Wall clock time and date at job start Tue Mar 31 2020 15:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35630 * 125.67623 * 2 1 4 4 C 1.35516 * 108.84994 * 180.23584 * 3 2 1 5 5 Cl 1.73605 * 126.07434 * 179.79051 * 4 3 2 6 6 C 1.39892 * 107.85434 * 359.76666 * 4 3 2 7 7 C 1.37642 * 125.67394 * 179.83179 * 2 1 3 8 8 C 1.46667 * 126.22124 * 0.03595 * 7 2 1 9 9 O 1.21688 * 120.00354 * 4.55610 * 8 7 2 10 10 N 1.34781 * 119.99587 * 184.55536 * 8 7 2 11 11 C 1.46497 * 119.99967 * 174.85742 * 10 8 7 12 12 C 1.52999 * 109.47344 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.67334 * 59.92447 * 12 11 10 14 14 C 1.53297 * 109.71296 * 180.45984 * 12 11 10 15 15 O 1.42968 * 109.21979 * 172.04465 * 14 12 11 16 16 C 1.42960 * 114.16923 * 297.42115 * 15 14 12 17 17 C 1.52881 * 109.29602 * 62.44701 * 16 15 14 18 18 N 1.47144 * 108.61034 * 307.93692 * 17 16 15 19 19 C 1.36943 * 120.98122 * 230.50310 * 18 17 16 20 20 H 1.07999 * 120.00021 * 147.93016 * 19 18 17 21 21 C 1.38809 * 119.99841 * 327.92206 * 19 18 17 22 22 N 1.31621 * 120.00330 * 349.93112 * 21 19 18 23 23 Si 1.86806 * 119.99929 * 169.92423 * 21 19 18 24 24 H 1.48499 * 109.46817 * 270.00242 * 23 21 19 25 25 H 1.48491 * 109.46894 * 30.00087 * 23 21 19 26 26 H 1.48498 * 109.47042 * 150.00238 * 23 21 19 27 27 H 1.09006 * 109.46929 * 273.52402 * 1 2 3 28 28 H 1.08998 * 109.47286 * 33.52609 * 1 2 3 29 29 H 1.09003 * 109.47564 * 153.52225 * 1 2 3 30 30 H 1.08000 * 125.57636 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.45489 * 180.02562 * 6 4 3 32 32 H 0.96997 * 120.00139 * 354.86200 * 10 8 7 33 33 H 1.09004 * 109.46939 * 60.00380 * 11 10 8 34 34 H 1.08995 * 109.47055 * 300.00432 * 11 10 8 35 35 H 1.09000 * 109.51469 * 291.96806 * 14 12 11 36 36 H 1.08999 * 109.51300 * 52.12370 * 14 12 11 37 37 H 1.08992 * 109.51137 * 182.50883 * 16 15 14 38 38 H 1.09003 * 109.51013 * 302.65866 * 16 15 14 39 39 H 1.09006 * 109.61385 * 188.11281 * 17 16 15 40 40 H 1.08997 * 109.52013 * 67.70746 * 17 16 15 41 41 H 0.96999 * 120.00076 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1018 0.0000 4 6 3.5531 0.7095 -0.0053 5 17 4.9377 1.7567 -0.0125 6 6 3.5782 -0.6892 -0.0033 7 6 2.2677 -1.1181 0.0033 8 6 1.8119 -2.5122 0.0066 9 8 0.6244 -2.7643 -0.0770 10 7 2.7084 -3.5140 0.1024 11 6 2.2484 -4.9000 0.2193 12 6 3.4577 -5.8327 0.3112 13 1 4.0551 -5.5740 1.1854 14 6 2.9826 -7.2859 0.4222 15 8 4.1103 -8.1589 0.3207 16 6 4.7976 -8.0841 -0.9306 17 6 5.3620 -6.6751 -1.1136 18 7 4.2767 -5.7037 -0.9045 19 6 4.0324 -4.7124 -1.8172 20 1 3.0247 -4.3551 -1.9696 21 6 5.0800 -4.1668 -2.5463 22 7 6.3241 -4.4541 -2.2268 23 14 4.7241 -3.0247 -3.9811 24 1 4.5987 -3.8211 -5.2283 25 1 3.4554 -2.2951 -3.7301 26 1 5.8353 -2.0503 -4.1256 27 1 -0.3633 0.0632 1.0258 28 1 -0.3634 0.8567 -0.5676 29 1 -0.3634 -0.9199 -0.4582 30 1 1.9089 2.1245 0.0004 31 1 4.4582 -1.3152 -0.0060 32 1 3.6582 -3.3173 0.0939 33 1 1.6547 -5.1608 -0.6569 34 1 1.6384 -5.0058 1.1163 35 1 2.4914 -7.4360 1.3836 36 1 2.2811 -7.5022 -0.3836 37 1 5.6120 -8.8084 -0.9425 38 1 4.1026 -8.3033 -1.7413 39 1 5.7606 -6.5688 -2.1226 40 1 6.1544 -6.5028 -0.3854 41 1 7.0561 -4.0731 -2.7366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051013985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:39 Heat of formation + Delta-G solvation = -22.330962 kcal Electronic energy + Delta-G solvation = -26662.294985 eV Core-core repulsion = 22797.519066 eV Total energy + Delta-G solvation = -3864.775918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48810 -40.56144 -39.64704 -37.38690 -36.93874 -35.38292 -33.91189 -33.14441 -32.20734 -30.44715 -28.96671 -27.41318 -26.96522 -25.23392 -23.92683 -22.98383 -21.59781 -21.40563 -20.64672 -19.18389 -18.31206 -17.59447 -17.33944 -16.84469 -16.64319 -16.34389 -16.23222 -15.97817 -15.42600 -15.27725 -15.15951 -14.93003 -14.78377 -14.50090 -14.33632 -13.90189 -13.78277 -13.53884 -13.15827 -13.10529 -12.89173 -12.75395 -12.50311 -12.40065 -12.14148 -11.98872 -11.86429 -11.85192 -11.29427 -11.05440 -10.64321 -10.56110 -9.98323 -9.70917 -9.24050 -8.59714 -7.87149 -5.38162 0.35362 1.13305 1.38973 1.42301 1.45574 1.49486 1.76985 2.29213 2.43291 2.54585 3.05370 3.29703 3.45358 3.75520 3.90485 4.00449 4.04293 4.23649 4.25262 4.34821 4.40560 4.49528 4.58560 4.60021 4.66212 4.67560 4.74472 4.75947 4.92827 5.02521 5.12997 5.31575 5.35270 5.53550 5.65036 5.69312 5.70270 6.07890 6.31448 6.38585 6.60912 7.11964 7.19603 7.77245 8.33429 9.17022 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.004701 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.672778 B = 5954.973416 C = 7097.689395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.405 5.405 3 C 0.052 3.948 4 C -0.144 4.144 5 Cl -0.050 7.050 6 C -0.134 4.134 7 C -0.056 4.056 8 C 0.582 3.418 9 O -0.586 6.586 10 N -0.684 5.684 11 C 0.144 3.856 12 C 0.125 3.875 13 H 0.038 0.962 14 C 0.058 3.942 15 O -0.397 6.397 16 C 0.047 3.953 17 C 0.149 3.851 18 N -0.604 5.604 19 C -0.240 4.240 20 H 0.067 0.933 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 0.937 3.063 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.294 1.294 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.141 0.859 32 H 0.412 0.588 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.007 0.993 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 7.386 6.284 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.078 5.078 3 C -0.086 4.086 4 C -0.177 4.177 5 Cl -0.021 7.021 6 C -0.161 4.161 7 C -0.170 4.170 8 C 0.370 3.630 9 O -0.470 6.470 10 N -0.333 5.333 11 C 0.020 3.980 12 C 0.018 3.982 13 H 0.056 0.944 14 C -0.020 4.020 15 O -0.316 6.316 16 C -0.031 4.031 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.370 4.370 20 H 0.084 0.916 21 C -0.221 4.221 22 N -0.567 5.567 23 Si 0.768 3.232 24 H -0.217 1.217 25 H -0.206 1.206 26 H -0.220 1.220 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.236 0.764 31 H 0.159 0.841 32 H 0.250 0.750 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.898 7.162 6.322 13.756 hybrid contribution 1.049 0.917 -1.358 1.946 sum -8.848 8.079 4.964 12.969 Atomic orbital electron populations 1.22562 0.73554 1.06353 1.05311 1.44018 1.08121 1.03939 1.51685 1.22259 0.87904 0.93273 1.05167 1.20022 0.89044 0.90795 1.17803 1.98308 1.40987 1.65052 1.97769 1.21366 0.95491 0.94322 1.04927 1.19929 0.90091 0.88327 1.18625 1.17029 0.85385 0.83976 0.76614 1.90681 1.16901 1.85298 1.54119 1.45747 1.10465 1.05923 1.71147 1.21189 0.95708 0.79650 1.01417 1.21580 0.91779 0.94811 0.89989 0.94446 1.22988 0.87656 0.88499 1.02885 1.87810 1.44593 1.62332 1.36844 1.23134 0.96356 0.98316 0.85302 1.21150 0.89486 0.86862 1.00167 1.44246 1.36466 1.32076 1.20210 1.19200 0.91990 1.11684 1.14162 0.91579 1.25521 0.95325 0.99578 1.01725 1.70071 0.98014 1.47567 1.41033 0.85729 0.76941 0.79375 0.81205 1.21738 1.20629 1.22000 0.88802 0.86351 0.89466 0.76385 0.84130 0.74989 0.92692 0.89537 0.86284 0.93126 0.87799 0.93832 0.91724 0.97530 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 10.73 127.77 1.37 2.56 16 2 N -0.41 -10.69 3.16 -534.16 -1.69 -12.38 16 3 C 0.05 1.18 11.36 83.48 0.95 2.13 16 4 C -0.14 -4.15 6.66 22.04 0.15 -4.00 16 5 Cl -0.05 -1.33 29.30 -2.72 -0.08 -1.41 16 6 C -0.13 -4.56 10.35 22.59 0.23 -4.33 16 7 C -0.06 -1.89 6.89 40.35 0.28 -1.62 16 8 C 0.58 21.74 7.77 86.44 0.67 22.41 16 9 O -0.59 -23.11 14.59 -4.31 -0.06 -23.18 16 10 N -0.68 -25.71 3.77 -467.10 -1.76 -27.47 16 11 C 0.14 5.04 4.46 86.38 0.38 5.43 16 12 C 0.12 4.62 3.21 44.97 0.14 4.77 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C 0.06 1.86 6.29 72.08 0.45 2.31 16 15 O -0.40 -14.28 10.74 -148.98 -1.60 -15.88 16 16 C 0.05 1.71 6.97 71.94 0.50 2.21 16 17 C 0.15 6.72 5.34 86.22 0.46 7.18 16 18 N -0.60 -27.31 3.03 -674.54 -2.05 -29.36 16 19 C -0.24 -11.86 7.03 84.03 0.59 -11.27 16 20 H 0.07 3.35 5.84 -2.91 -0.02 3.33 16 21 C -0.02 -1.26 5.07 84.86 0.43 -0.83 16 22 N -0.92 -50.49 11.16 21.65 0.24 -50.25 16 23 Si 0.94 44.21 29.57 68.60 2.03 46.24 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 2.20 6.04 -2.39 -0.01 2.18 16 30 H 0.22 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.14 5.14 7.45 -2.91 -0.02 5.12 16 32 H 0.41 16.69 6.22 -92.71 -0.58 16.12 16 33 H 0.05 2.10 7.56 -2.38 -0.02 2.08 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 3.26 6.38 -2.38 -0.02 3.25 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -63.51 347.89 2.13 -61.37 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.49 Total: 25.34 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 6.61 Total: 26.96 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -5.25 Total: -119.45 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.66 Total: -39.06 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -63.51 2.13 -61.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051013985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.041 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds