Wall clock time and date at job start Tue Mar 31 2020 15:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46029 * 2 1 4 4 C 1.53037 * 109.45064 * 119.96372 * 2 1 3 5 5 C 1.53623 * 109.24245 * 58.52761 * 4 2 1 6 6 N 1.46924 * 108.54339 * 54.85490 * 5 4 2 7 7 C 1.34777 * 120.62816 * 126.36856 * 6 5 4 8 8 O 1.21582 * 119.99687 * 186.71629 * 7 6 5 9 9 C 1.47520 * 120.00338 * 6.71948 * 7 6 5 10 10 C 1.36779 * 126.92853 * 187.19559 * 9 7 6 11 11 C 1.41410 * 103.83829 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 126.72822 * 179.97438 * 11 10 9 13 13 N 1.30225 * 106.55005 * 359.97438 * 11 10 9 14 14 O 1.20883 * 111.96108 * 0.02562 * 13 11 10 15 15 C 1.46923 * 118.73793 * 306.09599 * 6 5 4 16 16 C 1.53045 * 109.46295 * 240.02698 * 2 1 3 17 17 H 1.09003 * 109.49664 * 181.40437 * 16 2 1 18 18 C 1.52999 * 109.52313 * 61.32486 * 16 2 1 19 19 N 1.46499 * 109.47252 * 175.14707 * 18 16 2 20 20 C 1.36936 * 120.00172 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99966 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99846 * 179.97438 * 20 19 18 23 23 N 1.31613 * 119.99852 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99630 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47344 * 90.00124 * 24 22 20 26 26 H 1.48503 * 109.47177 * 210.00277 * 24 22 20 27 27 H 1.48499 * 109.47429 * 329.99926 * 24 22 20 28 28 H 1.09002 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47527 * 299.97221 * 1 2 3 30 30 H 1.08997 * 109.47572 * 59.97586 * 1 2 3 31 31 H 1.09001 * 109.50016 * 178.60454 * 4 2 1 32 32 H 1.08997 * 109.50099 * 298.69931 * 4 2 1 33 33 H 1.08997 * 109.73878 * 295.12010 * 5 4 2 34 34 H 1.08999 * 109.66574 * 174.54825 * 5 4 2 35 35 H 1.08004 * 128.08379 * 0.02562 * 10 9 7 36 36 H 1.09003 * 109.58711 * 173.64306 * 15 6 5 37 37 H 1.08995 * 109.59074 * 294.06922 * 15 6 5 38 38 H 1.09011 * 109.46909 * 295.14794 * 18 16 2 39 39 H 1.09000 * 109.47529 * 55.14227 * 18 16 2 40 40 H 0.96999 * 119.99856 * 359.97438 * 19 18 16 41 41 H 0.97007 * 119.99343 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 1.2502 5 6 1.4942 -2.1568 1.2644 6 7 1.8621 -2.8089 0.0002 7 6 2.5150 -3.9879 0.0004 8 8 2.9216 -4.4578 -1.0447 9 6 2.7363 -4.7084 1.2685 10 6 3.4914 -5.8338 1.4533 11 6 3.3665 -6.1016 2.8362 12 17 4.0957 -7.4126 3.7098 13 7 2.5974 -5.1719 3.3261 14 8 2.2364 -4.3902 2.4776 15 6 1.4994 -2.1542 -1.2641 16 6 2.0399 -0.7209 -1.2500 17 1 3.1297 -0.7431 -1.2381 18 6 1.5579 0.0190 -2.4994 19 7 2.1409 -0.6030 -3.6908 20 6 1.8499 -0.1077 -4.9338 21 1 1.1908 0.7418 -5.0359 22 6 2.4028 -0.6968 -6.0626 23 7 3.2064 -1.7316 -5.9381 24 14 2.0063 -0.0206 -7.7581 25 1 2.9998 1.0221 -8.1201 26 1 2.0581 -1.1207 -8.7543 27 1 0.6457 0.5742 -7.7481 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 3.1293 -0.7429 1.2386 32 1 1.6955 -0.1934 2.1399 33 1 0.4088 -2.1374 1.3631 34 1 1.9293 -2.7062 2.0991 35 1 4.0526 -6.3881 0.7156 36 1 1.9380 -2.7019 -2.0982 37 1 0.4145 -2.1346 -1.3674 38 1 0.4706 -0.0347 -2.5567 39 1 1.8677 1.0627 -2.4459 40 1 2.7332 -1.3657 -3.5991 41 1 3.5925 -2.1435 -6.7270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133253817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:41 Heat of formation + Delta-G solvation = 45.253232 kcal Electronic energy + Delta-G solvation = -26002.038412 eV Core-core repulsion = 22140.193165 eV Total energy + Delta-G solvation = -3861.845248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.57265 -40.45496 -38.28584 -37.53401 -35.14987 -34.18097 -33.64015 -32.45011 -31.82753 -29.85804 -27.80572 -26.16990 -25.10672 -24.03464 -23.44648 -23.17497 -21.28412 -20.96639 -18.89210 -18.37452 -17.72116 -17.10828 -16.86214 -16.25269 -15.48296 -15.21586 -15.01176 -14.99369 -14.29252 -14.17792 -13.87895 -13.59856 -13.45181 -13.16419 -13.03368 -12.82777 -12.71475 -12.48425 -11.91351 -11.70686 -11.50704 -11.28355 -11.12212 -10.93370 -10.81628 -10.71129 -10.46463 -10.43518 -10.28206 -10.20826 -10.15114 -9.91548 -9.61233 -8.85678 -8.66118 -6.89396 -5.72263 -3.02008 0.37933 1.01869 1.40935 2.15947 2.73777 2.91367 3.45795 3.50625 3.52738 3.77711 4.21729 4.32638 4.58456 4.60354 4.72202 4.80089 4.86568 5.09893 5.19908 5.29865 5.40061 5.47018 5.58401 5.63204 5.67789 5.75974 5.82285 5.89406 5.99682 6.06139 6.27837 6.30116 6.30562 6.43915 6.52886 6.73847 6.85706 7.12244 7.44005 7.72651 7.83432 8.45538 9.56698 10.14114 10.48121 11.49992 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.002911 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.530384 B = 9614.937448 C =11022.175255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.094 3.906 6 N -0.593 5.593 7 C 0.596 3.404 8 O -0.494 6.494 9 C -0.058 4.058 10 C -0.140 4.140 11 C 0.055 3.945 12 Cl 0.031 6.969 13 N -0.334 5.334 14 O 0.132 5.868 15 C 0.119 3.881 16 C -0.103 4.103 17 H 0.076 0.924 18 C 0.161 3.839 19 N -0.734 5.734 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.195 0.805 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 -5.170 22.223 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.325 5.325 7 C 0.379 3.621 8 O -0.368 6.368 9 C -0.124 4.124 10 C -0.163 4.163 11 C -0.128 4.128 12 Cl 0.059 6.941 13 N -0.038 5.038 14 O 0.059 5.941 15 C -0.001 4.001 16 C -0.122 4.122 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.212 0.788 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.582 -5.210 22.798 23.528 hybrid contribution 0.531 -0.386 -1.328 1.482 sum -2.051 -5.597 21.470 22.282 Atomic orbital electron populations 1.22000 0.95107 1.02022 1.01982 1.21097 0.96116 0.99554 0.93721 0.90556 1.22015 1.01242 0.94523 0.98764 1.22274 1.01196 0.94180 0.85184 1.48094 1.55571 1.19829 1.09052 1.16612 0.79514 0.81252 0.84692 1.90976 1.49320 1.66984 1.29497 1.24406 1.01106 0.98850 0.88002 1.22782 1.01763 0.97020 0.94723 1.24034 1.01406 0.95803 0.91577 1.98427 1.79434 1.40984 1.75274 1.73818 1.13081 1.02044 1.14840 1.85201 1.55131 1.40313 1.13469 1.21938 1.00436 0.93287 0.84468 1.21707 1.01090 0.94011 0.95407 0.90563 1.20682 0.96060 0.94784 0.85216 1.42423 1.57046 1.37560 1.00809 1.19188 1.23430 1.10953 0.83743 0.91235 1.24751 1.00024 0.98286 0.97815 1.69670 1.35481 1.24045 1.28553 0.86215 0.77754 0.77771 0.84574 1.21785 1.21792 1.20804 0.92441 0.92991 0.91668 0.91345 0.90442 0.90115 0.89073 0.78755 0.87461 0.90497 0.95819 0.96030 0.78114 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.11 37.16 0.30 -1.27 16 2 C -0.09 -0.96 2.71 -90.58 -0.25 -1.21 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.18 5.64 -26.39 -0.15 -1.33 16 5 C 0.09 0.91 5.71 -3.49 -0.02 0.89 16 6 N -0.59 -7.66 2.97 -173.75 -0.52 -8.18 16 7 C 0.60 8.49 7.68 -12.48 -0.10 8.39 16 8 O -0.49 -8.98 16.35 5.29 0.09 -8.89 16 9 C -0.06 -0.68 6.90 -36.33 -0.25 -0.93 16 10 C -0.14 -1.48 10.97 -38.90 -0.43 -1.91 16 11 C 0.06 0.58 7.97 -17.03 -0.14 0.44 16 12 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 13 N -0.33 -3.76 12.05 32.82 0.40 -3.36 16 14 O 0.13 1.41 7.93 15.53 0.12 1.53 16 15 C 0.12 1.82 5.06 -3.71 -0.02 1.80 16 16 C -0.10 -1.55 2.15 -90.50 -0.19 -1.74 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 19 N -0.73 -18.23 5.38 -59.91 -0.32 -18.56 16 20 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 28 H 0.06 0.58 4.96 -51.93 -0.26 0.32 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.68 6.68 -51.93 -0.35 0.33 16 34 H 0.09 0.81 4.25 -52.63 -0.22 0.59 16 35 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.11 2.06 6.20 -51.93 -0.32 1.74 16 37 H 0.08 1.11 6.69 -51.93 -0.35 0.76 16 38 H 0.02 0.45 6.73 -51.92 -0.35 0.10 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.38 10.23 6.89 -40.82 -0.28 9.95 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -31.72 343.54 -7.35 -39.08 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.98 Total: 5.84 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.50 Total: -1.16 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.21 Total: -7.35 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.72 -7.35 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.328 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds