Wall clock time and date at job start Tue Mar 31 2020 15:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 117.00307 * 2 1 4 4 O 1.20822 * 119.99545 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99994 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46822 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00244 * 264.22959 * 6 5 3 8 8 H 1.08001 * 120.00418 * 197.50305 * 7 6 5 9 9 C 1.38949 * 119.99815 * 17.50403 * 7 6 5 10 10 N 1.31412 * 120.00190 * 21.53501 * 9 7 6 11 11 Si 1.86798 * 119.99890 * 201.53660 * 9 7 6 12 12 H 1.48497 * 109.47455 * 60.00254 * 11 9 7 13 13 H 1.48503 * 109.47166 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47539 * 300.00026 * 11 9 7 15 15 C 1.34782 * 119.99720 * 84.23006 * 6 5 3 16 16 O 1.21290 * 119.99942 * 354.98740 * 15 6 5 17 17 C 1.50699 * 119.99631 * 175.26386 * 15 6 5 18 18 H 1.09001 * 109.47317 * 326.49562 * 17 15 6 19 19 C 1.52999 * 109.47222 * 86.50260 * 17 15 6 20 20 C 1.50707 * 109.46766 * 206.50275 * 17 15 6 21 21 C 1.38231 * 119.98162 * 299.71827 * 20 17 15 22 22 C 1.38189 * 120.04295 * 179.76969 * 21 20 17 23 23 C 1.38498 * 120.02730 * 0.51290 * 22 21 20 24 24 F 1.35103 * 120.01180 * 179.76717 * 23 22 21 25 25 C 1.38394 * 119.97529 * 359.74192 * 23 22 21 26 26 C 1.38444 * 119.98811 * 120.00321 * 20 17 15 27 27 F 1.35108 * 120.01395 * 359.94951 * 26 20 17 28 28 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46858 * 299.99798 * 1 2 3 30 30 H 1.09008 * 109.47469 * 59.99538 * 1 2 3 31 31 H 1.08995 * 109.47409 * 60.00482 * 5 3 2 32 32 H 1.08997 * 109.47055 * 300.00013 * 5 3 2 33 33 H 0.97003 * 120.00380 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.46870 * 182.03454 * 19 17 15 35 35 H 1.08998 * 109.46935 * 302.03095 * 19 17 15 36 36 H 1.08997 * 109.47112 * 62.03048 * 19 17 15 37 37 H 1.07995 * 119.97928 * 0.03022 * 21 20 17 38 38 H 1.08006 * 119.98782 * 180.25967 * 22 21 20 39 39 H 1.07993 * 120.02895 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2900 3.3040 -1.1808 8 1 4.8561 4.2238 -1.1737 9 6 3.8742 2.7535 -2.3869 10 7 2.8645 1.9128 -2.4120 11 14 4.7506 3.2082 -3.9726 12 1 6.1811 2.8216 -3.8761 13 1 4.1203 2.4909 -5.1099 14 1 4.6476 4.6732 -4.1926 15 6 4.0607 3.3584 1.1619 16 8 3.7015 2.8353 2.1956 17 6 4.5895 4.7695 1.1756 18 1 5.3583 4.8770 0.4104 19 6 3.4462 5.7455 0.8907 20 6 5.1818 5.0708 2.5283 21 6 4.3900 5.0048 3.6594 22 6 4.9329 5.2761 4.9008 23 6 6.2686 5.6250 5.0119 24 9 6.7979 5.8948 6.2253 25 6 7.0610 5.6965 3.8795 26 6 6.5173 5.4194 2.6369 27 9 7.2898 5.4884 1.5306 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7805 0.8891 33 1 2.5740 1.5287 -3.2541 34 1 3.8353 6.7633 0.8648 35 1 2.9943 5.5047 -0.0716 36 1 2.6945 5.6636 1.6757 37 1 3.3473 4.7368 3.5733 38 1 4.3144 5.2202 5.7845 39 1 8.1027 5.9680 3.9652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116135328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:28 Heat of formation + Delta-G solvation = -172.714095 kcal Electronic energy + Delta-G solvation = -28694.271125 eV Core-core repulsion = 24238.884673 eV Total energy + Delta-G solvation = -4455.386452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.90460 -48.78372 -39.76941 -39.05710 -37.94037 -35.49523 -34.64816 -33.47941 -31.65434 -30.61384 -29.12824 -28.22370 -26.31436 -25.02408 -23.93544 -22.87102 -21.72989 -20.15184 -19.17798 -18.06865 -17.34054 -17.11581 -16.59449 -16.17041 -15.80208 -15.60053 -15.47838 -15.26983 -15.15180 -15.07603 -14.44226 -14.32543 -14.06343 -13.77884 -13.68844 -13.06101 -12.63598 -12.56138 -12.45447 -12.25160 -11.81721 -11.75543 -11.51851 -11.37684 -11.32585 -11.28367 -10.86878 -10.83056 -10.80224 -10.53156 -10.28354 -9.83249 -9.60487 -9.05336 -8.86850 -8.70751 -8.29443 -8.02268 -6.56622 -4.05738 1.12794 1.22807 3.05499 3.16089 3.17639 3.42803 3.53784 3.66885 3.95453 4.01295 4.04144 4.49933 4.59610 4.78802 4.90787 4.93848 5.04188 5.37263 5.67537 5.70216 5.74796 5.76787 5.85901 5.92513 5.94715 6.07435 6.12474 6.19348 6.26408 6.31472 6.34818 6.41987 6.56270 6.67575 6.79021 6.96134 7.29900 7.42642 7.54002 8.15382 8.90941 9.08090 9.27706 9.67081 10.50633 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.004496 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.400548 B = 6226.740875 C = 7727.323413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.485 3.515 4 O -0.496 6.496 5 C 0.158 3.842 6 N -0.424 5.424 7 C -0.340 4.340 8 H 0.106 0.894 9 C 0.041 3.959 10 N -0.865 5.865 11 Si 0.923 3.077 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.479 3.521 16 O -0.595 6.595 17 C -0.058 4.058 18 H 0.103 0.897 19 C -0.129 4.129 20 C -0.100 4.100 21 C -0.021 4.021 22 C -0.169 4.169 23 C 0.117 3.883 24 F -0.139 7.139 25 C -0.200 4.200 26 C 0.130 3.870 27 F -0.129 7.129 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.273 0.727 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 3.048 6.299 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.326 3.674 4 O -0.381 6.381 5 C 0.032 3.968 6 N -0.141 5.141 7 C -0.467 4.467 8 H 0.123 0.877 9 C -0.165 4.165 10 N -0.503 5.503 11 Si 0.749 3.251 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.267 3.733 16 O -0.481 6.481 17 C -0.079 4.079 18 H 0.121 0.879 19 C -0.186 4.186 20 C -0.102 4.102 21 C -0.039 4.039 22 C -0.188 4.188 23 C 0.097 3.903 24 F -0.118 7.118 25 C -0.219 4.219 26 C 0.111 3.889 27 F -0.108 7.108 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.296 2.985 6.624 7.619 hybrid contribution 0.332 0.243 -1.087 1.163 sum 2.628 3.228 5.536 6.927 Atomic orbital electron populations 1.22923 0.78703 1.01776 1.01621 1.86455 1.21690 1.35572 1.85753 1.23881 0.92190 0.80585 0.70722 1.90505 1.66401 1.36313 1.44838 1.20469 0.87426 0.85457 1.03450 1.43338 1.56802 1.07955 1.06033 1.19592 1.34399 1.10525 0.82194 0.87659 1.25192 0.94665 0.96992 0.99609 1.69834 1.21440 1.30843 1.28173 0.86057 0.79650 0.78936 0.80484 1.19659 1.20901 1.19701 1.19799 0.82628 0.86927 0.83905 1.90531 1.54456 1.70022 1.33084 1.19986 0.99773 0.94954 0.93204 0.87866 1.21620 0.96645 0.96798 1.03568 1.19835 0.91744 1.01351 0.97233 1.20895 1.01161 0.92239 0.89623 1.21191 0.93596 1.04440 0.99539 1.17267 0.92014 1.01251 0.79748 1.91490 1.86840 1.91476 1.41958 1.20840 1.01615 1.08825 0.90634 1.17152 0.88441 1.01025 0.82291 1.91511 1.74517 1.93723 1.51029 0.89657 0.93167 0.92619 0.86108 0.90108 0.91592 0.92676 0.90164 0.92569 0.83391 0.84410 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.82 16 2 O -0.38 -7.99 10.57 -39.27 -0.41 -8.41 16 3 C 0.49 11.71 6.11 36.00 0.22 11.93 16 4 O -0.50 -13.33 15.71 -18.75 -0.29 -13.63 16 5 C 0.16 3.66 5.10 -5.19 -0.03 3.64 16 6 N -0.42 -10.15 2.17 -116.10 -0.25 -10.40 16 7 C -0.34 -8.11 8.64 -14.94 -0.13 -8.24 16 8 H 0.11 2.37 5.97 -52.49 -0.31 2.06 16 9 C 0.04 0.97 4.86 -17.47 -0.08 0.89 16 10 N -0.87 -21.64 9.25 55.50 0.51 -21.13 16 11 Si 0.92 18.64 29.60 -169.99 -5.03 13.61 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 C 0.48 10.96 6.50 -10.98 -0.07 10.89 16 16 O -0.60 -14.52 14.31 5.55 0.08 -14.44 16 17 C -0.06 -1.11 2.11 -92.92 -0.20 -1.31 16 18 H 0.10 1.98 5.36 -51.93 -0.28 1.70 16 19 C -0.13 -2.27 8.98 37.16 0.33 -1.93 16 20 C -0.10 -1.72 4.66 -104.54 -0.49 -2.21 16 21 C -0.02 -0.34 7.88 -39.60 -0.31 -0.65 16 22 C -0.17 -2.34 10.03 -39.50 -0.40 -2.74 16 23 C 0.12 1.62 7.30 -39.43 -0.29 1.33 16 24 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 25 C -0.20 -2.78 10.01 -39.45 -0.39 -3.17 16 26 C 0.13 2.08 7.24 -39.43 -0.29 1.79 16 27 F -0.13 -2.11 16.19 2.25 0.04 -2.07 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 31 H 0.12 2.79 6.45 -51.93 -0.34 2.45 16 32 H 0.08 1.76 7.68 -51.93 -0.40 1.36 16 33 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.58 7.68 -51.93 -0.40 1.18 16 36 H 0.06 0.97 7.30 -51.93 -0.38 0.59 16 37 H 0.15 2.48 6.83 -52.49 -0.36 2.12 16 38 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -29.06 340.59 -5.38 -34.44 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.13 Total: 6.69 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -1.05 Total: 12.03 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.26 Total: -31.53 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.63 Total: -36.48 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.90 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.06 -5.38 -34.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116135328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.277 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds