Wall clock time and date at job start Tue Mar 31 2020 14:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 H 1.08999 * 109.49762 * 54.93489 * 3 2 1 5 5 C 1.52761 * 109.56671 * 294.96667 * 3 2 1 6 6 N 1.46919 * 109.01082 * 185.55382 * 5 3 2 7 7 C 1.34781 * 120.63244 * 233.58560 * 6 5 3 8 8 O 1.21587 * 119.99692 * 6.66832 * 7 6 5 9 9 C 1.47514 * 120.00119 * 186.67104 * 7 6 5 10 10 C 1.36792 * 126.92969 * 187.22377 * 9 7 6 11 11 C 1.41404 * 103.83933 * 180.14879 * 10 9 7 12 12 Cl 1.73602 * 126.72466 * 179.91540 * 11 10 9 13 13 N 1.30231 * 106.54875 * 359.64542 * 11 10 9 14 14 O 1.20875 * 111.96303 * 0.23087 * 13 11 10 15 15 C 1.46926 * 118.74122 * 53.30569 * 6 5 3 16 16 C 1.53191 * 108.77724 * 306.64787 * 15 6 5 17 17 C 1.53042 * 109.49716 * 175.00276 * 3 2 1 18 18 H 1.09004 * 109.44758 * 301.32922 * 17 3 2 19 19 N 1.46494 * 109.46248 * 61.29562 * 17 3 2 20 20 C 1.36936 * 120.00243 * 205.07196 * 19 17 3 21 21 H 1.07999 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31629 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00423 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47499 * 89.99062 * 24 22 20 26 26 H 1.48500 * 109.47374 * 209.99921 * 24 22 20 27 27 H 1.48506 * 109.46831 * 329.99312 * 24 22 20 28 28 H 1.09003 * 109.47274 * 59.99748 * 1 2 3 29 29 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47092 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.47011 * 240.00601 * 2 1 3 32 32 H 1.08997 * 109.47347 * 119.99837 * 2 1 3 33 33 H 1.08996 * 109.51127 * 65.66777 * 5 3 2 34 34 H 1.09002 * 109.43412 * 305.39089 * 5 3 2 35 35 H 1.08002 * 128.07558 * 0.02562 * 10 9 7 36 36 H 1.09005 * 109.58570 * 66.43419 * 15 6 5 37 37 H 1.09000 * 109.58892 * 186.85486 * 15 6 5 38 38 H 1.09002 * 109.50196 * 174.57993 * 16 15 6 39 39 H 1.09000 * 109.49959 * 294.65309 * 16 15 6 40 40 H 0.97004 * 120.00285 * 25.06661 * 19 17 3 41 41 H 0.96997 * 119.99408 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6377 2.1274 -1.3049 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5566 -1.5672 8 8 0.2745 4.4569 -1.6059 9 6 2.1238 5.8729 -1.7572 10 6 1.4964 7.0850 -1.8481 11 6 2.5575 8.0025 -2.0267 12 17 2.4218 9.7233 -2.2118 13 7 3.6568 7.3043 -2.0193 14 8 3.4418 6.1241 -1.8716 15 6 3.6952 3.5889 -1.1498 16 6 4.0737 2.8882 0.1589 17 6 3.5652 1.4450 0.1257 18 1 3.8544 0.9369 1.0456 19 7 4.1507 0.7476 -1.0219 20 6 5.3879 0.1706 -0.9141 21 1 5.9322 0.2301 0.0168 22 6 5.9429 -0.4898 -2.0016 23 7 5.2797 -0.5619 -3.1363 24 14 7.6302 -1.2775 -1.8544 25 1 7.4828 -2.6813 -1.3929 26 1 8.3021 -1.2597 -3.1786 27 1 8.4474 -0.5176 -0.8745 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.5524 2.2173 -1.3492 34 1 1.9921 1.5359 -2.1491 35 1 0.4377 7.2925 -1.7974 36 1 4.2209 3.1190 -1.9811 37 1 3.9670 4.6428 -1.0919 38 1 5.1578 2.8894 0.2719 39 1 3.6197 3.4151 0.9982 40 1 3.6620 0.6943 -1.8581 41 1 5.6674 -1.0238 -3.8961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037954660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:08 Heat of formation + Delta-G solvation = 27.174226 kcal Electronic energy + Delta-G solvation = -26455.229287 eV Core-core repulsion = 22592.600075 eV Total energy + Delta-G solvation = -3862.629212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.41355 -41.46392 -39.35563 -38.28002 -36.13106 -35.37725 -34.89883 -33.47453 -33.25857 -31.05257 -29.98471 -27.18727 -25.55899 -25.24332 -24.71474 -24.41001 -22.21829 -21.86444 -20.18787 -19.29049 -19.20729 -18.82908 -17.79828 -17.43478 -16.70394 -16.37735 -16.15145 -15.78846 -15.56058 -15.21030 -15.04437 -14.74392 -14.67836 -14.38265 -14.05837 -13.91233 -13.63646 -13.59042 -13.05340 -12.89589 -12.82732 -12.62959 -12.36621 -12.24461 -12.11847 -12.08314 -11.81848 -11.63842 -11.43418 -11.37613 -11.25593 -11.09789 -11.06238 -10.79159 -9.76071 -8.88964 -7.85817 -5.11282 -0.52788 0.23606 0.59179 1.24589 1.51583 1.52805 1.59715 1.70483 1.94508 2.62468 2.91107 3.32166 3.47366 3.49445 3.75253 3.83344 3.88219 4.02625 4.10105 4.32635 4.34651 4.45975 4.50578 4.53409 4.62311 4.70596 4.84189 4.92098 5.02677 5.04014 5.18672 5.22674 5.28448 5.29507 5.43760 5.52861 5.62557 5.67500 6.10445 6.36407 6.54208 6.77549 7.44592 8.20517 8.43729 9.37245 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003609 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.445521 B = 7757.194046 C = 9307.658683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.090 0.910 5 C 0.123 3.877 6 N -0.583 5.583 7 C 0.603 3.397 8 O -0.537 6.537 9 C -0.071 4.071 10 C -0.123 4.123 11 C 0.053 3.947 12 Cl 0.049 6.951 13 N -0.348 5.348 14 O 0.130 5.870 15 C 0.112 3.888 16 C -0.142 4.142 17 C 0.172 3.828 18 H 0.051 0.949 19 N -0.724 5.724 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.959 3.041 25 H -0.293 1.293 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.218 0.782 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.375 0.625 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 15.315 6.151 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.313 5.313 7 C 0.389 3.611 8 O -0.416 6.416 9 C -0.137 4.137 10 C -0.146 4.146 11 C -0.130 4.130 12 Cl 0.077 6.923 13 N -0.052 5.052 14 O 0.057 5.943 15 C -0.010 4.010 16 C -0.183 4.183 17 C 0.063 3.937 18 H 0.069 0.931 19 N -0.365 5.365 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.790 3.210 25 H -0.221 1.221 26 H -0.230 1.230 27 H -0.196 1.196 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.208 0.792 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.166 15.674 6.075 19.147 hybrid contribution 0.469 -0.514 -0.684 0.976 sum -8.697 15.160 5.391 18.290 Atomic orbital electron populations 1.21800 0.94595 1.01951 1.02098 1.21336 0.96157 0.94924 1.01903 1.21608 0.95650 0.96720 0.97299 0.89162 1.21674 0.99240 0.80465 0.98455 1.48075 1.09176 1.06484 1.67566 1.16632 0.85653 0.81134 0.77692 1.90837 1.12830 1.84439 1.53507 1.24110 0.83751 0.97378 1.08430 1.23019 1.02807 0.87688 1.01049 1.24237 0.90237 0.91606 1.06942 1.98431 1.97383 1.00797 1.95739 1.73856 1.24081 0.90582 1.16700 1.85257 1.24595 1.18552 1.65931 1.22005 0.78056 1.01556 0.99425 1.22424 1.01761 0.97971 0.96104 1.20466 0.91218 0.91086 0.90944 0.93105 1.42578 1.18325 1.64156 1.11452 1.19549 0.94394 1.25062 0.96683 0.90704 1.25325 1.01561 1.03255 0.96142 1.69789 1.39506 1.49757 1.02765 0.85342 0.81128 0.78401 0.76090 1.22112 1.23042 1.19623 0.92814 0.92359 0.91707 0.93573 0.91936 0.88238 0.92239 0.76533 0.91856 0.88322 0.91249 0.90456 0.79178 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.67 71.98 0.70 -2.70 16 2 C -0.10 -3.03 5.19 30.59 0.16 -2.87 16 3 C -0.09 -2.66 2.12 -10.86 -0.02 -2.69 16 4 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 5 C 0.12 3.70 5.02 86.22 0.43 4.13 16 6 N -0.58 -17.03 2.98 -823.53 -2.45 -19.48 16 7 C 0.60 16.99 7.68 86.69 0.67 17.66 16 8 O -0.54 -16.83 16.34 -3.99 -0.07 -16.89 16 9 C -0.07 -1.76 6.90 24.38 0.17 -1.59 16 10 C -0.12 -2.46 10.97 22.71 0.25 -2.21 16 11 C 0.05 1.13 7.97 85.71 0.68 1.82 16 12 Cl 0.05 0.82 29.33 -2.72 -0.08 0.74 16 13 N -0.35 -8.91 12.05 -51.03 -0.61 -9.52 16 14 O 0.13 3.36 7.93 65.73 0.52 3.88 16 15 C 0.11 3.37 5.89 86.36 0.51 3.88 16 16 C -0.14 -4.25 5.78 30.67 0.18 -4.07 16 17 C 0.17 5.83 2.53 45.02 0.11 5.95 16 18 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 19 N -0.72 -31.96 3.72 -322.81 -1.20 -33.16 16 20 C -0.22 -11.37 9.93 84.03 0.83 -10.54 16 21 H 0.08 3.66 7.83 -2.91 -0.02 3.63 16 22 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.97 -56.32 13.06 21.65 0.28 -56.03 16 24 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.05 1.24 6.70 -2.39 -0.02 1.23 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.63 7.70 -2.39 -0.02 1.61 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.10 2.84 5.71 -2.39 -0.01 2.82 16 34 H 0.06 2.08 6.64 -2.39 -0.02 2.07 16 35 H 0.22 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.06 2.33 7.74 -2.38 -0.02 2.31 16 37 H 0.10 2.66 4.26 -12.96 -0.06 2.61 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.37 18.05 5.95 -92.71 -0.55 17.49 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -59.62 347.26 4.03 -55.59 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.48 Total: 24.84 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.13 Total: 3.42 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -3.99 Total: -118.19 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.46 Total: -13.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -0.08 Total: 0.74 kcal Total: -59.62 4.03 -55.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037954660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.768 kcal (2) G-P(sol) polarization free energy of solvation -59.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds