Wall clock time and date at job start Tue Mar 31 2020 15:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 5 5 O 1.20833 * 119.99747 * 240.00031 * 4 2 1 6 6 O 1.34230 * 120.00262 * 59.71653 * 4 2 1 7 7 C 1.45202 * 116.99836 * 180.27336 * 6 4 2 8 8 C 1.50701 * 109.46859 * 180.02562 * 7 6 4 9 9 O 1.21275 * 120.00011 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99566 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99590 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46913 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00086 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00244 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47407 * 89.99917 * 16 14 12 18 18 H 1.48493 * 109.47342 * 210.00108 * 16 14 12 19 19 H 1.48508 * 109.46837 * 329.99792 * 16 14 12 20 20 C 1.50693 * 109.47354 * 119.99897 * 2 1 3 21 21 C 1.38230 * 119.98642 * 59.72559 * 20 2 1 22 22 C 1.38191 * 120.05086 * 179.76914 * 21 20 2 23 23 C 1.38488 * 120.02504 * 0.50792 * 22 21 20 24 24 F 1.35099 * 120.01784 * 179.76925 * 23 22 21 25 25 C 1.38399 * 119.97382 * 359.74679 * 23 22 21 26 26 C 1.38437 * 119.95162 * 359.97438 * 25 23 22 27 27 F 1.35104 * 120.01578 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 29 29 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 30 30 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47630 * 300.00638 * 7 6 4 32 32 H 1.09004 * 109.46770 * 60.01042 * 7 6 4 33 33 H 0.97001 * 120.00823 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.47163 * 299.99808 * 11 10 8 35 35 H 1.09004 * 109.46912 * 60.00013 * 11 10 8 36 36 H 0.97002 * 119.99990 * 179.97438 * 15 14 12 37 37 H 1.07999 * 119.97688 * 0.02562 * 21 20 2 38 38 H 1.08006 * 119.98652 * 180.25790 * 22 21 20 39 39 H 1.07998 * 120.02740 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7271 -1.6927 -1.1197 6 8 1.7035 -0.2549 -2.4496 7 6 2.2180 -0.9925 -3.5897 8 6 1.7492 -0.3386 -4.8639 9 8 1.0508 0.6517 -4.8160 10 7 2.1062 -0.8544 -6.0568 11 6 1.6510 -0.2184 -7.2956 12 6 2.1849 -0.9839 -8.4788 13 1 2.8012 -1.8571 -8.3236 14 6 1.8856 -0.5702 -9.7596 15 7 1.1346 0.4927 -9.9486 16 14 2.5467 -1.5195 -11.2263 17 1 1.5779 -2.5781 -11.6083 18 1 2.7422 -0.5917 -12.3691 19 1 3.8457 -2.1433 -10.8673 20 6 2.0324 -0.7103 1.2304 21 6 1.6937 -2.0321 1.4518 22 6 2.1575 -2.6862 2.5772 23 6 2.9538 -2.0149 3.4900 24 9 3.4034 -2.6532 4.5926 25 6 3.2893 -0.6900 3.2721 26 6 2.8288 -0.0374 2.1414 27 9 3.1559 1.2558 1.9271 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.3076 -0.9921 -3.5610 32 1 1.8538 -2.0192 -3.5525 33 1 2.6652 -1.6463 -6.0952 34 1 0.5614 -0.2177 -7.3245 35 1 2.0162 0.8080 -7.3326 36 1 0.9243 0.7840 -10.8497 37 1 1.0694 -2.5552 0.7425 38 1 1.8956 -3.7202 2.7470 39 1 3.9106 -0.1658 3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116172174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:39 Heat of formation + Delta-G solvation = -193.235218 kcal Electronic energy + Delta-G solvation = -26402.453353 eV Core-core repulsion = 21946.177039 eV Total energy + Delta-G solvation = -4456.276314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.45866 -49.42079 -40.99771 -39.41540 -38.65490 -36.47700 -34.69243 -34.28629 -32.44230 -31.28643 -29.86615 -29.06317 -26.78906 -25.27101 -23.71620 -23.10658 -22.42171 -20.58288 -19.98317 -18.71081 -18.14440 -17.65551 -17.35398 -16.71275 -16.66531 -16.36784 -16.06529 -15.78460 -15.71070 -15.42962 -15.07412 -14.91697 -14.76649 -14.43751 -14.26904 -13.54025 -13.30178 -13.17237 -12.96398 -12.80856 -12.56643 -12.31202 -12.18836 -12.02481 -11.83336 -11.69982 -11.59267 -11.04187 -10.94763 -10.76850 -10.60017 -10.37018 -9.50976 -9.47040 -9.23684 -9.10615 -8.81133 -8.02753 -6.22189 -4.29722 0.42041 0.57007 1.97623 2.27194 2.94163 3.12929 3.21290 3.27696 3.29962 3.39387 3.82048 3.89384 3.98144 4.11145 4.30185 4.37343 4.56182 4.65961 4.68701 4.82616 5.05819 5.13763 5.17596 5.24520 5.29326 5.35039 5.37986 5.42231 5.45527 5.57985 5.75744 5.83085 6.20978 6.29573 7.18890 7.26350 7.42459 7.51597 7.59869 7.89062 8.45946 8.67713 8.92296 9.36717 10.87882 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.001964 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.431137 B =14251.951521 C =14655.815342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 H 0.125 0.875 4 C 0.466 3.534 5 O -0.503 6.503 6 O -0.323 6.323 7 C 0.048 3.952 8 C 0.499 3.501 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.906 3.094 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.120 4.120 21 C -0.028 4.028 22 C -0.162 4.162 23 C 0.133 3.867 24 F -0.131 7.131 25 C -0.193 4.193 26 C 0.143 3.857 27 F -0.126 7.126 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -4.933 27.296 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.143 0.857 4 C 0.308 3.692 5 O -0.390 6.390 6 O -0.238 6.238 7 C -0.029 4.029 8 C 0.282 3.718 9 O -0.411 6.411 10 N -0.356 5.356 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.733 3.267 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.121 4.121 21 C -0.046 4.046 22 C -0.181 4.181 23 C 0.114 3.886 24 F -0.110 7.110 25 C -0.213 4.213 26 C 0.123 3.877 27 F -0.105 7.105 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.106 -4.349 27.173 27.541 hybrid contribution 1.005 -0.860 -0.767 1.529 sum 2.111 -5.209 26.406 26.997 Atomic orbital electron populations 1.21845 0.90059 1.03589 1.04540 1.19810 0.99172 1.00716 0.86382 0.85748 1.23442 0.77713 0.82994 0.85022 1.90688 1.35350 1.25713 1.87296 1.86553 1.68772 1.54555 1.13899 1.22905 1.00490 0.96095 0.83445 1.19869 0.82073 0.85312 0.84521 1.90711 1.37676 1.25575 1.87134 1.46375 1.51875 1.31178 1.06220 1.19182 0.95835 0.93775 0.78102 1.21203 1.33492 1.13167 0.90547 0.91767 1.24957 0.94848 0.95088 0.99121 1.69969 1.36112 1.23621 1.22432 0.86384 0.79257 0.79508 0.81583 1.20419 1.20969 1.19720 1.19421 1.01004 0.95528 0.96146 1.20717 0.96329 0.92213 0.95355 1.21196 1.00308 1.01710 0.94876 1.17317 0.96554 0.90204 0.84565 1.91541 1.87291 1.81510 1.50615 1.20963 1.05994 0.94670 0.99679 1.17033 0.96775 0.79172 0.94687 1.91541 1.90725 1.33667 1.94531 0.90583 0.89638 0.91607 0.88469 0.88432 0.77417 0.95230 0.95238 0.92350 0.83914 0.83718 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.93 37.16 0.33 -0.76 16 2 C -0.04 -0.39 2.99 -92.93 -0.28 -0.67 16 3 H 0.12 1.11 7.13 -51.93 -0.37 0.74 16 4 C 0.47 5.81 7.13 36.00 0.26 6.07 16 5 O -0.50 -6.97 14.88 -18.76 -0.28 -7.25 16 6 O -0.32 -4.76 9.65 -45.90 -0.44 -5.20 16 7 C 0.05 0.70 5.94 36.01 0.21 0.91 16 8 C 0.50 9.69 7.91 -10.99 -0.09 9.60 16 9 O -0.53 -12.67 16.50 -14.10 -0.23 -12.91 16 10 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 11 C 0.25 6.46 5.43 -5.19 -0.03 6.44 16 12 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 13 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 16 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C -0.12 -1.08 4.40 -104.55 -0.46 -1.54 16 21 C -0.03 -0.23 7.94 -39.60 -0.31 -0.54 16 22 C -0.16 -1.19 10.02 -39.51 -0.40 -1.59 16 23 C 0.13 1.08 7.30 -39.43 -0.29 0.79 16 24 F -0.13 -1.13 17.27 2.25 0.04 -1.09 16 25 C -0.19 -1.55 10.01 -39.45 -0.39 -1.95 16 26 C 0.14 1.29 7.24 -39.43 -0.29 1.01 16 27 F -0.13 -1.21 16.19 2.25 0.04 -1.18 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.06 0.45 7.37 -51.93 -0.38 0.06 16 31 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.14 1.01 7.51 -52.49 -0.39 0.61 16 38 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -32.86 355.31 -6.70 -39.55 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.40 Total: 2.02 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.15 Total: 4.65 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.40 Total: -39.41 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.95 Total: -25.36 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.86 -6.70 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116172174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.681 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds