Wall clock time and date at job start Tue Mar 31 2020 15:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 5 5 O 1.20833 * 119.99747 * 240.00031 * 4 2 1 6 6 O 1.34230 * 120.00262 * 59.71653 * 4 2 1 7 7 C 1.45202 * 116.99836 * 180.27336 * 6 4 2 8 8 C 1.50701 * 109.46859 * 180.02562 * 7 6 4 9 9 O 1.21275 * 120.00011 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99566 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99590 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46913 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00086 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00244 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47407 * 89.99917 * 16 14 12 18 18 H 1.48493 * 109.47342 * 210.00108 * 16 14 12 19 19 H 1.48508 * 109.46837 * 329.99792 * 16 14 12 20 20 C 1.50693 * 109.47354 * 119.99897 * 2 1 3 21 21 C 1.38230 * 119.98642 * 59.72559 * 20 2 1 22 22 C 1.38191 * 120.05086 * 179.76914 * 21 20 2 23 23 C 1.38488 * 120.02504 * 0.50792 * 22 21 20 24 24 F 1.35099 * 120.01784 * 179.76925 * 23 22 21 25 25 C 1.38399 * 119.97382 * 359.74679 * 23 22 21 26 26 C 1.38437 * 119.95162 * 359.97438 * 25 23 22 27 27 F 1.35104 * 120.01578 * 180.02562 * 26 25 23 28 28 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 29 29 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 30 30 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47630 * 300.00638 * 7 6 4 32 32 H 1.09004 * 109.46770 * 60.01042 * 7 6 4 33 33 H 0.97001 * 120.00823 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.47163 * 299.99808 * 11 10 8 35 35 H 1.09004 * 109.46912 * 60.00013 * 11 10 8 36 36 H 0.97002 * 119.99990 * 179.97438 * 15 14 12 37 37 H 1.07999 * 119.97688 * 0.02562 * 21 20 2 38 38 H 1.08006 * 119.98652 * 180.25790 * 22 21 20 39 39 H 1.07998 * 120.02740 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7271 -1.6927 -1.1197 6 8 1.7035 -0.2549 -2.4496 7 6 2.2180 -0.9925 -3.5897 8 6 1.7492 -0.3386 -4.8639 9 8 1.0508 0.6517 -4.8160 10 7 2.1062 -0.8544 -6.0568 11 6 1.6510 -0.2184 -7.2956 12 6 2.1849 -0.9839 -8.4788 13 1 2.8012 -1.8571 -8.3236 14 6 1.8856 -0.5702 -9.7596 15 7 1.1346 0.4927 -9.9486 16 14 2.5467 -1.5195 -11.2263 17 1 1.5779 -2.5781 -11.6083 18 1 2.7422 -0.5917 -12.3691 19 1 3.8457 -2.1433 -10.8673 20 6 2.0324 -0.7103 1.2304 21 6 1.6937 -2.0321 1.4518 22 6 2.1575 -2.6862 2.5772 23 6 2.9538 -2.0149 3.4900 24 9 3.4034 -2.6532 4.5926 25 6 3.2893 -0.6900 3.2721 26 6 2.8288 -0.0374 2.1414 27 9 3.1559 1.2558 1.9271 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.3076 -0.9921 -3.5610 32 1 1.8538 -2.0192 -3.5525 33 1 2.6652 -1.6463 -6.0952 34 1 0.5614 -0.2177 -7.3245 35 1 2.0162 0.8080 -7.3326 36 1 0.9243 0.7840 -10.8497 37 1 1.0694 -2.5552 0.7425 38 1 1.8956 -3.7202 2.7470 39 1 3.9106 -0.1658 3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116172174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:39 Heat of formation + Delta-G solvation = -212.790601 kcal Electronic energy + Delta-G solvation = -26403.301338 eV Core-core repulsion = 21946.177039 eV Total energy + Delta-G solvation = -4457.124299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.14803 -50.05483 -41.99716 -40.56836 -39.83208 -37.58400 -36.18111 -35.41791 -34.41454 -31.89126 -30.97584 -30.14483 -28.51397 -26.06013 -24.74258 -24.27374 -23.58446 -21.65405 -21.46168 -19.37509 -19.26828 -18.94916 -18.24153 -17.93851 -17.78288 -17.21296 -17.03697 -16.97332 -16.68428 -16.49311 -16.37399 -16.18356 -15.79490 -15.55478 -15.10785 -14.73517 -14.61486 -14.14757 -14.00000 -13.90778 -13.78972 -13.61333 -13.35249 -13.04118 -12.93794 -12.84374 -12.71815 -12.36047 -12.26827 -12.23110 -11.90716 -11.55470 -11.49452 -10.90969 -10.81696 -10.11933 -9.92904 -9.75773 -8.29589 -6.46046 -0.22684 -0.03646 1.00428 1.22201 1.44889 1.46306 1.55794 1.57745 2.24528 2.36354 2.58675 2.76894 3.05688 3.14210 3.34155 3.45502 3.62189 3.74010 3.85662 3.96929 4.00619 4.06372 4.06433 4.21215 4.62835 4.72763 4.78384 4.83426 4.85312 4.98408 5.07004 5.13710 5.19433 5.22188 5.25742 5.41991 5.62940 5.67452 5.82284 6.51283 6.63111 6.78419 7.20635 7.35955 8.82390 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.001964 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.431137 B =14251.951521 C =14655.815342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 H 0.127 0.873 4 C 0.469 3.531 5 O -0.515 6.515 6 O -0.342 6.342 7 C 0.060 3.940 8 C 0.499 3.501 9 O -0.583 6.583 10 N -0.699 5.699 11 C 0.266 3.734 12 C -0.557 4.557 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.985 3.015 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.256 1.256 20 C -0.127 4.127 21 C -0.033 4.033 22 C -0.155 4.155 23 C 0.125 3.875 24 F -0.134 7.134 25 C -0.193 4.193 26 C 0.130 3.870 27 F -0.134 7.134 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.412 0.588 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -7.155 28.158 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 H 0.145 0.855 4 C 0.313 3.687 5 O -0.403 6.403 6 O -0.258 6.258 7 C -0.017 4.017 8 C 0.285 3.715 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.144 3.856 12 C -0.594 4.594 13 H 0.104 0.896 14 C -0.196 4.196 15 N -0.568 5.568 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.180 1.180 20 C -0.128 4.128 21 C -0.051 4.051 22 C -0.174 4.174 23 C 0.106 3.894 24 F -0.113 7.113 25 C -0.212 4.212 26 C 0.110 3.890 27 F -0.112 7.112 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.249 0.751 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.112 -6.613 28.077 28.922 hybrid contribution 0.688 -0.148 -0.934 1.169 sum 2.800 -6.760 27.142 28.111 Atomic orbital electron populations 1.21856 0.88691 1.04377 1.04770 1.19884 1.00248 1.00471 0.85132 0.85538 1.23962 0.77180 0.82862 0.84732 1.90676 1.35980 1.26402 1.87282 1.86556 1.69322 1.55209 1.14682 1.22760 1.01643 0.96355 0.80928 1.20697 0.80624 0.84435 0.85746 1.90688 1.39781 1.27885 1.87969 1.46049 1.52195 1.31679 1.05148 1.18625 0.93566 0.92553 0.80845 1.21610 1.33448 1.13645 0.90738 0.89601 1.26052 0.94911 0.95963 1.02671 1.70129 1.37714 1.25638 1.23298 0.85155 0.79160 0.77855 0.77040 1.19599 1.21099 1.17962 1.19462 1.01378 0.96045 0.95899 1.20878 0.96492 0.91876 0.95814 1.21435 0.99249 1.02615 0.94096 1.17440 0.96919 0.90328 0.84715 1.91535 1.87391 1.81543 1.50820 1.21113 1.05743 0.94797 0.99550 1.17150 0.97429 0.79084 0.95310 1.91522 1.90887 1.34152 1.94634 0.88767 0.90961 0.90576 0.86056 0.85456 0.75128 0.98876 0.99023 0.92217 0.82888 0.81596 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.93 71.98 0.64 -1.31 16 2 C -0.04 -0.68 2.99 -12.29 -0.04 -0.72 16 3 H 0.13 2.18 7.13 -2.38 -0.02 2.16 16 4 C 0.47 11.02 7.13 71.23 0.51 11.53 16 5 O -0.52 -13.21 14.88 21.94 0.33 -12.89 16 6 O -0.34 -9.74 9.65 -45.06 -0.43 -10.17 16 7 C 0.06 1.63 5.94 71.24 0.42 2.05 16 8 C 0.50 19.38 7.91 87.66 0.69 20.07 16 9 O -0.58 -28.59 16.50 15.79 0.26 -28.33 16 10 N -0.70 -28.16 5.55 -466.78 -2.59 -30.75 16 11 C 0.27 14.18 5.43 85.63 0.46 14.65 16 12 C -0.56 -29.41 9.28 25.60 0.24 -29.17 16 13 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 16 Si 0.98 41.47 29.54 68.60 2.03 43.49 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 18 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 C -0.13 -2.10 4.40 -19.82 -0.09 -2.19 16 21 C -0.03 -0.46 7.94 22.26 0.18 -0.28 16 22 C -0.16 -1.94 10.02 22.32 0.22 -1.72 16 23 C 0.13 1.82 7.30 22.37 0.16 1.98 16 24 F -0.13 -2.09 17.27 44.97 0.78 -1.31 16 25 C -0.19 -2.82 10.01 22.36 0.22 -2.60 16 26 C 0.13 2.20 7.24 22.37 0.16 2.36 16 27 F -0.13 -2.48 16.19 44.97 0.73 -1.75 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.08 0.89 7.37 -2.38 -0.02 0.88 16 31 H 0.12 2.77 8.13 -2.39 -0.02 2.75 16 32 H 0.13 2.75 8.13 -2.38 -0.02 2.73 16 33 H 0.41 13.28 8.32 -92.71 -0.77 12.51 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.15 1.79 7.51 -2.91 -0.02 1.77 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.76 355.31 5.97 -66.78 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.34 Total: 14.35 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 4.26 Total: 15.33 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.30 Total: -85.51 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: 0.15 Total: -51.39 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.50 Total: -3.06 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.76 5.97 -66.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116172174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.007 kcal (2) G-P(sol) polarization free energy of solvation -72.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds