Wall clock time and date at job start Tue Mar 31 2020 15:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35107 * 125.98896 * 2 1 4 4 C 1.35854 * 107.65932 * 179.97438 * 3 2 1 5 5 N 1.40558 * 126.11891 * 179.97438 * 4 3 2 6 6 C 1.34654 * 119.48069 * 179.97438 * 5 4 3 7 7 C 1.38147 * 120.43516 * 180.02562 * 6 5 4 8 8 C 1.47340 * 120.27716 * 179.97438 * 7 6 5 9 9 O 1.21643 * 120.00277 * 257.70198 * 8 7 6 10 10 N 1.34782 * 119.99834 * 77.69608 * 8 7 6 11 11 C 1.36940 * 119.99979 * 183.49544 * 10 8 7 12 12 H 1.08001 * 119.99956 * 17.10067 * 11 10 8 13 13 C 1.38985 * 119.99968 * 197.10278 * 11 10 8 14 14 N 1.31401 * 120.00451 * 14.60634 * 13 11 10 15 15 Si 1.86807 * 119.99952 * 194.60291 * 13 11 10 16 16 H 1.48494 * 109.47073 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46654 * 119.99874 * 15 13 11 18 18 H 1.48491 * 109.47184 * 240.00030 * 15 13 11 19 19 C 1.46495 * 120.00144 * 3.49762 * 10 8 7 20 20 C 1.47200 * 109.47183 * 83.55834 * 19 10 8 21 21 N 8.51839 * 147.40227 * 311.21381 * 2 1 3 22 22 C 1.41593 * 119.45357 * 359.97438 * 7 6 5 23 23 C 1.36016 * 119.01536 * 359.72333 * 22 7 6 24 24 C 1.34539 * 119.47926 * 359.97438 * 5 4 3 25 25 O 1.21982 * 119.73371 * 359.97438 * 24 5 4 26 26 C 1.40340 * 107.75779 * 0.22603 * 4 3 2 27 27 N 1.30801 * 108.18912 * 359.61402 * 26 4 3 28 28 H 1.09001 * 109.47081 * 89.99937 * 1 2 3 29 29 H 1.09002 * 109.47451 * 210.00797 * 1 2 3 30 30 H 1.09008 * 109.46983 * 330.00331 * 1 2 3 31 31 H 1.08007 * 126.16960 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.78567 * 0.04601 * 6 5 4 33 33 H 0.96994 * 120.00226 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47188 * 203.55604 * 19 10 8 35 35 H 1.09001 * 109.47214 * 323.55967 * 19 10 8 36 36 H 1.08003 * 120.49114 * 180.02562 * 22 7 6 37 37 H 1.07998 * 120.23736 * 180.28804 * 23 22 7 38 38 H 1.08006 * 125.90046 * 179.74227 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0932 0.0000 4 6 3.5485 0.6660 0.0006 5 7 4.6920 1.4832 0.0003 6 6 5.9127 0.9148 0.0015 7 6 7.0499 1.6992 0.0017 8 6 8.3839 1.0736 0.0036 9 8 9.0289 1.0195 1.0335 10 7 8.8895 0.5611 -1.1359 11 6 10.0974 -0.0837 -1.1198 12 1 10.5140 -0.4267 -0.1843 13 6 10.7873 -0.2967 -2.3074 14 7 10.4414 0.3556 -3.3944 15 14 12.2066 -1.5102 -2.3584 16 1 12.3939 -2.1096 -1.0128 17 1 11.9054 -2.5830 -3.3401 18 1 13.4481 -0.8032 -2.7630 19 6 8.1467 0.6939 -2.3916 20 6 8.4260 2.0094 -2.9901 21 7 8.6415 3.0237 -3.4522 22 6 6.9230 3.1094 0.0002 23 6 5.6792 3.6599 -0.0073 24 6 4.5497 2.8211 -0.0012 25 8 3.4325 3.3106 -0.0027 26 6 3.5345 -0.7374 -0.0043 27 7 2.2878 -1.1333 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5138 31 1 1.9279 2.1213 -0.0004 32 1 6.0035 -0.1614 0.0019 33 1 10.9226 0.2067 -4.2232 34 1 8.4554 -0.0918 -3.0811 35 1 7.0787 0.6044 -2.1932 36 1 7.8008 3.7387 -0.0001 37 1 5.5595 4.7332 -0.0133 38 1 4.4030 -1.3794 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116580848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:49 Heat of formation + Delta-G solvation = 109.057799 kcal Electronic energy + Delta-G solvation = -27201.432455 eV Core-core repulsion = 23241.246487 eV Total energy + Delta-G solvation = -3960.185968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20153 -40.64442 -38.92422 -36.77008 -35.85151 -34.75918 -34.36430 -33.04066 -31.95842 -30.12400 -29.61264 -27.55045 -27.03784 -25.37818 -24.30758 -23.49500 -21.62031 -20.94513 -19.81832 -18.30281 -17.98003 -17.28708 -16.65078 -16.60077 -16.26568 -16.01325 -15.73154 -15.30358 -14.98839 -14.60387 -14.30313 -14.04069 -13.54255 -13.36966 -13.30003 -13.13218 -13.06036 -12.90093 -12.52683 -12.14910 -12.06423 -11.84306 -11.63874 -11.34064 -11.26739 -11.10868 -10.68271 -10.62952 -10.43226 -10.39040 -9.84953 -9.72891 -9.40485 -8.90479 -8.67959 -8.19661 -7.60638 -6.60165 -4.14257 0.77657 1.63013 1.78447 2.04293 2.49194 2.70775 3.01338 3.16712 3.22279 3.39762 3.65313 3.83785 3.96032 4.03506 4.15271 4.46185 4.59256 4.74624 4.80713 4.84213 4.86372 5.04933 5.08889 5.12492 5.15527 5.20081 5.37127 5.50041 5.60873 5.88074 5.97434 6.11545 6.28759 6.40096 6.53771 6.55440 6.75729 7.04493 7.34779 7.35080 7.74537 8.02041 8.14647 8.69120 8.84830 9.04547 9.56846 10.43792 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016331 B = 0.003663 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.079589 B = 7643.173250 C = 8296.159645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.374 5.374 3 C 0.082 3.918 4 C -0.057 4.057 5 N -0.394 5.394 6 C 0.143 3.857 7 C -0.190 4.190 8 C 0.502 3.498 9 O -0.562 6.562 10 N -0.429 5.429 11 C -0.309 4.309 12 H 0.113 0.887 13 C 0.032 3.968 14 N -0.880 5.880 15 Si 0.933 3.067 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.282 1.282 19 C 0.219 3.781 20 C 0.248 3.752 21 N -0.472 5.472 22 C 0.018 3.982 23 C -0.243 4.243 24 C 0.513 3.487 25 O -0.560 6.560 26 C 0.056 3.944 27 N -0.282 5.282 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.209 0.791 32 H 0.170 0.830 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 -2.977 3.219 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.157 5.157 3 C -0.065 4.065 4 C -0.159 4.159 5 N -0.097 5.097 6 C 0.014 3.986 7 C -0.198 4.198 8 C 0.289 3.711 9 O -0.444 6.444 10 N -0.148 5.148 11 C -0.436 4.436 12 H 0.130 0.870 13 C -0.172 4.172 14 N -0.519 5.519 15 Si 0.760 3.240 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.208 1.208 19 C 0.091 3.909 20 C -0.070 4.070 21 N -0.152 5.152 22 C -0.005 4.005 23 C -0.264 4.264 24 C 0.318 3.682 25 O -0.444 6.444 26 C -0.132 4.132 27 N -0.103 5.103 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.226 0.774 32 H 0.187 0.813 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -17.157 -2.214 2.854 17.533 hybrid contribution 1.484 -0.143 -0.183 1.502 sum -15.673 -2.357 2.671 16.073 Atomic orbital electron populations 1.21909 0.73275 1.04759 1.03723 1.48424 1.06990 1.03598 1.56707 1.23266 0.89363 0.94514 0.99383 1.17954 0.86576 0.90377 1.20957 1.41973 1.04420 1.07230 1.56082 1.22130 0.82163 0.99689 0.94647 1.19848 0.93952 0.93965 1.12074 1.17436 0.85572 0.82831 0.85282 1.90693 1.61298 1.60193 1.32202 1.43639 1.18978 1.47890 1.04326 1.19866 0.96129 1.31713 0.95885 0.86972 1.25356 0.98935 0.97709 0.95166 1.69817 1.41798 1.38670 1.01652 0.85734 0.79971 0.79565 0.78766 1.18980 1.20361 1.20750 1.18879 0.94252 0.89743 0.87980 1.29215 0.91073 0.93995 0.92751 1.80875 1.10569 1.13900 1.09837 1.21475 0.98181 0.93406 0.87394 1.21849 0.90788 1.00881 1.12909 1.17131 0.91321 0.80040 0.79714 1.90690 1.26240 1.72777 1.54734 1.23840 0.96200 0.92233 1.00976 1.77345 1.00653 1.08564 1.23740 0.90401 0.89034 0.89111 0.77444 0.81277 0.91404 0.84235 0.90650 0.84395 0.82928 0.78886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.47 59.84 0.69 1.31 16 2 N -0.37 -4.02 4.01 -67.98 -0.27 -4.30 16 3 C 0.08 1.01 10.31 -16.96 -0.17 0.84 16 4 C -0.06 -0.75 6.56 -83.92 -0.55 -1.30 16 5 N -0.39 -5.63 2.81 -63.27 -0.18 -5.81 16 6 C 0.14 2.00 8.75 -16.35 -0.14 1.85 16 7 C -0.19 -3.21 4.21 -104.95 -0.44 -3.65 16 8 C 0.50 10.54 6.96 -12.56 -0.09 10.45 16 9 O -0.56 -13.90 16.77 5.24 0.09 -13.81 16 10 N -0.43 -9.24 2.60 -119.19 -0.31 -9.55 16 11 C -0.31 -7.36 9.36 -14.99 -0.14 -7.50 16 12 H 0.11 2.81 7.36 -52.49 -0.39 2.42 16 13 C 0.03 0.73 5.05 -17.46 -0.09 0.65 16 14 N -0.88 -20.77 9.11 55.50 0.51 -20.26 16 15 Si 0.93 18.53 29.58 -169.99 -5.03 13.50 16 16 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 C 0.22 4.13 4.92 -6.83 -0.03 4.10 16 20 C 0.25 5.30 13.68 -20.79 -0.28 5.02 16 21 N -0.47 -10.87 18.53 42.12 0.78 -10.09 16 22 C 0.02 0.29 9.86 -39.10 -0.39 -0.10 16 23 C -0.24 -3.65 9.96 -39.45 -0.39 -4.04 16 24 C 0.51 8.11 7.37 -15.44 -0.11 8.00 16 25 O -0.56 -9.47 14.10 4.93 0.07 -9.40 16 26 C 0.06 0.64 11.22 -17.20 -0.19 0.45 16 27 N -0.28 -3.45 12.56 30.72 0.39 -3.06 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.21 2.58 5.77 -52.48 -0.30 2.27 16 32 H 0.17 1.89 6.61 -52.48 -0.35 1.54 16 33 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.14 2.71 6.13 -51.93 -0.32 2.39 16 35 H 0.08 1.14 6.22 -51.93 -0.32 0.82 16 36 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.19 1.65 7.06 -52.48 -0.37 1.28 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -32.36 339.08 -4.49 -36.85 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.30 Total: 4.76 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: -2.34 Total: 16.07 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.91 Total: -53.07 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.36 -4.49 -36.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116580848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.905 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds