Wall clock time and date at job start Tue Mar 31 2020 15:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35630 * 125.67785 * 2 1 4 4 C 1.35522 * 108.85697 * 179.89231 * 3 2 1 5 5 Cl 1.73595 * 126.07594 * 180.12164 * 4 3 2 6 6 C 1.39890 * 107.84522 * 0.37265 * 4 3 2 7 7 C 1.37643 * 125.68030 * 180.31357 * 2 1 3 8 8 C 1.46672 * 126.21853 * 359.93807 * 7 2 1 9 9 O 1.21695 * 119.99915 * 5.05969 * 8 7 2 10 10 N 1.34773 * 119.99658 * 185.06366 * 8 7 2 11 11 C 1.46499 * 119.99528 * 185.21648 * 10 8 7 12 12 C 1.53006 * 109.47091 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.68124 * 300.76830 * 12 11 10 14 14 C 1.53291 * 109.68486 * 180.24268 * 12 11 10 15 15 O 1.42960 * 109.22303 * 187.97709 * 14 12 11 16 16 C 1.42960 * 114.16740 * 62.58656 * 15 14 12 17 17 C 1.53303 * 109.21922 * 297.41564 * 16 15 14 18 18 N 1.47155 * 109.67931 * 61.28180 * 12 11 10 19 19 C 1.36946 * 120.97890 * 350.23572 * 18 12 11 20 20 H 1.07994 * 119.99983 * 31.53873 * 19 18 12 21 21 C 1.38812 * 119.99544 * 211.53483 * 19 18 12 22 22 N 1.31619 * 120.00535 * 9.83687 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 189.82969 * 21 19 18 24 24 H 1.48499 * 109.46820 * 90.00476 * 23 21 19 25 25 H 1.48500 * 109.46967 * 210.00250 * 23 21 19 26 26 H 1.48501 * 109.47123 * 330.00663 * 23 21 19 27 27 H 1.08999 * 109.46902 * 263.84719 * 1 2 3 28 28 H 1.09004 * 109.47455 * 143.84674 * 1 2 3 29 29 H 1.09002 * 109.47653 * 23.84815 * 1 2 3 30 30 H 1.08009 * 125.57156 * 0.04064 * 3 2 1 31 31 H 1.08002 * 126.44753 * 179.81333 * 6 4 3 32 32 H 0.96993 * 120.00297 * 5.21300 * 10 8 7 33 33 H 1.08997 * 109.47595 * 299.99543 * 11 10 8 34 34 H 1.09001 * 109.47260 * 59.99959 * 11 10 8 35 35 H 1.09000 * 109.51680 * 307.90563 * 14 12 11 36 36 H 1.09004 * 109.50987 * 68.00579 * 14 12 11 37 37 H 1.08996 * 109.51584 * 57.33768 * 16 15 14 38 38 H 1.08997 * 109.51263 * 177.49841 * 16 15 14 39 39 H 1.09003 * 109.67517 * 172.02524 * 17 16 15 40 40 H 1.08998 * 109.68150 * 292.58024 * 17 16 15 41 41 H 0.96998 * 120.00630 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2559 1.1017 0.0000 4 6 3.5532 0.7096 0.0024 5 17 4.9377 1.7568 0.0064 6 6 3.5782 -0.6891 -0.0047 7 6 2.2677 -1.1180 -0.0061 8 6 1.8120 -2.5122 -0.0125 9 8 0.6250 -2.7639 -0.1056 10 7 2.7079 -3.5143 0.0849 11 6 2.2662 -4.9059 -0.0361 12 6 3.4707 -5.8379 0.1103 13 1 4.2058 -5.6118 -0.6621 14 6 3.0149 -7.2955 -0.0217 15 8 4.1064 -8.1610 0.2998 16 6 4.5761 -8.0359 1.6442 17 6 5.1121 -6.6162 1.8615 18 7 4.0771 -5.6590 1.4391 19 6 3.6894 -4.6325 2.2584 20 1 2.6733 -4.2685 2.2241 21 6 4.6027 -4.0598 3.1330 22 7 5.8801 -4.3643 3.0432 23 14 4.0189 -2.8568 4.4374 24 1 3.6740 -3.5992 5.6764 25 1 5.0992 -1.8808 4.7296 26 1 2.8193 -2.1344 3.9431 27 1 -0.3633 -0.1101 1.0217 28 1 -0.3634 -0.8298 -0.6063 29 1 -0.3634 0.9399 -0.4155 30 1 1.9088 2.1245 0.0006 31 1 4.4583 -1.3151 -0.0077 32 1 3.6450 -3.3143 0.2351 33 1 1.5392 -5.1257 0.7457 34 1 1.8065 -5.0575 -1.0127 35 1 2.1882 -7.4820 0.6639 36 1 2.6890 -7.4838 -1.0447 37 1 3.7552 -8.2250 2.3358 38 1 5.3744 -8.7571 1.8195 39 1 5.3408 -6.4677 2.9169 40 1 6.0129 -6.4686 1.2658 41 1 6.5183 -3.9639 3.6541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051013984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:36 Heat of formation + Delta-G solvation = -22.934287 kcal Electronic energy + Delta-G solvation = -26641.762454 eV Core-core repulsion = 22776.960373 eV Total energy + Delta-G solvation = -3864.802080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48443 -40.55389 -39.63904 -37.38440 -36.93153 -35.38870 -33.91252 -33.15011 -32.18764 -30.44379 -28.95414 -27.42234 -26.97001 -25.23064 -23.93166 -22.98211 -21.60597 -21.41176 -20.63482 -19.19159 -18.31907 -17.58455 -17.35094 -16.82898 -16.67773 -16.34358 -16.23057 -15.96635 -15.41880 -15.29470 -15.14315 -14.93959 -14.78046 -14.48838 -14.30236 -13.90621 -13.80187 -13.53654 -13.15638 -13.11659 -12.89439 -12.75383 -12.50493 -12.40754 -12.14573 -11.99319 -11.86228 -11.85029 -11.29993 -11.07624 -10.64130 -10.56272 -9.98583 -9.71542 -9.23811 -8.60367 -7.87148 -5.37880 0.35757 1.12998 1.38540 1.42787 1.44448 1.48454 1.76411 2.30510 2.43030 2.54138 3.05491 3.29689 3.45273 3.74906 3.90704 4.00514 4.04159 4.23197 4.24465 4.34718 4.38206 4.49400 4.58147 4.59628 4.65959 4.67672 4.72897 4.75379 4.91754 5.02570 5.13115 5.31894 5.35112 5.53146 5.65481 5.69108 5.70124 6.07398 6.31329 6.38588 6.60780 7.11847 7.19508 7.77257 8.33152 9.17003 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.004613 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.133843 B = 6068.258680 C = 7039.773955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.407 5.407 3 C 0.051 3.949 4 C -0.144 4.144 5 Cl -0.048 7.048 6 C -0.133 4.133 7 C -0.057 4.057 8 C 0.582 3.418 9 O -0.586 6.586 10 N -0.684 5.684 11 C 0.144 3.856 12 C 0.125 3.875 13 H 0.038 0.962 14 C 0.058 3.942 15 O -0.397 6.397 16 C 0.047 3.953 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.239 4.239 20 H 0.067 0.933 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 0.939 3.061 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.219 0.781 31 H 0.144 0.856 32 H 0.412 0.588 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.044 0.956 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.007 0.993 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 7.201 -7.608 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.079 5.079 3 C -0.087 4.087 4 C -0.176 4.176 5 Cl -0.020 7.020 6 C -0.160 4.160 7 C -0.171 4.171 8 C 0.370 3.630 9 O -0.470 6.470 10 N -0.333 5.333 11 C 0.020 3.980 12 C 0.018 3.982 13 H 0.056 0.944 14 C -0.020 4.020 15 O -0.316 6.316 16 C -0.031 4.031 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.369 4.369 20 H 0.084 0.916 21 C -0.223 4.223 22 N -0.568 5.568 23 Si 0.770 3.230 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.207 1.207 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.236 0.764 31 H 0.162 0.838 32 H 0.250 0.750 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.653 6.972 -7.723 13.532 hybrid contribution 0.796 0.969 1.437 1.907 sum -7.857 7.940 -6.286 12.818 Atomic orbital electron populations 1.22474 0.73628 1.06509 1.04601 1.44018 1.08100 1.04045 1.51742 1.22282 0.87997 0.93234 1.05195 1.20017 0.89021 0.90856 1.17750 1.98308 1.40891 1.65042 1.97766 1.21367 0.95443 0.94288 1.04852 1.19955 0.90180 0.88294 1.18641 1.17038 0.85376 0.83987 0.76633 1.90700 1.16702 1.85388 1.54227 1.45722 1.11968 1.05580 1.70040 1.21188 0.96030 0.79495 1.01241 1.21583 0.93622 0.94715 0.88242 0.94419 1.22982 0.88410 0.88631 1.02001 1.87806 1.51876 1.61452 1.30446 1.23212 0.98749 0.98241 0.82926 1.21253 0.89778 0.86903 0.99753 1.44273 1.45140 1.30450 1.13161 1.19205 0.93639 1.09203 1.14874 0.91565 1.25527 0.95054 0.99589 1.02137 1.70066 1.01041 1.46729 1.38992 0.85697 0.77109 0.79595 0.80620 1.21683 1.22067 1.20739 0.90428 0.89377 0.85456 0.76414 0.83807 0.75033 0.92711 0.89565 0.93144 0.86289 0.93804 0.87832 0.91604 0.97509 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.48 127.77 1.34 2.68 16 2 N -0.41 -10.82 3.16 -534.17 -1.69 -12.51 16 3 C 0.05 1.16 11.35 83.48 0.95 2.11 16 4 C -0.14 -4.08 6.66 22.04 0.15 -3.93 16 5 Cl -0.05 -1.27 29.30 -2.72 -0.08 -1.35 16 6 C -0.13 -4.41 10.34 22.59 0.23 -4.17 16 7 C -0.06 -1.92 6.88 40.35 0.28 -1.64 16 8 C 0.58 21.71 7.77 86.45 0.67 22.38 16 9 O -0.59 -23.19 14.78 -4.33 -0.06 -23.25 16 10 N -0.68 -25.65 3.78 -467.08 -1.77 -27.42 16 11 C 0.14 5.05 4.45 86.38 0.38 5.43 16 12 C 0.12 4.62 3.20 44.97 0.14 4.77 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 14 C 0.06 1.86 6.29 72.08 0.45 2.32 16 15 O -0.40 -14.29 10.74 -148.98 -1.60 -15.89 16 16 C 0.05 1.70 6.99 72.08 0.50 2.21 16 17 C 0.15 6.72 5.37 86.35 0.46 7.18 16 18 N -0.60 -27.35 3.03 -673.68 -2.04 -29.39 16 19 C -0.24 -11.82 7.09 84.03 0.60 -11.23 16 20 H 0.07 3.36 5.83 -2.91 -0.02 3.34 16 21 C -0.03 -1.35 5.08 84.86 0.43 -0.92 16 22 N -0.92 -50.66 11.11 21.65 0.24 -50.42 16 23 Si 0.94 44.27 29.56 68.60 2.03 46.29 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.09 6.56 -2.39 -0.02 2.07 16 29 H 0.13 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.22 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.14 4.98 7.49 -2.91 -0.02 4.96 16 32 H 0.41 16.59 6.32 -92.71 -0.59 16.00 16 33 H 0.05 2.10 7.53 -2.39 -0.02 2.08 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.07 3.33 6.33 -2.39 -0.02 3.32 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -63.74 348.41 2.09 -61.64 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.48 Total: 25.13 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 6.59 Total: 27.17 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.26 Total: -119.74 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.66 Total: -39.14 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -63.74 2.09 -61.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051013984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds