Wall clock time and date at job start Tue Mar 31 2020 15:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.28524 * 2 1 4 4 C 1.53998 * 110.32659 * 237.86753 * 2 1 3 5 5 N 1.47489 * 107.07910 * 242.31014 * 4 2 1 6 6 C 1.34784 * 127.03112 * 154.51764 * 5 4 2 7 7 O 1.21574 * 119.99695 * 180.02562 * 6 5 4 8 8 C 1.47514 * 119.99938 * 359.74732 * 6 5 4 9 9 C 1.36782 * 126.92787 * 179.70777 * 8 6 5 10 10 C 1.41410 * 103.84036 * 179.97438 * 9 8 6 11 11 Cl 1.73599 * 126.72731 * 180.11665 * 10 9 8 12 12 N 1.30224 * 106.54939 * 0.34110 * 10 9 8 13 13 O 1.20886 * 111.95825 * 359.77787 * 12 10 9 14 14 C 1.48109 * 105.93444 * 334.77841 * 5 4 2 15 15 C 1.54601 * 103.42369 * 39.02441 * 14 5 4 16 16 H 1.09004 * 110.57290 * 81.16735 * 15 14 5 17 17 C 1.53000 * 110.83469 * 204.44458 * 15 14 5 18 18 C 1.52995 * 109.47242 * 288.56295 * 17 15 14 19 19 N 1.46499 * 109.47169 * 180.02562 * 18 17 15 20 20 C 1.36935 * 120.00298 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99949 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00235 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00139 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46930 * 90.00158 * 24 22 20 26 26 H 1.48496 * 109.47613 * 210.00083 * 24 22 20 27 27 H 1.48497 * 109.47147 * 330.00366 * 24 22 20 28 28 H 1.08999 * 109.47110 * 180.67923 * 1 2 3 29 29 H 1.09003 * 109.47545 * 300.68179 * 1 2 3 30 30 H 1.09004 * 109.46946 * 60.68320 * 1 2 3 31 31 H 1.08992 * 109.91574 * 122.95196 * 4 2 1 32 32 H 1.09000 * 109.91422 * 1.66820 * 4 2 1 33 33 H 1.08001 * 128.08275 * 0.03086 * 9 8 6 34 34 H 1.09004 * 110.66556 * 157.50830 * 14 5 4 35 35 H 1.09001 * 110.66523 * 280.62615 * 14 5 4 36 36 H 1.09003 * 109.47125 * 48.56450 * 17 15 14 37 37 H 1.08999 * 109.47091 * 168.56045 * 17 15 14 38 38 H 1.09003 * 109.47187 * 300.00117 * 18 17 15 39 39 H 1.08999 * 109.47281 * 59.99867 * 18 17 15 40 40 H 0.97001 * 119.99743 * 359.97438 * 19 18 17 41 41 H 0.97006 * 119.99884 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9202 -0.7101 6 6 3.0646 -3.0859 -1.3448 7 8 3.7156 -3.9551 -0.7983 8 6 2.5264 -3.3094 -2.6999 9 6 2.6814 -4.4280 -3.4716 10 6 1.9756 -4.1211 -4.6579 11 17 1.7886 -5.1432 -6.0486 12 7 1.4974 -2.9196 -4.5047 13 8 1.7892 -2.4506 -3.4294 14 6 3.2816 -1.5368 0.6472 15 6 2.0693 -0.7719 1.2263 16 1 1.3209 -1.4692 1.6031 17 6 2.5113 0.1968 2.3250 18 6 2.9216 -0.5949 3.5682 19 7 3.3443 0.3327 4.6204 20 6 3.7587 -0.1501 5.8329 21 1 3.7736 -1.2147 6.0138 22 6 4.1597 0.7289 6.8297 23 7 4.1410 2.0264 6.6095 24 14 4.7243 0.0703 8.4840 25 1 6.1899 -0.1668 8.4483 26 1 4.4089 1.0603 9.5449 27 1 4.0233 -1.2063 8.7740 28 1 -0.3633 -1.0276 0.0122 29 1 -0.3634 0.5244 0.8838 30 1 -0.3633 0.5032 -0.8961 31 1 2.7166 -0.1221 -1.8111 32 1 1.2334 -1.1173 -1.8349 33 1 3.2170 -5.3345 -3.2308 34 1 3.4981 -2.4222 1.2451 35 1 4.1541 -0.8856 0.5926 36 1 3.3590 0.7842 1.9721 37 1 1.6861 0.8637 2.5749 38 1 2.0739 -1.1822 3.9212 39 1 3.7468 -1.2618 3.3183 40 1 3.3312 1.2889 4.4579 41 1 4.4209 2.6406 7.3062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104935282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:54 Heat of formation + Delta-G solvation = 14.948455 kcal Electronic energy + Delta-G solvation = -24987.787581 eV Core-core repulsion = 21124.628220 eV Total energy + Delta-G solvation = -3863.159361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.42760 -41.33198 -39.33395 -38.29658 -36.88011 -35.07652 -34.68666 -33.56635 -33.20071 -31.75744 -28.83289 -27.51088 -26.30508 -24.91696 -24.84827 -23.76545 -22.15506 -21.54678 -21.05497 -19.27154 -19.24504 -19.05534 -17.66305 -17.37651 -16.82718 -16.65083 -16.29109 -15.76498 -15.45978 -15.26056 -15.08235 -15.00054 -14.56397 -14.32819 -14.11586 -13.92166 -13.66490 -13.54644 -13.20041 -13.06326 -12.87088 -12.65257 -12.43516 -12.27564 -12.25784 -12.11395 -11.89447 -11.64420 -11.57269 -11.45452 -11.30060 -11.25140 -11.09511 -10.90105 -9.91521 -8.97526 -7.94313 -5.22504 -0.55985 0.23016 0.54426 1.16340 1.48297 1.49735 1.58177 1.68950 1.84526 2.57069 2.87798 3.34868 3.39393 3.44518 3.51517 3.66636 3.71225 3.77227 4.11996 4.23652 4.32197 4.48196 4.50317 4.52437 4.60356 4.68161 4.69711 4.83028 4.87542 4.93074 4.97220 5.09903 5.19215 5.31827 5.40737 5.44807 5.51766 5.56221 6.15862 6.29071 6.47866 6.71498 7.35193 8.12540 8.35196 9.29073 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.002081 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.229742 B =13452.647779 C =14194.524986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.103 0.897 4 C 0.096 3.904 5 N -0.603 5.603 6 C 0.620 3.380 7 O -0.544 6.544 8 C -0.067 4.067 9 C -0.128 4.128 10 C 0.049 3.951 11 Cl 0.047 6.953 12 N -0.341 5.341 13 O 0.144 5.856 14 C 0.109 3.891 15 C -0.083 4.083 16 H 0.083 0.917 17 C -0.099 4.099 18 C 0.148 3.852 19 N -0.747 5.747 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.271 1.271 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.015 0.985 39 H 0.019 0.981 40 H 0.375 0.625 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -9.672 -27.194 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.121 0.879 4 C -0.026 4.026 5 N -0.334 5.334 6 C 0.406 3.594 7 O -0.422 6.422 8 C -0.133 4.133 9 C -0.151 4.151 10 C -0.133 4.133 11 Cl 0.075 6.925 12 N -0.041 5.041 13 O 0.066 5.934 14 C -0.013 4.013 15 C -0.103 4.103 16 H 0.101 0.899 17 C -0.137 4.137 18 C 0.021 3.979 19 N -0.390 5.390 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.196 1.196 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.207 0.793 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.920 -9.674 -27.769 30.454 hybrid contribution 0.831 -0.614 1.208 1.589 sum -7.089 -10.288 -26.561 29.353 Atomic orbital electron populations 1.21848 0.93066 1.02090 1.02945 1.22141 0.97251 1.00059 0.91811 0.87850 1.22676 0.96324 0.86375 0.97208 1.48726 1.52095 1.14428 1.18138 1.16083 0.80058 0.81500 0.81771 1.90903 1.41685 1.44007 1.65608 1.23902 1.01396 0.92137 0.95834 1.23005 1.00866 1.01141 0.90098 1.24196 1.02409 0.92480 0.94263 1.98442 1.96368 1.61860 1.35828 1.73840 1.18611 1.11169 1.00494 1.85132 1.51702 1.37680 1.18858 1.22677 0.97898 0.99784 0.80915 1.22161 0.96514 0.96931 0.94652 0.89873 1.21551 1.01500 0.97529 0.93109 1.20880 0.96030 0.92611 0.88350 1.42592 1.79107 1.05557 1.11755 1.19625 1.34621 0.92349 0.91193 0.90957 1.25558 1.03489 0.95683 1.02142 1.69804 1.55742 1.01740 1.34572 0.85160 0.77970 0.77225 0.79539 1.21405 1.22033 1.19603 0.92868 0.92248 0.90650 0.88779 0.88832 0.77167 0.90731 0.89379 0.91205 0.91105 0.96689 0.96331 0.79295 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.90 71.98 0.64 -1.26 16 2 C -0.09 -1.39 3.17 -9.91 -0.03 -1.42 16 3 H 0.10 1.38 7.85 -2.39 -0.02 1.36 16 4 C 0.10 1.34 6.00 86.53 0.52 1.86 16 5 N -0.60 -11.93 3.29 -813.88 -2.68 -14.61 16 6 C 0.62 13.88 7.89 86.69 0.68 14.57 16 7 O -0.54 -15.85 17.12 -3.95 -0.07 -15.92 16 8 C -0.07 -1.21 7.09 24.38 0.17 -1.04 16 9 C -0.13 -2.01 10.96 22.71 0.25 -1.76 16 10 C 0.05 0.80 7.97 85.71 0.68 1.48 16 11 Cl 0.05 0.62 29.33 -2.72 -0.08 0.54 16 12 N -0.34 -6.22 12.05 -51.03 -0.61 -6.83 16 13 O 0.14 2.42 8.67 65.78 0.57 2.99 16 14 C 0.11 2.41 5.92 86.62 0.51 2.93 16 15 C -0.08 -1.72 2.58 -9.70 -0.02 -1.74 16 16 H 0.08 1.82 7.86 -2.38 -0.02 1.80 16 17 C -0.10 -2.69 4.70 30.59 0.14 -2.55 16 18 C 0.15 5.62 6.15 86.38 0.53 6.15 16 19 N -0.75 -37.58 5.60 -343.46 -1.92 -39.50 16 20 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 23 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 24 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.15 5.81 -2.39 -0.01 1.14 16 33 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.07 1.94 7.83 -2.38 -0.02 1.92 16 35 H 0.09 1.90 7.93 -2.39 -0.02 1.88 16 36 H 0.07 1.89 7.99 -2.39 -0.02 1.87 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.02 0.72 7.67 -2.39 -0.02 0.70 16 40 H 0.38 19.79 7.67 -92.71 -0.71 19.08 16 41 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -68.17 360.46 3.25 -64.92 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.35 Total: 18.47 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.39 Total: 0.30 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -4.94 Total: -119.61 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.50 Total: -12.93 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.08 Total: 0.54 kcal Total: -68.17 3.25 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104935282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.869 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds