Wall clock time and date at job start Tue Mar 31 2020 15:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99885 * 2 1 4 4 O 1.20825 * 120.00389 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99968 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.37094 * 120.00237 * 264.35479 * 6 5 3 8 8 H 1.08007 * 119.99976 * 138.08754 * 7 6 5 9 9 C 1.38954 * 120.00006 * 318.07999 * 7 6 5 10 10 N 1.31412 * 119.99605 * 341.24848 * 9 7 6 11 11 Si 1.86791 * 120.00075 * 161.24288 * 9 7 6 12 12 H 1.48504 * 109.47134 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47105 * 119.99886 * 11 9 7 14 14 H 1.48500 * 109.47419 * 240.00270 * 11 9 7 15 15 C 1.34785 * 119.99575 * 84.35186 * 6 5 3 16 16 O 1.21287 * 120.00209 * 5.64119 * 15 6 5 17 17 C 1.50702 * 119.99744 * 185.64520 * 15 6 5 18 18 H 1.09001 * 109.47086 * 37.75969 * 17 15 6 19 19 C 1.53000 * 109.46817 * 277.75951 * 17 15 6 20 20 C 1.50698 * 109.47236 * 157.76068 * 17 15 6 21 21 C 1.38229 * 119.98720 * 59.99187 * 20 17 15 22 22 C 1.38191 * 120.05093 * 180.02562 * 21 20 17 23 23 C 1.38497 * 120.02167 * 0.02562 * 22 21 20 24 24 F 1.35098 * 120.00902 * 179.97438 * 23 22 21 25 25 C 1.38397 * 119.97727 * 0.02562 * 23 22 21 26 26 C 1.38441 * 119.94788 * 359.97438 * 25 23 22 27 27 F 1.35102 * 120.01126 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.46957 * 60.00169 * 1 2 3 29 29 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46809 * 300.00016 * 1 2 3 31 31 H 1.09002 * 109.46668 * 59.99864 * 5 3 2 32 32 H 1.08997 * 109.46834 * 300.00177 * 5 3 2 33 33 H 0.96999 * 119.99459 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.47315 * 62.02164 * 19 17 15 35 35 H 1.09000 * 109.47095 * 182.02377 * 19 17 15 36 36 H 1.09003 * 109.47274 * 302.02112 * 19 17 15 37 37 H 1.08006 * 119.97470 * 0.28622 * 21 20 17 38 38 H 1.07992 * 119.98541 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.02412 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2877 3.3037 -1.1828 8 1 3.9501 4.3136 -1.3634 9 6 5.0322 2.6369 -2.1482 10 7 5.7482 1.5862 -1.8159 11 14 5.0151 3.2338 -3.9181 12 1 4.1374 4.4265 -4.0298 13 1 6.3947 3.5946 -4.3321 14 1 4.4998 2.1553 -4.7993 15 6 4.0631 3.3587 1.1604 16 8 3.8924 2.7817 2.2135 17 6 4.3660 4.8350 1.1505 18 1 3.8609 5.3038 0.3059 19 6 5.8761 5.0448 1.0222 20 6 3.8798 5.4562 2.4345 21 6 4.3818 5.0201 3.6463 22 6 3.9365 5.5885 4.8246 23 6 2.9862 6.5955 4.7924 24 9 2.5507 7.1506 5.9445 25 6 2.4822 7.0322 3.5797 26 6 2.9290 6.4620 2.4000 27 9 2.4375 6.8869 1.2155 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7805 0.8891 33 1 6.2676 1.1205 -2.4899 34 1 6.2220 4.6270 0.0766 35 1 6.0985 6.1115 1.0511 36 1 6.3838 4.5453 1.8474 37 1 5.1257 4.2375 3.6721 38 1 4.3297 5.2473 5.7708 39 1 1.7415 7.8176 3.5537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116135321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:25 Heat of formation + Delta-G solvation = -193.653493 kcal Electronic energy + Delta-G solvation = -28633.055080 eV Core-core repulsion = 24176.760628 eV Total energy + Delta-G solvation = -4456.294452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.06450 -50.00880 -41.67054 -40.84016 -39.45944 -37.50989 -36.64432 -34.94033 -33.56778 -31.80485 -30.68811 -29.74173 -27.93845 -26.82313 -25.37003 -24.11193 -23.23476 -21.98979 -20.96999 -19.28830 -18.94357 -18.75487 -18.54929 -17.76252 -17.37710 -17.06784 -16.97270 -16.92925 -16.65701 -16.35266 -16.18183 -15.85578 -15.50692 -15.39115 -14.96919 -14.70227 -14.45278 -14.33160 -13.76607 -13.67726 -13.46580 -13.17905 -13.15470 -12.96306 -12.87038 -12.73680 -12.68800 -12.62789 -12.16936 -12.06220 -11.90212 -11.80676 -11.58338 -11.10734 -10.45322 -10.02771 -9.66088 -9.52063 -8.37486 -6.16393 -0.08454 0.04609 1.22609 1.40496 1.48839 1.54321 1.60397 2.07308 2.30177 2.39008 2.83090 2.89767 3.02616 3.39625 3.58661 3.62465 3.89838 4.02533 4.11847 4.21853 4.27748 4.29589 4.37916 4.39946 4.49514 4.62701 4.74156 4.78813 4.87151 4.93441 4.97280 5.00476 5.08492 5.31997 5.36548 5.41563 5.47695 5.76755 5.87423 6.31624 6.78946 7.06100 7.41564 7.85997 8.68244 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.004724 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.242996 B = 5926.276699 C = 7103.832877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.448 3.552 4 O -0.534 6.534 5 C 0.129 3.871 6 N -0.435 5.435 7 C -0.353 4.353 8 H 0.086 0.914 9 C 0.018 3.982 10 N -0.882 5.882 11 Si 0.971 3.029 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.277 1.277 15 C 0.491 3.509 16 O -0.611 6.611 17 C -0.050 4.050 18 H 0.089 0.911 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.029 4.029 22 C -0.157 4.157 23 C 0.121 3.879 24 F -0.132 7.132 25 C -0.191 4.191 26 C 0.114 3.886 27 F -0.139 7.139 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.277 0.723 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 4.059 5.899 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.291 3.709 4 O -0.423 6.423 5 C 0.003 3.997 6 N -0.154 5.154 7 C -0.480 4.480 8 H 0.104 0.896 9 C -0.187 4.187 10 N -0.518 5.518 11 Si 0.795 3.205 12 H -0.191 1.191 13 H -0.196 1.196 14 H -0.203 1.203 15 C 0.281 3.719 16 O -0.498 6.498 17 C -0.071 4.071 18 H 0.107 0.893 19 C -0.176 4.176 20 C -0.121 4.121 21 C -0.047 4.047 22 C -0.175 4.175 23 C 0.101 3.899 24 F -0.110 7.110 25 C -0.211 4.211 26 C 0.095 3.905 27 F -0.117 7.117 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.875 3.941 6.303 7.971 hybrid contribution -0.592 0.202 -1.168 1.325 sum -3.467 4.143 5.135 7.454 Atomic orbital electron populations 1.23520 0.75234 1.05706 1.02027 1.86512 1.24897 1.32793 1.84109 1.25160 0.93494 0.81329 0.70900 1.90565 1.67629 1.37530 1.46602 1.20826 0.84762 0.87862 1.06237 1.43076 1.57291 1.08797 1.06201 1.19517 1.33643 1.01313 0.93513 0.89609 1.26049 0.92815 0.96531 1.03293 1.69969 1.25151 1.21029 1.35672 0.85205 0.78467 0.78662 0.78155 1.19142 1.19628 1.20251 1.20766 0.77996 0.90030 0.83119 1.90489 1.56269 1.71208 1.31800 1.19841 1.00297 0.91835 0.95171 0.89317 1.21551 0.90444 1.02649 1.02963 1.19828 0.98463 0.97115 0.96696 1.20841 0.97939 0.96192 0.89752 1.21415 0.98539 0.96947 1.00642 1.17270 0.96496 0.95077 0.81029 1.91511 1.88428 1.84175 1.46906 1.21037 1.05230 1.05081 0.89702 1.17314 0.95710 0.96361 0.81114 1.91483 1.86398 1.88826 1.45005 0.92334 0.84297 0.92688 0.85180 0.88323 0.91264 0.91608 0.90103 0.92230 0.83902 0.81478 0.81652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -13.80 10.57 -51.37 -0.54 -14.35 16 3 C 0.45 20.31 7.99 71.24 0.57 20.87 16 4 O -0.53 -26.94 16.05 21.97 0.35 -26.59 16 5 C 0.13 6.05 5.51 85.64 0.47 6.52 16 6 N -0.44 -21.51 2.04 -639.59 -1.30 -22.81 16 7 C -0.35 -17.33 7.63 84.04 0.64 -16.69 16 8 H 0.09 4.24 6.64 -2.91 -0.02 4.22 16 9 C 0.02 0.84 4.92 84.93 0.42 1.26 16 10 N -0.88 -42.96 11.72 21.66 0.25 -42.70 16 11 Si 0.97 38.00 29.59 68.60 2.03 40.03 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 13 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 15 C 0.49 23.38 6.55 87.66 0.57 23.95 16 16 O -0.61 -30.59 14.22 -3.05 -0.04 -30.64 16 17 C -0.05 -2.03 2.18 -12.29 -0.03 -2.05 16 18 H 0.09 3.77 5.70 -2.39 -0.01 3.76 16 19 C -0.12 -4.12 8.87 71.98 0.64 -3.48 16 20 C -0.12 -4.29 4.63 -19.82 -0.09 -4.38 16 21 C -0.03 -0.93 7.88 22.26 0.18 -0.75 16 22 C -0.16 -4.12 10.03 22.32 0.22 -3.89 16 23 C 0.12 3.20 7.30 22.37 0.16 3.36 16 24 F -0.13 -3.27 17.27 44.97 0.78 -2.49 16 25 C -0.19 -5.32 10.01 22.36 0.22 -5.10 16 26 C 0.11 3.85 7.24 22.37 0.16 4.01 16 27 F -0.14 -4.95 16.19 44.97 0.73 -4.22 16 28 H 0.06 1.63 8.13 -2.39 -0.02 1.62 16 29 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.13 6.22 5.85 -2.39 -0.01 6.21 16 32 H 0.10 4.58 7.52 -2.39 -0.02 4.56 16 33 H 0.28 12.64 8.31 -92.71 -0.77 11.87 16 34 H 0.06 2.54 7.25 -2.39 -0.02 2.52 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 1.97 7.45 -2.39 -0.02 1.95 16 37 H 0.14 4.62 6.98 -2.91 -0.02 4.60 16 38 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -61.37 344.62 8.70 -52.67 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.11 Total: 25.46 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 5.34 Total: 25.63 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -1.05 Total: -65.51 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -0.23 Total: -71.57 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.50 Total: -6.71 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -61.37 8.70 -52.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116135321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.982 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds