Wall clock time and date at job start Tue Mar 31 2020 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.28524 * 2 1 4 4 C 1.53998 * 110.32659 * 237.86753 * 2 1 3 5 5 N 1.47489 * 107.07910 * 242.31014 * 4 2 1 6 6 C 1.34784 * 127.03112 * 154.51764 * 5 4 2 7 7 O 1.21574 * 119.99695 * 180.02562 * 6 5 4 8 8 C 1.47514 * 119.99938 * 359.74732 * 6 5 4 9 9 C 1.36782 * 126.92787 * 179.70777 * 8 6 5 10 10 C 1.41410 * 103.84036 * 179.97438 * 9 8 6 11 11 Cl 1.73599 * 126.72731 * 180.11665 * 10 9 8 12 12 N 1.30224 * 106.54939 * 0.34110 * 10 9 8 13 13 O 1.20886 * 111.95825 * 359.77787 * 12 10 9 14 14 C 1.48109 * 105.93444 * 334.77841 * 5 4 2 15 15 C 1.54601 * 103.42369 * 39.02441 * 14 5 4 16 16 H 1.09004 * 110.57290 * 81.16735 * 15 14 5 17 17 C 1.53000 * 110.83469 * 204.44458 * 15 14 5 18 18 C 1.52995 * 109.47242 * 288.56295 * 17 15 14 19 19 N 1.46499 * 109.47169 * 180.02562 * 18 17 15 20 20 C 1.36935 * 120.00298 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99949 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00235 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00139 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46930 * 90.00158 * 24 22 20 26 26 H 1.48496 * 109.47613 * 210.00083 * 24 22 20 27 27 H 1.48497 * 109.47147 * 330.00366 * 24 22 20 28 28 H 1.08999 * 109.47110 * 180.67923 * 1 2 3 29 29 H 1.09003 * 109.47545 * 300.68179 * 1 2 3 30 30 H 1.09004 * 109.46946 * 60.68320 * 1 2 3 31 31 H 1.08992 * 109.91574 * 122.95196 * 4 2 1 32 32 H 1.09000 * 109.91422 * 1.66820 * 4 2 1 33 33 H 1.08001 * 128.08275 * 0.03086 * 9 8 6 34 34 H 1.09004 * 110.66556 * 157.50830 * 14 5 4 35 35 H 1.09001 * 110.66523 * 280.62615 * 14 5 4 36 36 H 1.09003 * 109.47125 * 48.56450 * 17 15 14 37 37 H 1.08999 * 109.47091 * 168.56045 * 17 15 14 38 38 H 1.09003 * 109.47187 * 300.00117 * 18 17 15 39 39 H 1.08999 * 109.47281 * 59.99867 * 18 17 15 40 40 H 0.97001 * 119.99743 * 359.97438 * 19 18 17 41 41 H 0.97006 * 119.99884 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9202 -0.7101 6 6 3.0646 -3.0859 -1.3448 7 8 3.7156 -3.9551 -0.7983 8 6 2.5264 -3.3094 -2.6999 9 6 2.6814 -4.4280 -3.4716 10 6 1.9756 -4.1211 -4.6579 11 17 1.7886 -5.1432 -6.0486 12 7 1.4974 -2.9196 -4.5047 13 8 1.7892 -2.4506 -3.4294 14 6 3.2816 -1.5368 0.6472 15 6 2.0693 -0.7719 1.2263 16 1 1.3209 -1.4692 1.6031 17 6 2.5113 0.1968 2.3250 18 6 2.9216 -0.5949 3.5682 19 7 3.3443 0.3327 4.6204 20 6 3.7587 -0.1501 5.8329 21 1 3.7736 -1.2147 6.0138 22 6 4.1597 0.7289 6.8297 23 7 4.1410 2.0264 6.6095 24 14 4.7243 0.0703 8.4840 25 1 6.1899 -0.1668 8.4483 26 1 4.4089 1.0603 9.5449 27 1 4.0233 -1.2063 8.7740 28 1 -0.3633 -1.0276 0.0122 29 1 -0.3634 0.5244 0.8838 30 1 -0.3633 0.5032 -0.8961 31 1 2.7166 -0.1221 -1.8111 32 1 1.2334 -1.1173 -1.8349 33 1 3.2170 -5.3345 -3.2308 34 1 3.4981 -2.4222 1.2451 35 1 4.1541 -0.8856 0.5926 36 1 3.3590 0.7842 1.9721 37 1 1.6861 0.8637 2.5749 38 1 2.0739 -1.1822 3.9212 39 1 3.7468 -1.2618 3.3183 40 1 3.3312 1.2889 4.4579 41 1 4.4209 2.6406 7.3062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104935282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:54 Heat of formation + Delta-G solvation = 34.790334 kcal Electronic energy + Delta-G solvation = -24986.927173 eV Core-core repulsion = 21124.628220 eV Total energy + Delta-G solvation = -3862.298953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.70586 -40.45087 -38.39790 -37.66588 -35.25125 -34.30206 -33.52394 -32.48111 -32.12085 -30.23967 -27.56668 -26.74407 -24.99043 -24.16423 -23.58482 -22.46806 -21.05740 -20.62301 -20.18297 -18.51795 -18.36904 -17.13066 -16.91364 -16.42145 -15.95482 -15.48566 -14.79090 -14.68338 -14.48002 -14.33130 -13.84286 -13.52407 -13.31492 -13.28063 -13.19287 -13.10405 -12.95131 -12.54423 -12.28700 -11.79884 -11.62255 -11.44088 -11.26310 -11.04673 -10.83694 -10.69154 -10.64324 -10.61927 -10.47605 -10.35132 -10.32873 -9.98881 -9.67223 -9.06330 -8.86380 -6.91600 -5.76139 -3.04645 0.19771 0.88437 1.24614 1.96677 2.54390 2.63196 3.44550 3.49739 3.51301 3.60288 4.11274 4.13681 4.29573 4.41902 4.50252 4.60377 4.65046 4.97998 5.10598 5.18401 5.29024 5.30706 5.40068 5.50280 5.57315 5.66469 5.70162 5.71900 5.79899 5.97254 5.99179 6.08853 6.23990 6.35208 6.37165 6.82584 6.86203 6.99580 7.23814 7.55466 7.71156 8.43123 9.54179 10.12280 10.46511 11.46796 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.002081 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.229742 B =13452.647779 C =14194.524986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.093 0.907 4 C 0.096 3.904 5 N -0.605 5.605 6 C 0.619 3.381 7 O -0.506 6.506 8 C -0.060 4.060 9 C -0.138 4.138 10 C 0.052 3.948 11 Cl 0.034 6.966 12 N -0.329 5.329 13 O 0.138 5.862 14 C 0.110 3.890 15 C -0.092 4.092 16 H 0.086 0.914 17 C -0.115 4.115 18 C 0.151 3.849 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.195 0.805 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.383 0.617 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -9.236 -25.826 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.111 0.889 4 C -0.027 4.027 5 N -0.337 5.337 6 C 0.404 3.596 7 O -0.381 6.381 8 C -0.125 4.125 9 C -0.162 4.162 10 C -0.131 4.131 11 Cl 0.061 6.939 12 N -0.030 5.030 13 O 0.061 5.939 14 C -0.011 4.011 15 C -0.111 4.111 16 H 0.105 0.895 17 C -0.153 4.153 18 C 0.023 3.977 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.213 0.787 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.323 -9.221 -26.360 28.870 hybrid contribution 0.685 -0.701 0.864 1.307 sum -6.638 -9.922 -25.496 28.152 Atomic orbital electron populations 1.21854 0.93855 1.02070 1.02338 1.22170 0.96673 0.99933 0.93285 0.88909 1.22501 0.95857 0.87077 0.97234 1.48691 1.52375 1.14083 1.18578 1.15951 0.80536 0.81803 0.81337 1.90926 1.39889 1.42812 1.64505 1.24225 1.00485 0.91504 0.96332 1.22755 1.01729 1.01015 0.90653 1.24060 1.02697 0.92595 0.93724 1.98434 1.96459 1.62370 1.36590 1.73864 1.18202 1.10590 1.00297 1.85147 1.51805 1.37887 1.19063 1.22759 0.97522 1.00465 0.80377 1.22320 0.96770 0.97449 0.94606 0.89528 1.21728 1.01455 0.97598 0.94496 1.20686 0.96433 0.92832 0.87717 1.42359 1.79098 1.05141 1.11221 1.19238 1.35635 0.92142 0.89965 0.91190 1.24747 1.02483 0.95340 0.98563 1.69660 1.54266 1.00688 1.33692 0.86184 0.78498 0.77615 0.83870 1.21713 1.21788 1.20764 0.92606 0.91646 0.92399 0.90531 0.89926 0.78739 0.88860 0.89701 0.91470 0.91182 0.96434 0.96317 0.78321 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.90 37.16 0.33 -0.79 16 2 C -0.10 -0.87 3.17 -89.25 -0.28 -1.15 16 3 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 4 C 0.10 0.78 6.00 -2.98 -0.02 0.77 16 5 N -0.60 -6.34 3.29 -171.22 -0.56 -6.90 16 6 C 0.62 7.16 7.89 -12.48 -0.10 7.06 16 7 O -0.51 -7.37 17.12 5.30 0.09 -7.28 16 8 C -0.06 -0.58 7.09 -36.33 -0.26 -0.84 16 9 C -0.14 -1.19 10.96 -38.90 -0.43 -1.62 16 10 C 0.05 0.47 7.97 -17.03 -0.14 0.33 16 11 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 12 N -0.33 -3.29 12.05 32.82 0.40 -2.90 16 13 O 0.14 1.29 8.67 15.54 0.13 1.42 16 14 C 0.11 1.25 5.92 -2.32 -0.01 1.24 16 15 C -0.09 -1.00 2.58 -88.93 -0.23 -1.23 16 16 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 17 C -0.11 -1.61 4.70 -26.73 -0.13 -1.73 16 18 C 0.15 2.87 6.15 -4.04 -0.02 2.85 16 19 N -0.73 -18.31 5.60 -59.91 -0.34 -18.65 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 33 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.09 1.19 7.83 -51.93 -0.41 0.79 16 35 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 36 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.36 7.67 -51.93 -0.40 -0.04 16 40 H 0.38 9.98 7.67 -40.82 -0.31 9.66 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -31.94 360.46 -7.76 -39.70 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.57 Total: 2.94 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.53 Total: -2.49 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.22 Total: -55.87 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: 0.23 Total: -5.85 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.94 -7.76 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104935282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.490 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds