Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47376 * 2 1 4 4 C 1.50709 * 109.47127 * 119.99864 * 2 1 3 5 5 O 1.20825 * 119.99474 * 119.99685 * 4 2 1 6 6 O 1.34220 * 119.99698 * 300.00161 * 4 2 1 7 7 C 1.45202 * 116.99746 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47233 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99868 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99828 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47333 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99579 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00373 * 180.02562 * 14 12 11 17 17 H 1.48488 * 109.47236 * 89.99727 * 16 14 12 18 18 H 1.48500 * 109.47102 * 210.00406 * 16 14 12 19 19 H 1.48502 * 109.46554 * 330.00095 * 16 14 12 20 20 C 1.50699 * 109.47371 * 239.99820 * 2 1 3 21 21 C 1.38239 * 119.98900 * 300.00384 * 20 2 1 22 22 C 1.38185 * 120.04975 * 179.97438 * 21 20 2 23 23 C 1.38492 * 120.02814 * 359.97438 * 22 21 20 24 24 F 1.35094 * 120.01186 * 179.97438 * 23 22 21 25 25 C 1.38400 * 119.97170 * 359.97438 * 23 22 21 26 26 C 1.38437 * 119.95192 * 359.97438 * 25 23 22 27 27 F 1.35097 * 120.01171 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46638 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46975 * 299.99828 * 1 2 3 31 31 H 1.09002 * 109.46897 * 300.00060 * 7 6 4 32 32 H 1.08995 * 109.47307 * 59.99633 * 7 6 4 33 33 H 0.96998 * 120.00282 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47475 * 300.00247 * 11 10 8 35 35 H 1.09000 * 109.47001 * 60.00508 * 11 10 8 36 36 H 0.96998 * 119.99467 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.96696 * 0.26981 * 21 20 2 38 38 H 1.07998 * 119.98121 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.02143 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 1.7618 -0.3298 4.8640 9 8 1.0626 0.6600 4.8160 10 7 2.1231 -0.8426 6.0569 11 6 1.6716 -0.2040 7.2956 12 6 2.2098 -0.9664 8.4790 13 1 2.8269 -1.8391 8.3237 14 6 1.9145 -0.5499 9.7597 15 7 1.1626 0.5126 9.9487 16 14 2.5822 -1.4944 11.2264 17 1 3.9020 -0.9361 11.6156 18 1 1.6375 -1.3722 12.3656 19 1 2.7378 -2.9261 10.8639 20 6 2.0324 -0.7104 -1.2304 21 6 1.6983 -2.0339 -1.4490 22 6 2.1578 -2.6864 -2.5770 23 6 2.9534 -2.0149 -3.4904 24 9 3.4029 -2.6532 -4.5928 25 6 3.2876 -0.6895 -3.2731 26 6 2.8258 -0.0365 -2.1432 27 9 3.1518 1.2571 -1.9296 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8625 -2.0131 3.5565 32 1 3.3162 -0.9861 3.5569 33 1 2.6820 -1.6344 6.0952 34 1 2.0361 0.8227 7.3291 35 1 0.5820 -0.2039 7.3282 36 1 0.9552 0.8058 10.8497 37 1 1.0737 -2.5568 -0.7398 38 1 1.8958 -3.7203 -2.7469 39 1 3.9076 -0.1649 -3.9850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116172173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -193.225699 kcal Electronic energy + Delta-G solvation = -26402.175661 eV Core-core repulsion = 21945.899760 eV Total energy + Delta-G solvation = -4456.275901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.46033 -49.42210 -40.99904 -39.41500 -38.65431 -36.47856 -34.69173 -34.28614 -32.44122 -31.28659 -29.86617 -29.06403 -26.78928 -25.26930 -23.71759 -23.10644 -22.42209 -20.58313 -19.98356 -18.71097 -18.14621 -17.65577 -17.35235 -16.71360 -16.66593 -16.36744 -16.06458 -15.78505 -15.71101 -15.42974 -15.07393 -14.91725 -14.76725 -14.43650 -14.26928 -13.54121 -13.30323 -13.17250 -12.96445 -12.80904 -12.56680 -12.31154 -12.18687 -12.02451 -11.83379 -11.70014 -11.59297 -11.04177 -10.94785 -10.76854 -10.59990 -10.37038 -9.50904 -9.47018 -9.23702 -9.10598 -8.81089 -8.02744 -6.22176 -4.29743 0.42037 0.57091 1.97718 2.27107 2.94172 3.12868 3.21377 3.27692 3.29899 3.39436 3.82057 3.89346 3.98158 4.11227 4.30182 4.37386 4.56207 4.65962 4.68691 4.82639 5.05817 5.13757 5.17568 5.24513 5.29301 5.35081 5.37993 5.42246 5.45538 5.57998 5.75798 5.83025 6.20968 6.29588 7.18858 7.26346 7.42435 7.51607 7.59857 7.89080 8.45903 8.67698 8.92274 9.36739 10.87887 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.001964 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.879734 B =14252.102468 C =14655.287873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 H 0.125 0.875 4 C 0.466 3.534 5 O -0.503 6.503 6 O -0.323 6.323 7 C 0.048 3.952 8 C 0.499 3.501 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.906 3.094 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.120 4.120 21 C -0.028 4.028 22 C -0.162 4.162 23 C 0.133 3.867 24 F -0.131 7.131 25 C -0.194 4.194 26 C 0.143 3.857 27 F -0.126 7.126 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -4.983 -27.295 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.143 0.857 4 C 0.308 3.692 5 O -0.390 6.390 6 O -0.238 6.238 7 C -0.029 4.029 8 C 0.282 3.718 9 O -0.411 6.411 10 N -0.356 5.356 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.733 3.267 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.121 4.121 21 C -0.046 4.046 22 C -0.181 4.181 23 C 0.114 3.886 24 F -0.110 7.110 25 C -0.213 4.213 26 C 0.123 3.877 27 F -0.105 7.105 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.035 -4.404 -27.172 27.546 hybrid contribution 1.022 -0.847 0.766 1.533 sum 2.056 -5.251 -26.406 27.002 Atomic orbital electron populations 1.21844 0.90066 1.03586 1.04537 1.19813 0.99175 1.00710 0.86381 0.85745 1.23440 0.77715 0.82993 0.85022 1.90686 1.35321 1.25746 1.87290 1.86551 1.68792 1.54536 1.13898 1.22903 1.00444 0.96141 0.83443 1.19871 0.82069 0.85317 0.84521 1.90713 1.37639 1.25610 1.87138 1.46372 1.51857 1.31195 1.06218 1.19183 0.95883 0.93732 0.78103 1.21202 1.33395 1.13250 0.90547 0.91768 1.24958 0.94828 0.95113 0.99120 1.69976 1.36072 1.23672 1.22425 0.86383 0.78748 0.80013 0.81586 1.20419 1.20967 1.19722 1.19425 1.01091 0.95476 0.96134 1.20716 0.96315 0.92209 0.95335 1.21194 1.00368 1.01735 0.94815 1.17317 0.96539 0.90208 0.84565 1.91539 1.87281 1.81503 1.50631 1.20963 1.05993 0.94650 0.99712 1.17030 0.96781 0.79147 0.94701 1.91539 1.90738 1.33643 1.94543 0.90585 0.91608 0.89643 0.88437 0.88463 0.77418 0.95243 0.95220 0.92354 0.83917 0.83720 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.94 37.16 0.33 -0.76 16 2 C -0.04 -0.39 2.99 -92.92 -0.28 -0.67 16 3 H 0.12 1.11 7.12 -51.93 -0.37 0.74 16 4 C 0.47 5.81 7.13 36.01 0.26 6.07 16 5 O -0.50 -6.96 14.86 -18.75 -0.28 -7.24 16 6 O -0.32 -4.76 9.66 -45.88 -0.44 -5.20 16 7 C 0.05 0.70 5.94 36.01 0.21 0.91 16 8 C 0.50 9.69 7.91 -10.99 -0.09 9.60 16 9 O -0.53 -12.68 16.50 -14.10 -0.23 -12.91 16 10 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 11 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 12 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 13 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.57 13.29 55.43 0.74 -24.83 16 16 Si 0.91 20.48 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.12 -1.09 4.40 -104.54 -0.46 -1.55 16 21 C -0.03 -0.22 7.93 -39.60 -0.31 -0.54 16 22 C -0.16 -1.20 10.02 -39.51 -0.40 -1.59 16 23 C 0.13 1.08 7.30 -39.43 -0.29 0.79 16 24 F -0.13 -1.13 17.27 2.25 0.04 -1.09 16 25 C -0.19 -1.55 10.01 -39.45 -0.39 -1.95 16 26 C 0.14 1.29 7.24 -39.43 -0.29 1.01 16 27 F -0.13 -1.21 16.19 2.25 0.04 -1.18 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 30 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.14 1.01 7.51 -52.49 -0.39 0.62 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.86 355.31 -6.70 -39.56 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.40 Total: 2.02 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.15 Total: 4.65 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.40 Total: -39.42 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.95 Total: -25.36 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.86 -6.70 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116172173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.671 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds