Wall clock time and date at job start Tue Mar 31 2020 15:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47376 * 2 1 4 4 C 1.50709 * 109.47127 * 119.99864 * 2 1 3 5 5 O 1.20825 * 119.99474 * 119.99685 * 4 2 1 6 6 O 1.34220 * 119.99698 * 300.00161 * 4 2 1 7 7 C 1.45202 * 116.99746 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47233 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99868 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99828 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47333 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99579 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00306 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99911 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00373 * 180.02562 * 14 12 11 17 17 H 1.48488 * 109.47236 * 89.99727 * 16 14 12 18 18 H 1.48500 * 109.47102 * 210.00406 * 16 14 12 19 19 H 1.48502 * 109.46554 * 330.00095 * 16 14 12 20 20 C 1.50699 * 109.47371 * 239.99820 * 2 1 3 21 21 C 1.38239 * 119.98900 * 300.00384 * 20 2 1 22 22 C 1.38185 * 120.04975 * 179.97438 * 21 20 2 23 23 C 1.38492 * 120.02814 * 359.97438 * 22 21 20 24 24 F 1.35094 * 120.01186 * 179.97438 * 23 22 21 25 25 C 1.38400 * 119.97170 * 359.97438 * 23 22 21 26 26 C 1.38437 * 119.95192 * 359.97438 * 25 23 22 27 27 F 1.35097 * 120.01171 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46638 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46975 * 299.99828 * 1 2 3 31 31 H 1.09002 * 109.46897 * 300.00060 * 7 6 4 32 32 H 1.08995 * 109.47307 * 59.99633 * 7 6 4 33 33 H 0.96998 * 120.00282 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47475 * 300.00247 * 11 10 8 35 35 H 1.09000 * 109.47001 * 60.00508 * 11 10 8 36 36 H 0.96998 * 119.99467 * 180.02562 * 15 14 12 37 37 H 1.07998 * 119.96696 * 0.26981 * 21 20 2 38 38 H 1.07998 * 119.98121 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.02143 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 1.7618 -0.3298 4.8640 9 8 1.0626 0.6600 4.8160 10 7 2.1231 -0.8426 6.0569 11 6 1.6716 -0.2040 7.2956 12 6 2.2098 -0.9664 8.4790 13 1 2.8269 -1.8391 8.3237 14 6 1.9145 -0.5499 9.7597 15 7 1.1626 0.5126 9.9487 16 14 2.5822 -1.4944 11.2264 17 1 3.9020 -0.9361 11.6156 18 1 1.6375 -1.3722 12.3656 19 1 2.7378 -2.9261 10.8639 20 6 2.0324 -0.7104 -1.2304 21 6 1.6983 -2.0339 -1.4490 22 6 2.1578 -2.6864 -2.5770 23 6 2.9534 -2.0149 -3.4904 24 9 3.4029 -2.6532 -4.5928 25 6 3.2876 -0.6895 -3.2731 26 6 2.8258 -0.0365 -2.1432 27 9 3.1518 1.2571 -1.9296 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8625 -2.0131 3.5565 32 1 3.3162 -0.9861 3.5569 33 1 2.6820 -1.6344 6.0952 34 1 2.0361 0.8227 7.3291 35 1 0.5820 -0.2039 7.3282 36 1 0.9552 0.8058 10.8497 37 1 1.0737 -2.5568 -0.7398 38 1 1.8958 -3.7203 -2.7469 39 1 3.9076 -0.1649 -3.9850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116172173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:36 Heat of formation + Delta-G solvation = -212.781043 kcal Electronic energy + Delta-G solvation = -26403.023645 eV Core-core repulsion = 21945.899760 eV Total energy + Delta-G solvation = -4457.123885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.14978 -50.05612 -41.99838 -40.56778 -39.83170 -37.58537 -36.18094 -35.41710 -34.41355 -31.89153 -30.97588 -30.14534 -28.51455 -26.05859 -24.74327 -24.27515 -23.58393 -21.65443 -21.46179 -19.37538 -19.26879 -18.95025 -18.24070 -17.93782 -17.78367 -17.21354 -17.03655 -16.97389 -16.68324 -16.49278 -16.37464 -16.18399 -15.79532 -15.55530 -15.10716 -14.73585 -14.61505 -14.14770 -14.00052 -13.90930 -13.78951 -13.61362 -13.35248 -13.04109 -12.93845 -12.84099 -12.71991 -12.36153 -12.26822 -12.22984 -11.90725 -11.55402 -11.49371 -10.90998 -10.81723 -10.11877 -9.92916 -9.75751 -8.29588 -6.46076 -0.22685 -0.03578 1.00528 1.22127 1.44902 1.46310 1.55732 1.57741 2.24545 2.36347 2.58629 2.76936 3.05681 3.14231 3.34183 3.45514 3.62210 3.74009 3.85703 3.96960 4.00596 4.06344 4.06450 4.21225 4.62849 4.72788 4.78410 4.83434 4.85336 4.98408 5.06982 5.13749 5.19456 5.22158 5.25694 5.41986 5.62914 5.67478 5.82285 6.51319 6.63104 6.78379 7.20638 7.35943 8.82385 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.001964 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.879734 B =14252.102468 C =14655.287873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 H 0.127 0.873 4 C 0.469 3.531 5 O -0.515 6.515 6 O -0.342 6.342 7 C 0.060 3.940 8 C 0.499 3.501 9 O -0.583 6.583 10 N -0.699 5.699 11 C 0.266 3.734 12 C -0.556 4.556 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.985 3.015 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.255 1.255 20 C -0.127 4.127 21 C -0.032 4.032 22 C -0.155 4.155 23 C 0.125 3.875 24 F -0.134 7.134 25 C -0.193 4.193 26 C 0.130 3.870 27 F -0.133 7.133 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.412 0.588 34 H -0.008 1.008 35 H -0.007 1.007 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -7.213 -28.159 29.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 H 0.145 0.855 4 C 0.313 3.687 5 O -0.403 6.403 6 O -0.258 6.258 7 C -0.017 4.017 8 C 0.285 3.715 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.144 3.856 12 C -0.594 4.594 13 H 0.104 0.896 14 C -0.196 4.196 15 N -0.568 5.568 16 Si 0.808 3.192 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.179 1.179 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.174 4.174 23 C 0.106 3.894 24 F -0.113 7.113 25 C -0.212 4.212 26 C 0.110 3.890 27 F -0.112 7.112 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.249 0.751 34 H 0.010 0.990 35 H 0.011 0.989 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.034 -6.676 -28.077 28.931 hybrid contribution 0.708 -0.132 0.934 1.179 sum 2.742 -6.807 -27.143 28.118 Atomic orbital electron populations 1.21855 0.88696 1.04376 1.04768 1.19887 1.00254 1.00461 0.85133 0.85540 1.23959 0.77186 0.82859 0.84731 1.90674 1.35949 1.26431 1.87276 1.86555 1.69338 1.55195 1.14682 1.22758 1.01612 0.96389 0.80925 1.20700 0.80614 0.84445 0.85747 1.90690 1.39743 1.27922 1.87973 1.46046 1.52182 1.31692 1.05145 1.18625 0.93613 0.92510 0.80846 1.21610 1.33339 1.13738 0.90737 0.89599 1.26053 0.94902 0.95976 1.02673 1.70135 1.37692 1.25673 1.23290 0.85154 0.77864 0.79130 0.77058 1.19716 1.21051 1.17893 1.19466 1.01462 0.95991 0.95885 1.20878 0.96483 0.91876 0.95800 1.21432 0.99304 1.02637 0.94033 1.17441 0.96906 0.90332 0.84715 1.91534 1.87381 1.81536 1.50836 1.21113 1.05739 0.94778 0.99583 1.17146 0.97436 0.79058 0.95323 1.91519 1.90900 1.34129 1.94646 0.88772 0.90575 0.90961 0.85467 0.86041 0.75127 0.99034 0.98861 0.92222 0.82894 0.81599 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.94 71.98 0.64 -1.30 16 2 C -0.04 -0.68 2.99 -12.28 -0.04 -0.72 16 3 H 0.13 2.18 7.12 -2.39 -0.02 2.16 16 4 C 0.47 11.02 7.13 71.24 0.51 11.53 16 5 O -0.52 -13.20 14.86 21.97 0.33 -12.87 16 6 O -0.34 -9.74 9.66 -44.97 -0.43 -10.17 16 7 C 0.06 1.63 5.94 71.24 0.42 2.05 16 8 C 0.50 19.38 7.91 87.66 0.69 20.07 16 9 O -0.58 -28.60 16.50 15.76 0.26 -28.34 16 10 N -0.70 -28.16 5.55 -466.78 -2.59 -30.75 16 11 C 0.27 14.18 5.43 85.63 0.46 14.64 16 12 C -0.56 -29.39 9.28 25.60 0.24 -29.16 16 13 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 14 C 0.00 0.20 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 16 Si 0.98 41.47 29.54 68.60 2.03 43.49 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 C -0.13 -2.11 4.40 -19.81 -0.09 -2.19 16 21 C -0.03 -0.46 7.93 22.26 0.18 -0.28 16 22 C -0.16 -1.94 10.02 22.32 0.22 -1.72 16 23 C 0.13 1.82 7.30 22.37 0.16 1.98 16 24 F -0.13 -2.09 17.27 44.97 0.78 -1.31 16 25 C -0.19 -2.83 10.01 22.36 0.22 -2.60 16 26 C 0.13 2.20 7.24 22.37 0.16 2.36 16 27 F -0.13 -2.48 16.19 44.97 0.73 -1.75 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.89 7.38 -2.38 -0.02 0.87 16 30 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 31 H 0.13 2.75 8.13 -2.39 -0.02 2.73 16 32 H 0.12 2.77 8.13 -2.39 -0.02 2.75 16 33 H 0.41 13.27 8.32 -92.71 -0.77 12.50 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.15 1.80 7.51 -2.91 -0.02 1.77 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.76 355.31 5.97 -66.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.34 Total: 14.35 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 4.26 Total: 15.33 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.30 Total: -85.52 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: 0.15 Total: -51.38 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.50 Total: -3.06 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.76 5.97 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116172173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.994 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds