Wall clock time and date at job start Tue Mar 31 2020 14:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 H 1.08999 * 109.49762 * 54.93489 * 3 2 1 5 5 C 1.52761 * 109.56671 * 294.96667 * 3 2 1 6 6 N 1.46919 * 109.01082 * 185.55382 * 5 3 2 7 7 C 1.34781 * 120.63244 * 233.58560 * 6 5 3 8 8 O 1.21587 * 119.99692 * 6.66832 * 7 6 5 9 9 C 1.47514 * 120.00119 * 186.67104 * 7 6 5 10 10 C 1.36792 * 126.92969 * 187.22377 * 9 7 6 11 11 C 1.41404 * 103.83933 * 180.14879 * 10 9 7 12 12 Cl 1.73602 * 126.72466 * 179.91540 * 11 10 9 13 13 N 1.30231 * 106.54875 * 359.64542 * 11 10 9 14 14 O 1.20875 * 111.96303 * 0.23087 * 13 11 10 15 15 C 1.46926 * 118.74122 * 53.30569 * 6 5 3 16 16 C 1.53191 * 108.77724 * 306.64787 * 15 6 5 17 17 C 1.53042 * 109.49716 * 175.00276 * 3 2 1 18 18 H 1.09004 * 109.44758 * 301.32922 * 17 3 2 19 19 N 1.46494 * 109.46248 * 61.29562 * 17 3 2 20 20 C 1.36936 * 120.00243 * 205.07196 * 19 17 3 21 21 H 1.07999 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31629 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00423 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47499 * 89.99062 * 24 22 20 26 26 H 1.48500 * 109.47374 * 209.99921 * 24 22 20 27 27 H 1.48506 * 109.46831 * 329.99312 * 24 22 20 28 28 H 1.09003 * 109.47274 * 59.99748 * 1 2 3 29 29 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47092 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.47011 * 240.00601 * 2 1 3 32 32 H 1.08997 * 109.47347 * 119.99837 * 2 1 3 33 33 H 1.08996 * 109.51127 * 65.66777 * 5 3 2 34 34 H 1.09002 * 109.43412 * 305.39089 * 5 3 2 35 35 H 1.08002 * 128.07558 * 0.02562 * 10 9 7 36 36 H 1.09005 * 109.58570 * 66.43419 * 15 6 5 37 37 H 1.09000 * 109.58892 * 186.85486 * 15 6 5 38 38 H 1.09002 * 109.50196 * 174.57993 * 16 15 6 39 39 H 1.09000 * 109.49959 * 294.65309 * 16 15 6 40 40 H 0.97004 * 120.00285 * 25.06661 * 19 17 3 41 41 H 0.96997 * 119.99408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5566 -1.5672 8 8 0.2745 4.4569 -1.6059 9 6 2.1238 5.8729 -1.7572 10 6 1.4964 7.0850 -1.8481 11 6 2.5575 8.0025 -2.0267 12 17 2.4218 9.7233 -2.2118 13 7 3.6568 7.3043 -2.0193 14 8 3.4418 6.1241 -1.8716 15 6 3.6952 3.5889 -1.1498 16 6 4.0737 2.8882 0.1589 17 6 3.5652 1.4450 0.1257 18 1 3.8544 0.9369 1.0456 19 7 4.1507 0.7476 -1.0219 20 6 5.3879 0.1706 -0.9141 21 1 5.9322 0.2301 0.0168 22 6 5.9429 -0.4898 -2.0016 23 7 5.2797 -0.5619 -3.1363 24 14 7.6302 -1.2775 -1.8544 25 1 7.4828 -2.6813 -1.3929 26 1 8.3021 -1.2597 -3.1786 27 1 8.4474 -0.5176 -0.8745 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5524 2.2173 -1.3492 34 1 1.9921 1.5359 -2.1491 35 1 0.4377 7.2925 -1.7974 36 1 4.2209 3.1190 -1.9811 37 1 3.9670 4.6428 -1.0919 38 1 5.1578 2.8894 0.2719 39 1 3.6197 3.4151 0.9982 40 1 3.6620 0.6943 -1.8581 41 1 5.6674 -1.0238 -3.8961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037954660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:09 Heat of formation + Delta-G solvation = 42.592167 kcal Electronic energy + Delta-G solvation = -26454.560715 eV Core-core repulsion = 22592.600075 eV Total energy + Delta-G solvation = -3861.960640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.42834 -40.21914 -38.05106 -37.43473 -34.82982 -33.90724 -33.82591 -32.30163 -31.76866 -29.53221 -28.64216 -25.90544 -24.15577 -23.79033 -23.61926 -23.19632 -21.01376 -20.73901 -18.88160 -18.22163 -17.61696 -17.41562 -16.71403 -16.25644 -15.31913 -15.19423 -14.64001 -14.47531 -14.16091 -13.94981 -13.88556 -13.40594 -13.30665 -13.12133 -13.04336 -12.69480 -12.60529 -12.28924 -11.78930 -11.52169 -11.37954 -11.15293 -10.99797 -10.85978 -10.77088 -10.47873 -10.35990 -10.34530 -10.21587 -10.13511 -10.02756 -9.85089 -9.60571 -8.96902 -8.47289 -7.02357 -5.82648 -3.11434 0.50098 1.12117 1.52795 2.31200 2.84215 3.07181 3.40130 3.46209 3.47500 3.91444 4.37605 4.45050 4.54719 4.70872 5.06100 5.17051 5.26242 5.35828 5.46110 5.50386 5.54730 5.62584 5.70360 5.75188 5.83599 5.98591 6.08017 6.12245 6.25016 6.29122 6.35515 6.45445 6.52422 6.64043 6.69093 6.85357 6.90586 7.29930 7.59257 7.65995 7.91979 8.35669 9.47686 10.02815 10.37751 11.39602 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003609 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.445521 B = 7757.194046 C = 9307.658683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.581 5.581 7 C 0.597 3.403 8 O -0.521 6.521 9 C -0.056 4.056 10 C -0.144 4.144 11 C 0.052 3.948 12 Cl 0.028 6.972 13 N -0.332 5.332 14 O 0.141 5.859 15 C 0.103 3.897 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.054 0.946 19 N -0.719 5.719 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.193 0.807 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.001 13.575 4.627 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.311 5.311 7 C 0.382 3.618 8 O -0.399 6.399 9 C -0.121 4.121 10 C -0.167 4.167 11 C -0.131 4.131 12 Cl 0.056 6.944 13 N -0.034 5.034 14 O 0.067 5.933 15 C -0.019 4.019 16 C -0.190 4.190 17 C 0.067 3.933 18 H 0.072 0.928 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.210 0.790 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.193 13.914 4.497 16.761 hybrid contribution 0.228 -0.105 -0.257 0.359 sum -7.964 13.808 4.240 16.495 Atomic orbital electron populations 1.21863 0.96752 1.01151 1.01371 1.21417 0.94297 0.95479 1.03578 1.21695 0.97570 0.96341 0.96788 0.91308 1.21793 0.98929 0.80450 0.99174 1.48108 1.09382 1.06373 1.67265 1.16570 0.85921 0.80831 0.78526 1.90849 1.12197 1.83990 1.52824 1.24339 0.83517 0.97600 1.06672 1.22692 1.01856 0.88779 1.03423 1.24017 0.90591 0.90535 1.07987 1.98417 1.97482 1.02602 1.95930 1.73863 1.23162 0.90499 1.15897 1.85313 1.24386 1.18343 1.65281 1.22181 0.78063 1.00875 1.00821 1.22545 1.02273 0.99195 0.95006 1.20242 0.89587 0.90603 0.92863 0.92814 1.42470 1.19200 1.63939 1.10487 1.19204 0.93616 1.27094 0.97101 0.91202 1.24696 0.98535 1.01378 0.95984 1.69644 1.38172 1.47927 1.02222 0.86246 0.84212 0.79336 0.76690 1.21837 1.21888 1.20814 0.92784 0.93086 0.93306 0.90370 0.91840 0.89079 0.89870 0.78992 0.88704 0.90016 0.90237 0.93163 0.78114 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C -0.10 -1.55 2.12 -90.72 -0.19 -1.74 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.79 5.02 -3.94 -0.02 1.77 16 6 N -0.58 -8.71 2.98 -174.27 -0.52 -9.23 16 7 C 0.60 8.84 7.68 -12.48 -0.10 8.75 16 8 O -0.52 -8.63 16.34 5.29 0.09 -8.54 16 9 C -0.06 -0.73 6.90 -36.33 -0.25 -0.98 16 10 C -0.14 -1.63 10.97 -38.90 -0.43 -2.05 16 11 C 0.05 0.61 7.97 -17.03 -0.14 0.47 16 12 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 13 N -0.33 -4.50 12.05 32.82 0.40 -4.10 16 14 O 0.14 1.91 7.93 15.52 0.12 2.03 16 15 C 0.10 1.57 5.89 -3.71 -0.02 1.54 16 16 C -0.15 -2.32 5.78 -26.61 -0.15 -2.48 16 17 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -15.60 3.72 -53.39 -0.20 -15.80 16 20 C -0.24 -6.00 9.93 -15.06 -0.15 -6.15 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -26.28 13.06 55.49 0.72 -25.55 16 24 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.35 5.71 -51.93 -0.30 1.05 16 34 H 0.08 1.41 6.64 -51.93 -0.35 1.06 16 35 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.09 1.70 7.74 -51.93 -0.40 1.29 16 37 H 0.08 1.14 4.26 -52.60 -0.22 0.91 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.38 8.91 5.95 -40.82 -0.24 8.67 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -27.73 347.26 -7.38 -35.10 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.18 Total: 7.39 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.49 Total: -1.61 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.40 Total: -54.68 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.21 Total: -6.50 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.73 -7.38 -35.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.697 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds