Wall clock time and date at job start Tue Mar 31 2020 15:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00029 * 2 1 4 4 O 1.21696 * 120.00152 * 185.62948 * 3 2 1 5 5 C 1.46674 * 119.99844 * 5.63363 * 3 2 1 6 6 C 1.37884 * 126.22559 * 358.61820 * 5 3 2 7 7 C 1.39888 * 107.09767 * 179.97438 * 6 5 3 8 8 Cl 1.73605 * 126.07542 * 180.02562 * 7 6 5 9 9 C 1.35514 * 107.84914 * 0.02562 * 7 6 5 10 10 N 1.35629 * 108.85270 * 0.22768 * 9 7 6 11 11 C 1.46495 * 125.67451 * 179.77455 * 10 9 7 12 12 C 1.46497 * 120.00157 * 180.02562 * 2 1 3 13 13 H 1.09001 * 110.89171 * 177.56924 * 12 2 1 14 14 C 1.54908 * 111.00527 * 301.45394 * 12 2 1 15 15 N 1.47429 * 104.83555 * 155.08090 * 14 12 2 16 16 C 1.36927 * 125.65012 * 155.83627 * 15 14 12 17 17 H 1.07998 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00039 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00148 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 89.99856 * 20 18 16 22 22 H 1.48501 * 109.46974 * 209.99807 * 20 18 16 23 23 H 1.48500 * 109.47242 * 330.00155 * 20 18 16 24 24 C 1.47025 * 108.69723 * 335.87371 * 15 14 12 25 25 C 1.54315 * 107.27547 * 1.05776 * 24 15 14 26 26 H 1.09005 * 110.71939 * 263.82992 * 25 24 15 27 27 O 1.42903 * 110.72339 * 140.55894 * 25 24 15 28 28 H 1.09002 * 109.46852 * 66.08395 * 1 2 3 29 29 H 1.08998 * 109.47448 * 186.08257 * 1 2 3 30 30 H 1.09002 * 109.47015 * 306.08723 * 1 2 3 31 31 H 1.08005 * 126.45384 * 359.97438 * 6 5 3 32 32 H 1.08002 * 125.56928 * 179.97438 * 9 7 6 33 33 H 1.08997 * 109.47531 * 84.94466 * 11 10 9 34 34 H 1.08998 * 109.47263 * 204.95018 * 11 10 9 35 35 H 1.09009 * 109.47435 * 324.94720 * 11 10 9 36 36 H 1.08996 * 110.36669 * 273.92008 * 14 12 2 37 37 H 1.09006 * 110.36506 * 36.13394 * 14 12 2 38 38 H 0.97001 * 120.00389 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.87665 * 120.47725 * 24 15 14 40 40 H 1.09004 * 109.88081 * 241.47996 * 24 15 14 41 41 H 0.96700 * 114.00182 * 66.47425 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1698 -0.1034 5 6 1.4108 2.4343 0.1247 6 6 0.0433 2.5823 0.2219 7 6 -0.2158 3.9532 0.3233 8 17 -1.7811 4.6895 0.4702 9 6 0.9720 4.6043 0.2866 10 7 1.9680 3.6924 0.1606 11 6 3.3990 3.9957 0.0802 12 6 2.1975 -1.2687 -0.0006 13 1 3.2730 -1.0965 -0.0437 14 6 1.8216 -2.1274 1.2327 15 7 2.0991 -3.5165 0.8241 16 6 2.3697 -4.5584 1.6705 17 1 2.3920 -4.3953 2.7378 18 6 2.6155 -5.8242 1.1565 19 7 2.5879 -6.0232 -0.1443 20 14 2.9854 -7.2454 2.3111 21 1 1.7169 -7.9174 2.6912 22 1 3.8759 -8.2185 1.6288 23 1 3.6574 -6.7302 3.5309 24 6 2.0380 -3.5976 -0.6426 25 6 1.7321 -2.1791 -1.1676 26 1 0.6642 -2.0572 -1.3495 27 8 2.4826 -1.9056 -2.3525 28 1 -0.3633 0.4166 -0.9395 29 1 -0.3634 -1.0218 0.1089 30 1 -0.3633 0.6053 0.8305 31 1 -0.6897 1.7891 0.2200 32 1 1.1037 5.6748 0.3437 33 1 3.8063 4.0958 1.0862 34 1 3.9128 3.1881 -0.4412 35 1 3.5426 4.9290 -0.4644 36 1 2.4388 -1.8532 2.0882 37 1 0.7655 -2.0047 1.4728 38 1 2.7600 -6.9077 -0.5035 39 1 2.9957 -3.9396 -1.0351 40 1 1.2475 -4.2852 -0.9432 41 1 2.2304 -2.4485 -3.1119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047451873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:31 Heat of formation + Delta-G solvation = -1.184088 kcal Electronic energy + Delta-G solvation = -26152.394687 eV Core-core repulsion = 22288.535766 eV Total energy + Delta-G solvation = -3863.858921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63900 -40.86387 -39.23010 -37.32759 -36.78430 -36.56706 -34.13483 -33.44391 -31.21435 -29.83821 -28.90595 -28.36181 -27.16482 -26.36619 -23.80764 -22.29673 -21.97256 -21.17937 -20.43195 -19.02139 -18.58392 -18.18273 -17.54085 -17.01374 -16.86091 -16.49564 -15.85376 -15.74161 -15.59647 -15.05666 -14.99745 -14.54781 -14.50812 -14.27722 -14.19779 -13.94799 -13.79267 -13.69797 -13.25306 -13.17132 -13.02961 -12.74931 -12.66209 -12.38450 -12.26430 -12.08231 -11.88811 -11.74949 -11.56255 -11.06855 -10.89142 -10.76950 -9.82555 -9.69425 -9.24492 -8.96374 -7.88129 -5.26021 0.32181 1.14049 1.45456 1.46675 1.48775 1.55596 1.58353 2.18308 2.27011 2.48738 3.11239 3.33076 3.43792 3.56882 3.82986 3.90517 4.02756 4.05377 4.07477 4.21519 4.26324 4.36343 4.40011 4.46890 4.53835 4.60960 4.73894 4.74912 4.81594 4.96418 5.01917 5.34062 5.38197 5.43532 5.50761 5.65877 5.71239 6.04771 6.12596 6.28629 6.84227 6.99948 7.04121 7.68838 8.31314 9.21456 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.002878 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.822366 B = 9728.203784 C =10054.740292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.583 5.583 3 C 0.582 3.418 4 O -0.585 6.585 5 C -0.061 4.061 6 C -0.140 4.140 7 C -0.142 4.142 8 Cl -0.043 7.043 9 C 0.049 3.951 10 N -0.409 5.409 11 C 0.061 3.939 12 C 0.149 3.851 13 H 0.080 0.920 14 C 0.134 3.866 15 N -0.620 5.620 16 C -0.246 4.246 17 H 0.086 0.914 18 C -0.062 4.062 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.164 3.836 25 C 0.085 3.915 26 H 0.089 0.911 27 O -0.572 6.572 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.193 0.807 32 H 0.211 0.789 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.249 0.751 39 H 0.018 0.982 40 H 0.026 0.974 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 23.033 -1.165 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.313 5.313 3 C 0.374 3.626 4 O -0.468 6.468 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.175 4.175 8 Cl -0.015 7.015 9 C -0.089 4.089 10 N -0.081 5.081 11 C -0.079 4.079 12 C 0.044 3.956 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.104 0.896 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.038 3.962 25 C 0.025 3.975 26 H 0.107 0.893 27 O -0.379 6.379 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.210 0.790 32 H 0.228 0.772 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.949 23.355 -0.858 24.382 hybrid contribution 0.167 -1.602 0.010 1.611 sum -6.782 21.753 -0.848 22.801 Atomic orbital electron populations 1.22838 0.77227 1.05053 1.03936 1.47307 1.08322 1.03843 1.71860 1.17292 0.86015 0.83304 0.76032 1.90749 1.15361 1.87541 1.53113 1.19712 0.92563 0.85491 1.19597 1.22609 0.93558 0.96820 1.03641 1.20087 0.87204 0.93194 1.17002 1.98327 1.23985 1.82108 1.97078 1.22309 0.85034 0.96774 1.04777 1.44013 1.08311 1.04348 1.51468 1.22499 0.75834 1.04695 1.04895 1.21933 0.96905 0.82073 0.94698 0.90196 1.21899 0.99151 0.83649 0.94536 1.44489 1.83407 1.04422 1.02480 1.19458 1.40907 0.87418 0.89713 0.89634 1.25666 1.02058 1.00109 0.97678 1.70140 1.56452 1.21694 1.11455 0.85045 0.77537 0.78685 0.77829 1.20788 1.22195 1.19554 1.21594 0.98756 0.92099 0.83773 1.23336 0.95119 0.94045 0.85028 0.89297 1.86468 1.64503 1.65193 1.21734 0.89515 0.89493 0.87876 0.79026 0.77185 0.89474 0.89871 0.86274 0.94010 0.92832 0.94210 0.96416 0.95537 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 7.32 127.77 0.93 1.97 16 2 N -0.58 -17.77 2.91 -819.54 -2.38 -20.16 16 3 C 0.58 18.88 7.64 86.45 0.66 19.54 16 4 O -0.59 -23.12 13.95 -4.33 -0.06 -23.18 16 5 C -0.06 -1.53 6.83 40.35 0.28 -1.25 16 6 C -0.14 -2.84 8.87 22.59 0.20 -2.64 16 7 C -0.14 -2.58 6.66 22.04 0.15 -2.44 16 8 Cl -0.04 -0.70 29.30 -2.72 -0.08 -0.78 16 9 C 0.05 0.77 11.36 83.48 0.95 1.72 16 10 N -0.41 -8.43 3.16 -534.18 -1.69 -10.12 16 11 C 0.06 1.03 10.73 127.77 1.37 2.40 16 12 C 0.15 5.71 3.14 46.38 0.15 5.85 16 13 H 0.08 3.68 7.02 -2.39 -0.02 3.66 16 14 C 0.13 5.48 6.76 86.85 0.59 6.07 16 15 N -0.62 -31.65 3.39 -691.99 -2.35 -34.00 16 16 C -0.25 -13.69 10.28 84.04 0.86 -12.83 16 17 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 19 N -0.95 -56.15 10.31 21.65 0.22 -55.93 16 20 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.16 7.97 5.15 86.73 0.45 8.41 16 25 C 0.09 3.21 3.82 31.78 0.12 3.33 16 26 H 0.09 2.82 6.65 -2.38 -0.02 2.80 16 27 O -0.57 -21.05 13.39 -148.98 -1.99 -23.05 16 28 H 0.09 1.48 7.40 -2.39 -0.02 1.46 16 29 H 0.09 1.80 6.04 -2.39 -0.01 1.79 16 30 H 0.10 1.72 5.41 -2.39 -0.01 1.70 16 31 H 0.19 3.09 4.05 -2.91 -0.01 3.08 16 32 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.98 6.03 -2.39 -0.01 1.97 16 35 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.94 6.67 -2.38 -0.02 1.93 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.02 1.00 7.30 -2.39 -0.02 0.98 16 40 H 0.03 1.39 7.50 -2.38 -0.02 1.37 16 41 H 0.39 10.93 9.12 -74.06 -0.68 10.25 16 Total: -1.00 -75.43 343.13 1.28 -74.16 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.42 Total: 18.60 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 7.17 Total: 27.13 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.20 Total: -120.21 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.05 Total: -46.23 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -75.43 1.28 -74.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047451873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.975 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds