1.00831 1.95780 1.73866 1.24050 0.90519 1.16732 1.85252 1.24691 1.18463 1.65886 1.22051 0.78064 1.01908 0.99383 1.22391 1.01785 0.97651 0.96447 1.20442 0.91316 0.91001 0.90404 0.92815 1.42792 1.18153 1.65875 1.11729 1.18993 0.93081 1.24630 0.97567 0.92025 1.25306 0.97444 1.01287 1.01065 1.69858 1.18592 1.43572 1.31643 0.85668 0.78191 0.78716 0.80722 1.20685 1.23103 1.17836 0.92286 0.91786 0.92494 0.93179 0.91754 0.87627 0.91944 0.76520 0.88135 0.91501 0.90126 0.91452 0.80305 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.67 71.98 0.70 -2.27 16 2 C -0.11 -2.80 5.19 30.60 0.16 -2.64 16 3 C -0.10 -2.44 2.14 -10.71 -0.02 -2.46 16 4 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 5 C 0.12 3.05 5.03 86.36 0.43 3.49 16 6 N -0.59 -15.32 2.97 -822.70 -2.45 -17.76 16 7 C 0.61 15.41 7.68 86.69 0.67 16.08 16 8 O -0.53 -15.22 16.35 -3.99 -0.07 -15.28 16 9 C -0.07 -1.65 6.89 24.38 0.17 -1.48 16 10 C -0.12 -2.24 10.97 22.71 0.25 -1.99 16 11 C 0.05 1.04 7.97 85.71 0.68 1.73 16 12 Cl 0.05 0.77 29.33 -2.72 -0.08 0.69 16 13 N -0.35 -8.45 12.05 -51.03 -0.61 -9.06 16 14 O 0.13 3.15 7.94 65.76 0.52 3.67 16 15 C 0.11 2.98 5.88 86.36 0.51 3.49 16 16 C -0.14 -4.07 5.78 30.67 0.18 -3.89 16 17 C 0.18 5.67 2.53 45.02 0.11 5.78 16 18 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 19 N -0.74 -30.27 3.52 -322.81 -1.14 -31.41 16 20 C -0.21 -11.02 10.41 84.03 0.87 -10.15 16 21 H 0.06 3.54 8.06 -2.92 -0.02 3.52 16 22 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 23 N -0.99 -61.27 13.97 21.65 0.30 -60.97 16 24 Si 0.94 43.78 27.73 68.60 1.90 45.68 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 27 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.10 6.70 -2.39 -0.02 1.08 16 31 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.57 5.72 -2.39 -0.01 2.55 16 34 H 0.06 1.79 6.64 -2.39 -0.02 1.78 16 35 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.10 2.50 4.28 -11.32 -0.05 2.45 16 37 H 0.07 2.17 7.74 -2.39 -0.02 2.15 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.36 14.57 3.81 -92.71 -0.35 14.22 16 41 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -63.61 344.17 4.18 -59.43 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.63 Total: 22.21 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.17 Total: 2.80 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -3.89 Total: -119.20 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.46 Total: -11.61 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -63.61 4.18 -59.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.072 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds