Wall clock time and date at job start Tue Mar 31 2020 15:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99885 * 2 1 4 4 O 1.20825 * 120.00389 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99968 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00237 * 264.35479 * 6 5 3 8 8 H 1.08007 * 119.99976 * 138.08754 * 7 6 5 9 9 C 1.38954 * 120.00006 * 318.07999 * 7 6 5 10 10 N 1.31412 * 119.99605 * 341.24848 * 9 7 6 11 11 Si 1.86791 * 120.00075 * 161.24288 * 9 7 6 12 12 H 1.48504 * 109.47134 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47105 * 119.99886 * 11 9 7 14 14 H 1.48500 * 109.47419 * 240.00270 * 11 9 7 15 15 C 1.34785 * 119.99575 * 84.35186 * 6 5 3 16 16 O 1.21287 * 120.00209 * 5.64119 * 15 6 5 17 17 C 1.50702 * 119.99744 * 185.64520 * 15 6 5 18 18 H 1.09001 * 109.47086 * 37.75969 * 17 15 6 19 19 C 1.53000 * 109.46817 * 277.75951 * 17 15 6 20 20 C 1.50698 * 109.47236 * 157.76068 * 17 15 6 21 21 C 1.38229 * 119.98720 * 59.99187 * 20 17 15 22 22 C 1.38191 * 120.05093 * 180.02562 * 21 20 17 23 23 C 1.38497 * 120.02167 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.00902 * 179.97438 * 23 22 21 25 25 C 1.38397 * 119.97727 * 0.02562 * 23 22 21 26 26 C 1.38441 * 119.94788 * 359.97438 * 25 23 22 27 27 F 1.35102 * 120.01126 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.46957 * 60.00169 * 1 2 3 29 29 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46809 * 300.00016 * 1 2 3 31 31 H 1.09002 * 109.46668 * 59.99864 * 5 3 2 32 32 H 1.08997 * 109.46834 * 300.00177 * 5 3 2 33 33 H 0.96999 * 119.99459 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47315 * 62.02164 * 19 17 15 35 35 H 1.09000 * 109.47095 * 182.02377 * 19 17 15 36 36 H 1.09003 * 109.47274 * 302.02112 * 19 17 15 37 37 H 1.08006 * 119.97470 * 0.28622 * 21 20 17 38 38 H 1.07992 * 119.98541 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.02412 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2877 3.3037 -1.1828 8 1 3.9501 4.3136 -1.3634 9 6 5.0322 2.6369 -2.1482 10 7 5.7482 1.5862 -1.8159 11 14 5.0151 3.2338 -3.9181 12 1 4.1374 4.4265 -4.0298 13 1 6.3947 3.5946 -4.3321 14 1 4.4998 2.1553 -4.7993 15 6 4.0631 3.3587 1.1604 16 8 3.8924 2.7817 2.2135 17 6 4.3660 4.8350 1.1505 18 1 3.8609 5.3038 0.3059 19 6 5.8761 5.0448 1.0222 20 6 3.8798 5.4562 2.4345 21 6 4.3818 5.0201 3.6463 22 6 3.9365 5.5885 4.8246 23 6 2.9862 6.5955 4.7924 24 9 2.5507 7.1506 5.9445 25 6 2.4822 7.0322 3.5797 26 6 2.9290 6.4620 2.4000 27 9 2.4375 6.8869 1.2155 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7805 0.8891 33 1 6.2676 1.1205 -2.4899 34 1 6.2220 4.6270 0.0766 35 1 6.0985 6.1115 1.0511 36 1 6.3838 4.5453 1.8474 37 1 5.1257 4.2375 3.6721 38 1 4.3297 5.2473 5.7708 39 1 1.7415 7.8176 3.5537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116135321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:26 Heat of formation + Delta-G solvation = -179.878516 kcal Electronic energy + Delta-G solvation = -28632.457752 eV Core-core repulsion = 24176.760628 eV Total energy + Delta-G solvation = -4455.697124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.87813 -48.73023 -39.96216 -39.29805 -37.99211 -35.82950 -34.83168 -33.46414 -31.73372 -30.58612 -29.17899 -28.31372 -26.47710 -25.04515 -23.93895 -22.84887 -21.78851 -20.38307 -19.21423 -18.03303 -17.34260 -17.13014 -16.97560 -16.22090 -15.80023 -15.75254 -15.53646 -15.45709 -15.14963 -15.08299 -14.58974 -14.31130 -14.16558 -13.84313 -13.61798 -13.10818 -12.89875 -12.78786 -12.46523 -12.25042 -11.83438 -11.79851 -11.60734 -11.48248 -11.37618 -11.35814 -11.00947 -10.93172 -10.76504 -10.50782 -10.32934 -10.28241 -9.78151 -9.32287 -8.83962 -8.69586 -8.30120 -7.72499 -6.56666 -4.29845 1.16570 1.26293 3.00200 3.03630 3.14152 3.17011 3.21471 3.59340 3.79111 4.05718 4.05808 4.51787 4.63420 4.78591 4.86314 4.97500 5.05033 5.40480 5.41486 5.48029 5.57288 5.75256 5.80308 5.86065 5.90555 5.98048 6.13095 6.16552 6.26790 6.28880 6.38384 6.43524 6.63093 6.72160 6.84553 6.96798 7.00158 7.32073 7.66815 8.15490 8.51176 8.89408 9.22755 9.67221 10.48097 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.004724 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.242996 B = 5926.276699 C = 7103.832877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.443 3.557 4 O -0.505 6.505 5 C 0.130 3.870 6 N -0.424 5.424 7 C -0.339 4.339 8 H 0.092 0.908 9 C 0.047 3.953 10 N -0.860 5.860 11 Si 0.913 3.087 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.503 3.497 16 O -0.592 6.592 17 C -0.056 4.056 18 H 0.103 0.897 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.021 4.021 22 C -0.169 4.169 23 C 0.116 3.884 24 F -0.139 7.139 25 C -0.200 4.200 26 C 0.132 3.868 27 F -0.129 7.129 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.273 0.727 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 3.624 5.348 6.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.285 3.715 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.142 5.142 7 C -0.467 4.467 8 H 0.110 0.890 9 C -0.159 4.159 10 N -0.496 5.496 11 Si 0.739 3.261 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.292 3.708 16 O -0.476 6.476 17 C -0.077 4.077 18 H 0.121 0.879 19 C -0.186 4.186 20 C -0.102 4.102 21 C -0.039 4.039 22 C -0.188 4.188 23 C 0.097 3.903 24 F -0.118 7.118 25 C -0.219 4.219 26 C 0.113 3.887 27 F -0.107 7.107 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.470 3.525 5.750 7.183 hybrid contribution -0.644 0.410 -1.084 1.326 sum -3.114 3.935 4.666 6.852 Atomic orbital electron populations 1.23096 0.78063 1.02645 1.01998 1.86548 1.22246 1.34829 1.84916 1.25395 0.93687 0.80884 0.71543 1.90587 1.67068 1.36399 1.45019 1.20891 0.83939 0.88001 1.06721 1.42874 1.57059 1.08454 1.05833 1.19436 1.33032 1.01163 0.93038 0.89030 1.25426 0.93491 0.96513 1.00520 1.69915 1.24825 1.20297 1.34553 0.86083 0.78376 0.79337 0.82318 1.18943 1.20400 1.20384 1.20109 0.78573 0.88555 0.83584 1.90531 1.55378 1.70370 1.31325 1.19929 0.99014 0.94332 0.94406 0.87858 1.21626 0.92017 1.00975 1.03984 1.19853 0.97190 0.96132 0.96997 1.20843 0.97626 0.95916 0.89544 1.21170 0.99491 0.97930 1.00237 1.17257 0.96794 0.95301 0.80960 1.91485 1.88567 1.84342 1.47393 1.20841 1.05451 1.05189 0.90461 1.17163 0.95198 0.95721 0.80667 1.91512 1.86223 1.88689 1.44318 0.92465 0.88873 0.92534 0.84567 0.88114 0.91692 0.89554 0.92799 0.92754 0.83497 0.84403 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.04 10.57 -39.24 -0.41 -7.46 16 3 C 0.44 9.91 7.99 36.01 0.29 10.20 16 4 O -0.50 -12.51 16.05 -18.75 -0.30 -12.81 16 5 C 0.13 2.98 5.51 -5.19 -0.03 2.95 16 6 N -0.42 -10.18 2.04 -116.09 -0.24 -10.42 16 7 C -0.34 -8.15 7.63 -14.93 -0.11 -8.26 16 8 H 0.09 2.19 6.64 -52.48 -0.35 1.84 16 9 C 0.05 1.11 4.92 -17.47 -0.09 1.02 16 10 N -0.86 -20.77 11.72 55.50 0.65 -20.12 16 11 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.50 11.66 6.55 -10.98 -0.07 11.59 16 16 O -0.59 -14.47 14.22 5.55 0.08 -14.39 16 17 C -0.06 -1.10 2.18 -92.92 -0.20 -1.30 16 18 H 0.10 2.11 5.70 -51.93 -0.30 1.82 16 19 C -0.13 -2.22 8.87 37.16 0.33 -1.89 16 20 C -0.10 -1.80 4.63 -104.55 -0.48 -2.29 16 21 C -0.02 -0.35 7.88 -39.60 -0.31 -0.66 16 22 C -0.17 -2.42 10.03 -39.50 -0.40 -2.81 16 23 C 0.12 1.69 7.30 -39.43 -0.29 1.40 16 24 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 25 C -0.20 -2.97 10.01 -39.45 -0.39 -3.36 16 26 C 0.13 2.25 7.24 -39.43 -0.29 1.97 16 27 F -0.13 -2.29 16.19 2.25 0.04 -2.25 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.14 3.17 5.85 -51.93 -0.30 2.87 16 32 H 0.10 2.26 7.52 -51.93 -0.39 1.87 16 33 H 0.27 6.21 8.31 -40.82 -0.34 5.88 16 34 H 0.09 1.63 7.25 -51.93 -0.38 1.26 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.89 7.45 -51.93 -0.39 0.51 16 37 H 0.15 2.40 6.98 -52.48 -0.37 2.03 16 38 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -28.45 344.62 -5.10 -33.56 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.14 Total: 6.91 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.98 Total: 10.17 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.41 Total: -30.54 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.64 Total: -34.66 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.45 -5.10 -33.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116135321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.323 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds